Guide to the Human Genome
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Name: GRID1 Sequence: fasta or formatted (1009aa) NCBI GI: 55770852
Description:

glutamate receptor, ionotropic, delta 1 precursor

Referenced in:

Glutamate

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         78           3
 C cysteine            1.7         17           1
 D aspartate           5.3         53           3
 E glutamate           5.3         53           2
 F phenylalanine       3.8         38           1
 G glycine             5.8         59           2
 H histidine           2.5         25           1
 I isoleucine          5.7         58           2
 K lysine              4.5         45           2
 L leucine            10.6        107           3
 M methionine          2.9         29           1
 N asparagine          4.1         41           2
 P proline             4.6         46           2
 Q glutamine           4.7         47           2
 R arginine            5.1         51           2
 S serine              9.9        100           3
 T threonine           5.5         55           2
 V valine              6.2         63           2
 W tryptophan          1.8         18           2
 Y tyrosine            2.6         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glutamate receptor, ionotropic, delta 1 precursor [H... 
GRID2                 0.574   glutamate receptor, ionotropic, delta 2 
GRIK1                 0.176   glutamate receptor, ionotropic, kainate 1 isoform 1 p...
GRIK1                 0.175   glutamate receptor, ionotropic, kainate 1 isoform 2 ...
GRIK2                 0.169   glutamate receptor, ionotropic, kainate 2 isoform 1 ...
GRIK3                 0.168   glutamate receptor, ionotropic, kainate 3 precursor ...
GRIK2                 0.167   glutamate receptor, ionotropic, kainate 2 isoform 2 ...
GRIA2                 0.163   glutamate receptor, ionotropic, AMPA 2 isoform 2 pr...
GRIA2                 0.163   glutamate receptor, ionotropic, AMPA 2 isoform 1 pre...
GRIA2                 0.160   glutamate receptor, ionotropic, AMPA 2 isoform 3 [H...
GRIA1                 0.159   glutamate receptor, ionotropic, AMPA 1 isoform 2 [H...
GRIA1                 0.158   glutamate receptor, ionotropic, AMPA 1 isoform 1 [H...
GRIA4                 0.154   glutamate receptor, ionotrophic, AMPA 4 isoform 2 p...
GRIA4                 0.154   glutamate receptor, ionotrophic, AMPA 4 isoform 1 p...
GRIA3                 0.152   glutamate receptor, ionotrophic, AMPA 3 isoform 2 p...
GRIA3                 0.152   glutamate receptor, ionotrophic, AMPA 3 isoform 1 p...
GRIK5                 0.137   glutamate receptor KA2 precursor 
GRIK4                 0.137   glutamate receptor KA1 precursor 
GRIN1                 0.089   NMDA receptor 1 isoform NR1-3 precursor 
GRIN1                 0.089   NMDA receptor 1 isoform NR1-1 precursor 
GRIN1                 0.089   NMDA receptor 1 isoform NR1-2 precursor 
GRIN2D                0.070   N-methyl-D-aspartate receptor subunit 2D precursor ...
GRIN2A                0.069   N-methyl-D-aspartate receptor subunit 2A isoform 2 ...
GRIN2A                0.069   N-methyl-D-aspartate receptor subunit 2A isoform 1 ...
GRIN2A                0.069   N-methyl-D-aspartate receptor subunit 2A isoform 1 pr...
GRIN2B                0.069   N-methyl-D-aspartate receptor subunit 2B precursor ...
GRIN2C                0.062   N-methyl-D-aspartate receptor subunit 2C precursor [...
GRIN3B                0.058   glutamate receptor, ionotropic, N-methyl-D-aspartate...
GRIN3A                0.055   glutamate receptor, ionotropic, N-methyl-D-aspartat...
GRIA4                 0.022   glutamate receptor, ionotrophic, AMPA 4 isoform 3 p...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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