Guide to the Human Genome
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Name: RRP12 Sequence: fasta or formatted (1297aa) NCBI GI: 223278379
Description:

ribosomal RNA processing 12 homolog isoform 1

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt prot [1236aa] ribosomal RNA processing 12 homolog isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9        128           2
 C cysteine            1.9         25           1
 D aspartate           3.8         49           2
 E glutamate           8.1        105          11
 F phenylalanine       3.7         48           2
 G glycine             5.8         75           3
 H histidine           2.9         38           2
 I isoleucine          3.4         44           2
 K lysine              7.4         96           3
 L leucine            12.0        155           3
 M methionine          2.3         30           1
 N asparagine          1.9         24           1
 P proline             4.7         61           2
 Q glutamine           3.8         49           1
 R arginine            6.2         81           2
 S serine              7.6         98           2
 T threonine           5.2         68           3
 V valine              7.0         91           2
 W tryptophan          0.8         11           1
 Y tyrosine            1.6         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribosomal RNA processing 12 homolog isoform 1 [Homo... 
RRP12                 0.838   ribosomal RNA processing 12 homolog isoform 2 [Homo...
RPGR                  0.013   retinitis pigmentosa GTPase regulator isoform C [Hom...
LOC651807             0.010   PREDICTED: hypothetical protein 
CALD1                 0.009   caldesmon 1 isoform 1 
WDR87                 0.009   NYD-SP11 protein 
NEFM                  0.009   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.009   neurofilament, medium polypeptide 150kDa isoform 2 ...
MYT1                  0.009   myelin transcription factor 1 
TCHH                  0.009   trichohyalin 
LOXHD1                0.009   lipoxygenase homology domains 1 isoform 1 
GTF2F1                0.009   general transcription factor IIF, polypeptide 1, 74...
ACIN1                 0.008   apoptotic chromatin condensation inducer 1 
LOC728792             0.008   PREDICTED: hypothetical protein 
GIGYF2                0.008   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.008   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.008   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.008   GRB10 interacting GYF protein 2 isoform b 
TRIM44                0.008   DIPB protein 
NSBP1                 0.008   nucleosomal binding protein 1 
PAF1                  0.008   Paf1, RNA polymerase II associated factor, homolog [...
RBM25                 0.008   RNA binding motif protein 25 
PRPF38B               0.008   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
CFDP1                 0.008   craniofacial development protein 1 
FAM9A                 0.008   family with sequence similarity 9, member A 
LOC283685             0.008   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MYST3                 0.008   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.008   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.008   MYST histone acetyltransferase (monocytic leukemia)...
SUPT6H                0.008   suppressor of Ty 6 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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