Guide to the Human Genome
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Name: C11orf48 Sequence: fasta or formatted (263aa) NCBI GI: 46198301
Description:

hypothetical protein LOC79081

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         22           2
 C cysteine            3.0          8           1
 D aspartate           6.8         18           1
 E glutamate          11.8         31           3
 F phenylalanine       3.0          8           2
 G glycine             8.4         22           2
 H histidine           4.2         11           1
 I isoleucine          1.5          4           1
 K lysine              2.3          6           1
 L leucine             6.5         17           4
 M methionine          0.4          1           1
 N asparagine          2.3          6           1
 P proline             9.5         25           2
 Q glutamine           5.7         15           1
 R arginine            4.9         13           1
 S serine              9.9         26           2
 T threonine           3.8         10           1
 V valine              4.2         11           2
 W tryptophan          2.7          7           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC79081 
LBH                   0.024   limb bud and heart development homolog 
BASP1                 0.022   brain abundant, membrane attached signal protein 1 [...
HJURP                 0.015   Holliday junction recognition protein 
KCP                   0.013   cysteine rich BMP regulator 2 isoform 2 
GNAS                  0.013   GNAS complex locus XLas 
KCP                   0.013   cysteine rich BMP regulator 2 isoform 1 
SP6                   0.013   Sp6 transcription factor 
SSH2                  0.011   slingshot 2 
MLL                   0.011   myeloid/lymphoid or mixed-lineage leukemia protein [...
USP40                 0.011   ubiquitin thioesterase 40 
MARCKS                0.011   myristoylated alanine-rich protein kinase C substra...
THAP10                0.011   THAP domain containing 10 
STARD8                0.011   StAR-related lipid transfer (START) domain containi...
STARD8                0.011   StAR-related lipid transfer (START) domain containi...
STARD8                0.011   StAR-related lipid transfer (START) domain containin...
NACA                  0.011   nascent polypeptide-associated complex alpha subuni...
TNFRSF1B              0.009   tumor necrosis factor receptor 2 precursor 
PTPRK                 0.009   protein tyrosine phosphatase, receptor type, K isof...
PTPRK                 0.009   protein tyrosine phosphatase, receptor type, K isofo...
SPNS2                 0.009   spinster homolog 2 
MEFV                  0.009   Mediterranean fever protein 
KIAA1217              0.009   sickle tail isoform 1 
HDGF2                 0.009   hepatoma-derived growth factor-related protein 2 iso...
LOC100130884          0.009   PREDICTED: hypothetical protein 
LOC100130884          0.009   PREDICTED: hypothetical protein 
LOC100130884          0.009   PREDICTED: hypothetical protein 
ITPKA                 0.009   1D-myo-inositol-trisphosphate 3-kinase A 
FOXJ2                 0.009   forkhead box J2 
SHROOM2               0.009   apical protein of Xenopus-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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