Guide to the Human Genome
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Name: SNX15 Sequence: fasta or formatted (342aa) NCBI GI: 22547191
Description:

sorting nexin 15 isoform A

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [256aa] sorting nexin 15 isoform B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         32           3
 C cysteine            0.3          1           1
 D aspartate           5.6         19           2
 E glutamate          11.7         40           4
 F phenylalanine       4.1         14           2
 G glycine             5.8         20           2
 H histidine           2.6          9           1
 I isoleucine          2.0          7           1
 K lysine              4.7         16           3
 L leucine            11.1         38           2
 M methionine          0.6          2           1
 N asparagine          1.2          4           2
 P proline            10.5         36           3
 Q glutamine           4.1         14           1
 R arginine            7.6         26           2
 S serine              5.6         19           2
 T threonine           4.4         15           1
 V valine              5.6         19           3
 W tryptophan          0.6          2           1
 Y tyrosine            2.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sorting nexin 15 isoform A 
SNX15                 0.642   sorting nexin 15 isoform B 
RPS6KC1               0.264   ribosomal protein S6 kinase, 52kDa, polypeptide 1 is...
RPS6KC1               0.228   ribosomal protein S6 kinase, 52kDa, polypeptide 1 i...
RPS6KL1               0.051   ribosomal protein S6 kinase-like 1 
SNX21                 0.036   sorting nexin 21 isoform a 
SNX20                 0.033   sorting nexin 20 isoform 1 
ULK3                  0.027   unc-51-like kinase 3 
SNX2                  0.025   sorting nexin 2 
SGK3                  0.025   serum/glucocorticoid regulated kinase 3 isoform 2 [H...
SGK3                  0.025   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
SGK3                  0.025   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
NCOR2                 0.024   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.024   nuclear receptor co-repressor 2 isoform 1 
SNX29                 0.024   sorting nexin 29 
VPS4B                 0.022   vacuolar protein sorting factor 4B 
VPS4A                 0.022   vacuolar protein sorting factor 4A 
FGD1                  0.021   faciogenital dysplasia protein 
LRRC47                0.021   leucine rich repeat containing 47 
SNX19                 0.019   sorting nexin 19 
HS1BP3                0.019   HCLS1 binding protein 3 
LIN37                 0.019   lin-37 homolog 
SNX18                 0.018   sorting nexin 18 isoform c 
RECQL4                0.018   RecQ protein-like 4 
EIF4G1                0.018   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.018   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.018   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.018   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.018   eukaryotic translation initiation factor 4 gamma, 1 ...
SNX18                 0.018   sorting nexin 18 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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