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Search of human proteins with 149274624
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|149274624 limb bud and heart development homolog [Homo
sapiens]
(105 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|149274624 limb bud and heart development homolog [Homo sapiens] 223 2e-59
gi|46198301 hypothetical protein LOC79081 [Homo sapiens] 38 0.001
gi|55770852 glutamate receptor, ionotropic, delta 1 precursor [H... 29 0.69
gi|93141033 PAX interacting protein 1 [Homo sapiens] 28 1.5
gi|6978649 choline kinase beta [Homo sapiens] 28 2.0
gi|38016937 lemur tyrosine kinase 2 [Homo sapiens] 28 2.0
gi|47578117 DEP domain containing 2 isoform b [Homo sapiens] 28 2.0
gi|47578115 DEP domain containing 2 isoform a [Homo sapiens] 28 2.0
gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear... 27 2.6
gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear... 27 2.6
gi|122114654 methyltransferase 10 domain containing [Homo sapiens] 27 3.4
gi|22547191 sorting nexin 15 isoform A [Homo sapiens] 27 4.5
gi|13376339 plasticity-related protein 2 [Homo sapiens] 27 4.5
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 27 4.5
gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo... 26 5.9
gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo... 26 5.9
gi|18375650 protein tyrosine phosphatase, non-receptor type 13 i... 26 5.9
gi|18375648 protein tyrosine phosphatase, non-receptor type 13 i... 26 5.9
gi|18375646 protein tyrosine phosphatase, non-receptor type 13 i... 26 5.9
gi|5453992 protein tyrosine phosphatase, non-receptor type 13 is... 26 5.9
gi|186928821 hepatoma-derived growth factor isoform c [Homo sapi... 26 5.9
gi|186928819 hepatoma-derived growth factor isoform b [Homo sapi... 26 5.9
gi|4758516 hepatoma-derived growth factor isoform a [Homo sapiens] 26 5.9
gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens] 26 5.9
gi|50557648 zinc finger, FYVE domain containing 27 isoform c [Ho... 26 7.7
gi|239753245 PREDICTED: similar to UPF0634 protein C [Homo sapiens] 26 7.7
gi|239753231 PREDICTED: ankyrin repeat domain 36 [Homo sapiens] 26 7.7
gi|169210053 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|239741684 PREDICTED: ankyrin repeat domain 36 [Homo sapiens] 26 7.7
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 26 7.7
>gi|149274624 limb bud and heart development homolog [Homo sapiens]
Length = 105
Score = 223 bits (569), Expect = 2e-59
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MSIYFPIHCPDYLRSAKMTEVMMNTQPMEEIGLSPRKDGLSYQIFPDPSDFDRCCKLKDR 60
MSIYFPIHCPDYLRSAKMTEVMMNTQPMEEIGLSPRKDGLSYQIFPDPSDFDRCCKLKDR
Sbjct: 1 MSIYFPIHCPDYLRSAKMTEVMMNTQPMEEIGLSPRKDGLSYQIFPDPSDFDRCCKLKDR 60
Query: 61 LPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENKEQ 105
LPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENKEQ
Sbjct: 61 LPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENKEQ 105
>gi|46198301 hypothetical protein LOC79081 [Homo sapiens]
Length = 263
Score = 38.1 bits (87), Expect = 0.001
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 58 KDRLPSIVVEPTEGEVESGELRWPPEEFLVQED-EQDNCEETAKENKEQ 105
K LPSIVVE +E ESG+L P EE L+ D E+++ E ++ E+
Sbjct: 55 KSHLPSIVVESSEVNEESGDLHLPHEELLLLTDGEEEDAEAFFQDQSEE 103
>gi|55770852 glutamate receptor, ionotropic, delta 1 precursor [Homo
sapiens]
Length = 1009
Score = 29.3 bits (64), Expect = 0.69
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 43 QIFPDPSDFDRCCKLKDRLPSIVVEPTEGEVE 74
QIFP D +C + R+ S++ +P EG ++
Sbjct: 283 QIFPSAKDNQKCTRNNHRISSLLCDPQEGYLQ 314
>gi|93141033 PAX interacting protein 1 [Homo sapiens]
Length = 1069
Score = 28.1 bits (61), Expect = 1.5
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 41 SYQIFPDPSDFDRCCKLKDR-----LPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNC 95
++ I P+P C LK P V++ + + E + P + +E+E++
Sbjct: 137 THLIVPEPKGEKYECALKRASIKIVTPDWVLDCVSEKTKKDEAFYHPRLIIYEEEEEEEE 196
Query: 96 EETAKENKEQ 105
EE EN+EQ
Sbjct: 197 EEEEVENEEQ 206
>gi|6978649 choline kinase beta [Homo sapiens]
Length = 395
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 14/62 (22%)
Query: 9 CPDYLRSAKMTEVMMNTQPMEEIGLSPRKDGLSYQIFPDPSDFDRCCKLKDRLPSIVVEP 68
C +YL A QP EE+ + P GLS +F C L D LPS+ EP
Sbjct: 53 CREYLGGA-----WRRVQP-EELRVYPVSGGLSNLLFR--------CSLPDHLPSVGEEP 98
Query: 69 TE 70
E
Sbjct: 99 RE 100
>gi|38016937 lemur tyrosine kinase 2 [Homo sapiens]
Length = 1503
Score = 27.7 bits (60), Expect = 2.0
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 13/96 (13%)
Query: 13 LRSAKMTEVMMNTQPME----EIGLSPRKDGLSY-----QIFPDPSDF----DRCCKLKD 59
L++A TE M+ T E+ + K GLS D +D D
Sbjct: 749 LKNAGFTEAMLETSCRNSLDTELQFAENKPGLSLLQENVSTKGDDTDVMLTGDTLSTSLQ 808
Query: 60 RLPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNC 95
P + V PT E E R PP+ Q + Q C
Sbjct: 809 SSPEVQVPPTSFETEETPRRVPPDSLPTQGETQPTC 844
>gi|47578117 DEP domain containing 2 isoform b [Homo sapiens]
Length = 979
Score = 27.7 bits (60), Expect = 2.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 13 LRSAKMTEVMMNTQPMEEIGLSPRKDGLSYQI 44
L S K V+++T+P E + + DGL +QI
Sbjct: 660 LNSRKPLRVLVSTKPRETVKIPDSADGLGFQI 691
>gi|47578115 DEP domain containing 2 isoform a [Homo sapiens]
Length = 1606
Score = 27.7 bits (60), Expect = 2.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 13 LRSAKMTEVMMNTQPMEEIGLSPRKDGLSYQI 44
L S K V+++T+P E + + DGL +QI
Sbjct: 660 LNSRKPLRVLVSTKPRETVKIPDSADGLGFQI 691
>gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 67 EPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENKE 104
E EG+ + E+ EEF + +DE D E+ +E +E
Sbjct: 218 EDVEGDDDKDEVSEEEEEFGLDKDEDDEDEDEDEEEEE 255
>gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 67 EPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENKE 104
E EG+ + E+ EEF + +DE D E+ +E +E
Sbjct: 218 EDVEGDDDKDEVSEEEEEFGLDKDEDDEDEDEDEEEEE 255
>gi|122114654 methyltransferase 10 domain containing [Homo sapiens]
Length = 562
Score = 26.9 bits (58), Expect = 3.4
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 26 QPMEEIGLSPRKDGLSYQIFPDPSDFDRCCKLKDRLPSIVVEPTEGEVESGELRWPPEEF 85
Q +EE +P++ G S ++ P + C P++ EGE + E P +E
Sbjct: 404 QALEEKKPTPKESGNSQELARGPQERTPCG------PAL----REGEAAAVEGPCPSQES 453
Query: 86 LVQEDEQDNCEETAKENK 103
L QE+ + E+ E K
Sbjct: 454 LSQEENPEPTEDERSEEK 471
>gi|22547191 sorting nexin 15 isoform A [Homo sapiens]
Length = 342
Score = 26.6 bits (57), Expect = 4.5
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 6 PIHCPDYLRSAKMTEVMMNTQPMEEIGLSPRKDGLSYQIFPDPSDFDRCCKLKDRLPSI- 64
P+ P + + +++ N + EE SP + L+ + + FD K + PS
Sbjct: 173 PVDPPPSSPAQEALDLLFNCESTEEASGSPARGPLTEA---ELALFDPFSKEEGAAPSPT 229
Query: 65 -VVEPTEGEVESGELRWPPEEFLVQEDEQD 93
V E EVES L P E QE+E+D
Sbjct: 230 HVAELATMEVESARLDQEPWEPGGQEEEED 259
>gi|13376339 plasticity-related protein 2 [Homo sapiens]
Length = 746
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 72 EVESGELRWPPEEFLVQEDEQDNCEETAKENKEQ 105
+ G LR P E +E+E+++ EE +E +E+
Sbjct: 454 DASPGHLRAPAEPMAEEEEEEEDEEEEEEEEEEE 487
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 67 EPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENKEQ 105
E EG E++ PEE +E+E++ EE+ +E +E+
Sbjct: 516 EKVEGNKVHIEVKENPEEEEEEEEEEEEDEESEEEEEEE 554
>gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo
sapiens]
Length = 1236
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 67 EPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENKEQ 105
EP +G+ +S E E EDE+DN EE KEQ
Sbjct: 1003 EPAQGKGDSIE-----EILADSEDEEDNEEEERSRGKEQ 1036
>gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo
sapiens]
Length = 1297
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 67 EPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENKEQ 105
EP +G+ +S E E EDE+DN EE KEQ
Sbjct: 1064 EPAQGKGDSIE-----EILADSEDEEDNEEEERSRGKEQ 1097
>gi|18375650 protein tyrosine phosphatase, non-receptor type 13
isoform 4 [Homo sapiens]
Length = 2490
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 43 QIFPDPSDFDRC---CKLKDRLPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNCEETA 99
+ F + + + C C+ K + S++ +P E + + E+ W +E + E+ N E++
Sbjct: 2116 EYFTEATKMNGCEEYCEEKVKSESLIQKPQEKKTDDDEITWGNDELPI---ERTNHEDSD 2172
Query: 100 KEN 102
K++
Sbjct: 2173 KDH 2175
>gi|18375648 protein tyrosine phosphatase, non-receptor type 13
isoform 3 [Homo sapiens]
Length = 2294
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 43 QIFPDPSDFDRC---CKLKDRLPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNCEETA 99
+ F + + + C C+ K + S++ +P E + + E+ W +E + E+ N E++
Sbjct: 1920 EYFTEATKMNGCEEYCEEKVKSESLIQKPQEKKTDDDEITWGNDELPI---ERTNHEDSD 1976
Query: 100 KEN 102
K++
Sbjct: 1977 KDH 1979
>gi|18375646 protein tyrosine phosphatase, non-receptor type 13
isoform 1 [Homo sapiens]
Length = 2485
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 43 QIFPDPSDFDRC---CKLKDRLPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNCEETA 99
+ F + + + C C+ K + S++ +P E + + E+ W +E + E+ N E++
Sbjct: 2111 EYFTEATKMNGCEEYCEEKVKSESLIQKPQEKKTDDDEITWGNDELPI---ERTNHEDSD 2167
Query: 100 KEN 102
K++
Sbjct: 2168 KDH 2170
>gi|5453992 protein tyrosine phosphatase, non-receptor type 13 isoform
2 [Homo sapiens]
Length = 2466
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 43 QIFPDPSDFDRC---CKLKDRLPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNCEETA 99
+ F + + + C C+ K + S++ +P E + + E+ W +E + E+ N E++
Sbjct: 2092 EYFTEATKMNGCEEYCEEKVKSESLIQKPQEKKTDDDEITWGNDELPI---ERTNHEDSD 2148
Query: 100 KEN 102
K++
Sbjct: 2149 KDH 2151
>gi|186928821 hepatoma-derived growth factor isoform c [Homo
sapiens]
Length = 233
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 66 VEPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENKE 104
VE E G R PP+E +EDE+ EE KE+ E
Sbjct: 188 VEKNSTPSEPGSGRGPPQEEEEEEDEE---EEATKEDAE 223
>gi|186928819 hepatoma-derived growth factor isoform b [Homo
sapiens]
Length = 256
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 66 VEPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENKE 104
VE E G R PP+E +EDE+ EE KE+ E
Sbjct: 211 VEKNSTPSEPGSGRGPPQEEEEEEDEE---EEATKEDAE 246
>gi|4758516 hepatoma-derived growth factor isoform a [Homo sapiens]
Length = 240
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 66 VEPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENKE 104
VE E G R PP+E +EDE+ EE KE+ E
Sbjct: 195 VEKNSTPSEPGSGRGPPQEEEEEEDEE---EEATKEDAE 230
>gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens]
Length = 224
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/62 (19%), Positives = 30/62 (48%)
Query: 44 IFPDPSDFDRCCKLKDRLPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENK 103
+ P+ ++FD +L++ + S + P ++ +E+E++ EE +E +
Sbjct: 4 LLPNMAEFDTISELEEEEEEEAATSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEEEEEEE 63
Query: 104 EQ 105
E+
Sbjct: 64 EE 65
>gi|50557648 zinc finger, FYVE domain containing 27 isoform c [Homo
sapiens]
Length = 404
Score = 25.8 bits (55), Expect = 7.7
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 33 LSPRKDGLSYQIFPDPSDFDRCCKLKDRLPSIVVEPTE----GEVESGELRWPPEEF--L 86
++P+++ +++ P P D L D P++ PTE G VE E P EEF
Sbjct: 234 MNPKQEEHAFES-PPPPDVGGKDGLMDSTPALT--PTEDLTPGSVEEAEEAEPDEEFKDA 290
Query: 87 VQEDEQ 92
++ED++
Sbjct: 291 IEEDDE 296
>gi|239753245 PREDICTED: similar to UPF0634 protein C [Homo sapiens]
Length = 710
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 58 KDRLPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENKE 104
KD +I E +GE+ P DE+D+ A+ENK+
Sbjct: 447 KDSFSNITREKKDGEISRKVSSQKPPALKGTSDEEDSVLGIARENKD 493
>gi|239753231 PREDICTED: ankyrin repeat domain 36 [Homo sapiens]
Length = 948
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 58 KDRLPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENKE 104
KD +I E +GE+ P DE+D+ A+ENK+
Sbjct: 619 KDSFSNITREKKDGEISRKVSSQKPPALKGTSDEEDSVLGIARENKD 665
>gi|169210053 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 55 CKLKDRLPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENKEQ 105
C + LP VE E E E E+ EE +E E+D EE +E KE+
Sbjct: 110 CSAQQGLP---VEEEEVEEEEEEVE---EEEKEEEKEEDEEEEEKEEEKEE 154
>gi|239741684 PREDICTED: ankyrin repeat domain 36 [Homo sapiens]
Length = 1524
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 58 KDRLPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENKE 104
KD +I E +GE+ P DE+D+ A+ENK+
Sbjct: 619 KDSFSNITREKKDGEISRKVSSQKPPALKGTSDEEDSVLGIARENKD 665
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 70 EGEVESGELRWPPEEFLVQEDEQDNCEETAKENKEQ 105
EGE E G EE +ED+ D EE +E +E+
Sbjct: 211 EGEEEVGLSYLMKEEIQDEEDDDDYVEEGEEEEEEE 246
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,783,814
Number of Sequences: 37866
Number of extensions: 220750
Number of successful extensions: 522
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 48
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.