Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 149192858
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|149192858 family with sequence similarity 89, member B
isoform 1 [Homo sapiens]
(189 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|149192858 family with sequence similarity 89, member B isofor... 392 e-109
gi|22779873 family with sequence similarity 89, member B isoform... 357 3e-99
gi|149192853 family with sequence similarity 89, member B isofor... 197 3e-51
gi|38348390 family with sequence similarity 89, member A [Homo s... 134 6e-32
gi|42822876 hypothetical protein LOC286343 [Homo sapiens] 36 0.017
gi|17738294 cyclin-dependent kinase inhibitor 2A isoform 4 [Homo... 33 0.15
gi|239752278 PREDICTED: hypothetical protein [Homo sapiens] 32 0.25
gi|239746791 PREDICTED: hypothetical protein XP_002343850 [Homo ... 32 0.25
gi|87196343 PDZ domain containing 2 [Homo sapiens] 32 0.25
gi|239753786 PREDICTED: hypothetical protein LOC100129786 [Homo ... 31 0.56
gi|169167301 PREDICTED: hypothetical protein LOC100129786 [Homo ... 31 0.56
gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo ... 31 0.56
gi|169166477 PREDICTED: hypothetical protein LOC100129786 [Homo ... 31 0.56
gi|57165355 latrophilin 1 isoform 1 precursor [Homo sapiens] 31 0.56
gi|41281557 latrophilin 1 isoform 2 precursor [Homo sapiens] 31 0.56
gi|122937424 one cut homeobox 3 [Homo sapiens] 31 0.56
gi|239755705 PREDICTED: hypothetical protein [Homo sapiens] 31 0.73
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 31 0.73
gi|163965434 dapper, antagonist of beta-catenin, homolog 2 [Homo... 31 0.73
gi|239755585 PREDICTED: hypothetical protein [Homo sapiens] 30 0.95
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens] 30 0.95
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens] 30 0.95
gi|239750217 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo ... 30 1.2
gi|23238226 CDC42 effector protein 1 [Homo sapiens] 30 1.2
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 30 1.2
gi|146134388 YLP motif containing 1 [Homo sapiens] 30 1.2
gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens] 30 1.2
gi|187828357 SMAD family member 9 isoform a [Homo sapiens] 30 1.6
gi|5174519 SMAD family member 9 isoform b [Homo sapiens] 30 1.6
>gi|149192858 family with sequence similarity 89, member B isoform 1
[Homo sapiens]
Length = 189
Score = 392 bits (1006), Expect = e-109
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR 60
MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR
Sbjct: 1 MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR 60
Query: 61 APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEMVGLRQLDMSLLCQLWGLYESIQD 120
APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEMVGLRQLDMSLLCQLWGLYESIQD
Sbjct: 61 APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEMVGLRQLDMSLLCQLWGLYESIQD 120
Query: 121 YKHLCQDLSFCQDLSSSLHSDSSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQW 180
YKHLCQDLSFCQDLSSSLHSDSSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQW
Sbjct: 121 YKHLCQDLSFCQDLSSSLHSDSSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQW 180
Query: 181 LQDAFHISL 189
LQDAFHISL
Sbjct: 181 LQDAFHISL 189
>gi|22779873 family with sequence similarity 89, member B isoform 2
[Homo sapiens]
Length = 176
Score = 357 bits (917), Expect = 3e-99
Identities = 176/189 (93%), Positives = 176/189 (93%), Gaps = 13/189 (6%)
Query: 1 MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR 60
MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR
Sbjct: 1 MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR 60
Query: 61 APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEMVGLRQLDMSLLCQLWGLYESIQD 120
APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEM LWGLYESIQD
Sbjct: 61 APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEM-------------LWGLYESIQD 107
Query: 121 YKHLCQDLSFCQDLSSSLHSDSSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQW 180
YKHLCQDLSFCQDLSSSLHSDSSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQW
Sbjct: 108 YKHLCQDLSFCQDLSSSLHSDSSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQW 167
Query: 181 LQDAFHISL 189
LQDAFHISL
Sbjct: 168 LQDAFHISL 176
>gi|149192853 family with sequence similarity 89, member B isoform
3 [Homo sapiens]
Length = 154
Score = 197 bits (502), Expect = 3e-51
Identities = 97/98 (98%), Positives = 98/98 (100%)
Query: 1 MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR 60
MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR
Sbjct: 1 MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR 60
Query: 61 APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEMV 98
APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEM+
Sbjct: 61 APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEML 98
>gi|38348390 family with sequence similarity 89, member A [Homo
sapiens]
Length = 184
Score = 134 bits (336), Expect = 6e-32
Identities = 85/158 (53%), Positives = 98/158 (62%), Gaps = 29/158 (18%)
Query: 9 APGGAG------CALAGLPPLPRGLSGLLN-ASGGS----WRELERVYSQRSRIHDELSR 57
APG AG + GLPPLP+ LSGLL+ ASGG WR LER+Y+Q+SRI DELSR
Sbjct: 7 APGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRIQDELSR 66
Query: 58 AARAPDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEMVGLRQLDMSLLCQLWGLYES 117
GP G A AA P +P NLD+ALA LRKEMVGLRQLDMSLLCQL+ LYES
Sbjct: 67 G-----GP----GGGGARAAALPAKPPNLDAALALLRKEMVGLRQLDMSLLCQLYSLYES 117
Query: 118 IQDYKHLCQDLSFCQDLSSSLHSDSSYPPDAGLSDDEE 155
IQ+YK CQ S D +Y + G D+EE
Sbjct: 118 IQEYKGACQAAS---------SPDCTYALENGFFDEEE 146
>gi|42822876 hypothetical protein LOC286343 [Homo sapiens]
Length = 228
Score = 36.2 bits (82), Expect = 0.017
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 65 PRHAAGAANAGPAAGPRRPVN------LDSALAALRKEMVGLRQLDMSLLCQLWGLYESI 118
P + ++++ P +G R + L++ L LR+EMV LR D+ L+ QL + ESI
Sbjct: 66 PPSLSSSSSSSPTSGSPRGSHSSALERLETKLHLLRQEMVNLRATDVRLMRQLLVINESI 125
Query: 119 QDYKHLCQDLSFCQDLSSSL 138
+ K + ++ + SSL
Sbjct: 126 ESIKWMIEEKATITSRGSSL 145
>gi|17738294 cyclin-dependent kinase inhibitor 2A isoform 4 [Homo
sapiens]
Length = 173
Score = 33.1 bits (74), Expect = 0.15
Identities = 27/67 (40%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 19 GLPPLPR--GLSGLLNASGGSWRELERVYSQRSRIHDELSRAARAPDG-PRHAAGAANAG 75
G PLPR G SGG+ R R H +RA R P G P HA GAA
Sbjct: 97 GQQPLPRRPGHDDGQRPSGGAAAAPRRGAQLRRPRHSHPTRARRCPGGLPGHAGGAAPGR 156
Query: 76 PAAGPRR 82
AAG R
Sbjct: 157 GAAGRAR 163
>gi|239752278 PREDICTED: hypothetical protein [Homo sapiens]
Length = 252
Score = 32.3 bits (72), Expect = 0.25
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 3 GLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGG---SWRELERVYSQRSRIHDELSRAA 59
GLP + APG G LP LP LS + + SGG +W + + E
Sbjct: 168 GLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEPQ 227
Query: 60 RAPDGPRHAAGAANAG 75
A PR A G A G
Sbjct: 228 GARGSPRGADGLAKLG 243
>gi|239746791 PREDICTED: hypothetical protein XP_002343850 [Homo
sapiens]
Length = 252
Score = 32.3 bits (72), Expect = 0.25
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 3 GLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGG---SWRELERVYSQRSRIHDELSRAA 59
GLP + APG G LP LP LS + + SGG +W + + E
Sbjct: 168 GLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEPQ 227
Query: 60 RAPDGPRHAAGAANAG 75
A PR A G A G
Sbjct: 228 GARGSPRGADGLAKLG 243
>gi|87196343 PDZ domain containing 2 [Homo sapiens]
Length = 2839
Score = 32.3 bits (72), Expect = 0.25
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 116 ESIQDYKHLCQDLSFCQDLS---SSLHSDSSYPPDAGLSDDEEPPDASL-------PPDP 165
+SI KH + +F + S SS H DS+ +GL D EP +S+ DP
Sbjct: 1505 DSINPDKHFTVNKNFLSNYSRNFSSFHEDSTSL--SGLGDSTEPSLSSMYGDAEDSSSDP 1562
Query: 166 PPLTVPQTHNARDQWLQDAFHISL 189
LT +ARD W +SL
Sbjct: 1563 ESLTEAPRASARDGWSPPRSRVSL 1586
>gi|239753786 PREDICTED: hypothetical protein LOC100129786 [Homo
sapiens]
Length = 210
Score = 31.2 bits (69), Expect = 0.56
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 46 SQRSRIHDELSRAARAPDGPRHAAGAANAGPAAG---PRRPVNLDSALA 91
S R +L RA ++P PR A G+ PA PR+P N + A A
Sbjct: 115 STRESQETDLRRARQSPRNPRRARGSPGNRPAQSTREPRKPTNAEHARA 163
>gi|169167301 PREDICTED: hypothetical protein LOC100129786 [Homo
sapiens]
Length = 210
Score = 31.2 bits (69), Expect = 0.56
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 46 SQRSRIHDELSRAARAPDGPRHAAGAANAGPAAG---PRRPVNLDSALA 91
S R +L RA ++P PR A G+ PA PR+P N + A A
Sbjct: 115 STRESQETDLRRARQSPRNPRRARGSPGNRPAQSTREPRKPTNAEHARA 163
>gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo
sapiens]
Length = 488
Score = 31.2 bits (69), Expect = 0.56
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 60 RAPDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEMVGLRQLDMSLLCQLWGLYESIQ 119
R+P GP A A + GP G P D L+ +E VG +L+G+Y +Q
Sbjct: 422 RSPPGP--AESARSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSEYSMKLFGVYTKLQ 479
Query: 120 D 120
D
Sbjct: 480 D 480
>gi|169166477 PREDICTED: hypothetical protein LOC100129786 [Homo
sapiens]
Length = 210
Score = 31.2 bits (69), Expect = 0.56
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 46 SQRSRIHDELSRAARAPDGPRHAAGAANAGPAAG---PRRPVNLDSALA 91
S R +L RA ++P PR A G+ PA PR+P N + A A
Sbjct: 115 STRESQETDLRRARQSPRNPRRARGSPGNRPAQSTREPRKPTNAEHARA 163
>gi|57165355 latrophilin 1 isoform 1 precursor [Homo sapiens]
Length = 1474
Score = 31.2 bits (69), Expect = 0.56
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 114 LYESIQDYKHLC--QDLSFCQDLSSSLHSDSSYPPDAGLSDDEEPPDAS-------LPPD 164
LY+S D C +D + + LSS DS Y A L D PD+S LPP
Sbjct: 1353 LYQSDLDESESCTAEDGATSRPLSSPPGRDSLYASGANLRDSPSYPDSSPEGPSEALPPP 1412
Query: 165 PP 166
PP
Sbjct: 1413 PP 1414
>gi|41281557 latrophilin 1 isoform 2 precursor [Homo sapiens]
Length = 1469
Score = 31.2 bits (69), Expect = 0.56
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 114 LYESIQDYKHLC--QDLSFCQDLSSSLHSDSSYPPDAGLSDDEEPPDAS-------LPPD 164
LY+S D C +D + + LSS DS Y A L D PD+S LPP
Sbjct: 1348 LYQSDLDESESCTAEDGATSRPLSSPPGRDSLYASGANLRDSPSYPDSSPEGPSEALPPP 1407
Query: 165 PP 166
PP
Sbjct: 1408 PP 1409
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 31.2 bits (69), Expect = 0.56
Identities = 38/157 (24%), Positives = 52/157 (33%), Gaps = 40/157 (25%)
Query: 14 GCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAARAPDGPRHAAGAAN 73
G G P L G++ LL+ GG G A GA
Sbjct: 37 GLVAPGRPGLVAGMASLLDGGGGG--------------------------GGGGAGGAGG 70
Query: 74 AGPAAGPRRPVNLDSALAALRKEMVGLRQLDMSLLCQ---LWGLYESIQDYKHLCQDLSF 130
AG A G A R E+ G M + C+ L G Y ++ +HL L+
Sbjct: 71 AGSAGGG----------ADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHL-PPLAA 119
Query: 131 CQDLSSSLHSDSSYPPDAGLSDDEEPPDASLPPDPPP 167
D + ++ G P A+ PP PPP
Sbjct: 120 VADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPP 156
>gi|239755705 PREDICTED: hypothetical protein [Homo sapiens]
Length = 306
Score = 30.8 bits (68), Expect = 0.73
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
Query: 142 SSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQWLQDAFHIS 188
SS PP AG + PP +S PP PP R WLQD ++
Sbjct: 74 SSQPPSAGPT----PPPSSRPPPSPP------RRRRPAWLQDEAEVA 110
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 30.8 bits (68), Expect = 0.73
Identities = 31/100 (31%), Positives = 35/100 (35%), Gaps = 14/100 (14%)
Query: 8 EAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSR-----AARAP 62
EAPGG G AG P GL A + R+ EL R AA A
Sbjct: 1330 EAPGGQGRPEAGRPASEARAPGLAAADAADAARAGGKEAPRAAAGSELCRREGPGAAPAF 1389
Query: 63 DGP---------RHAAGAANAGPAAGPRRPVNLDSALAAL 93
GP A AGP GPR P + AA+
Sbjct: 1390 AGPGGGGSGALEAEGRAGARAGPRPGPRPPGGAPARKAAV 1429
>gi|163965434 dapper, antagonist of beta-catenin, homolog 2 [Homo
sapiens]
Length = 774
Score = 30.8 bits (68), Expect = 0.73
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Query: 25 RGLSGLLNASGGSWRELERVYS-QRSRIHDELSRAARAPDGPRHAAGAANAGPAA--GPR 81
R L L A+ +EL+ + + Q+ R+ L A + P P AA GP GP
Sbjct: 16 RRLGARLRAAFAGLQELQGLRATQQERVRGAL--ALQPPPAP-----AAPCGPHGLHGPE 68
Query: 82 RPVNLDSALAALRKEMVGLRQLDMSLLCQL 111
+ L++ALAAL++++ LRQ D+ L L
Sbjct: 69 Q--QLEAALAALQEQLSRLRQQDIGLKTHL 96
>gi|239755585 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 30.4 bits (67), Expect = 0.95
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 30 LLNASGGSWRELERVYSQRSRIHDELSRAARAPDGPRHAAGAANAGPAAGPRRPVNLDSA 89
LL G R++E++ + + APDG H G+ +G AA RP +A
Sbjct: 232 LLPVQSGQQRQVEQLQHRHQHERGQQQLVEGAPDGVGHLHGSRGSGRAATTTRPQTTPAA 291
>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 30.4 bits (67), Expect = 0.95
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 30 LLNASGGSWRELERVYSQRSRIHDELSRAARAPDGPRHAAGAANAGPAAGPRRPVNLDSA 89
LL G R++E++ + + APDG H G+ +G AA RP +A
Sbjct: 232 LLPVQSGQQRQVEQLQHRHQHERGQQQLVEGAPDGVGHLHGSRGSGRAATTTRPQTTPAA 291
>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
Length = 381
Score = 30.4 bits (67), Expect = 0.95
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 30 LLNASGGSWRELERVYSQRSRIHDELSRAARAPDGPRHAAGAANAGPAAGPRRPVNLDSA 89
LL G R++E++ + + APDG H G+ +G AA RP +A
Sbjct: 232 LLPVQSGQQRQVEQLQHRHQHERGQQQLVEGAPDGVGHLHGSRGSGRAATTTRPQTTPAA 291
>gi|239750217 PREDICTED: hypothetical protein [Homo sapiens]
Length = 363
Score = 30.0 bits (66), Expect = 1.2
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
Query: 142 SSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQWLQDAFHIS 188
SS PP AG + PP +S PP PP R WLQD ++
Sbjct: 74 SSPPPSAGPT----PPPSSRPPPSPP------RRRRPAWLQDEAEVA 110
>gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo
sapiens]
Length = 363
Score = 30.0 bits (66), Expect = 1.2
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
Query: 142 SSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQWLQDAFHIS 188
SS PP AG + PP +S PP PP R WLQD ++
Sbjct: 74 SSPPPSAGPT----PPPSSRPPPSPP------RRRRPAWLQDEAEVA 110
>gi|23238226 CDC42 effector protein 1 [Homo sapiens]
Length = 391
Score = 30.0 bits (66), Expect = 1.2
Identities = 39/139 (28%), Positives = 54/139 (38%), Gaps = 23/139 (16%)
Query: 26 GLSGLLNASGGSWRELERVYSQRSRIHDELSRAARAPDGPRHAAGAANAGPAAGPRRPVN 85
G + L+ GGS R S RS + +L R PR A PA P P
Sbjct: 59 GDTSFLSNHGGSSGSTHR--SPRSFLAKKLQLVRRVGAPPRRMASP----PAPSPAPP-- 110
Query: 86 LDSALAALRKEMVGLRQLDMSLLCQLWGLYESIQDYKHLCQDLSFCQDLSSSLHSDSSYP 145
A++ + K + L QL+ + Y+S+ K LSF +SS SSY
Sbjct: 111 ---AISPIIKNAISLPQLNQAA-------YDSLVVGK-----LSFDSSPTSSTDGHSSYG 155
Query: 146 PDAGLSDDEEPPDASLPPD 164
D+G P + P D
Sbjct: 156 LDSGFCTISRLPRSEKPHD 174
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 30.0 bits (66), Expect = 1.2
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 24 PRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAARAPDGPRHAAGAANAGPAAGPRRP 83
P G G++ +G + E+ + R P GPR G A GPR+
Sbjct: 1433 PLGREGIIGPTGRTGPRGEKGF-----------RGETGPQGPRGQPGPPGPPGAPGPRKQ 1481
Query: 84 VNLDSALAALRKEMVGLR 101
+++++A+ AL + L+
Sbjct: 1482 MDINAAIQALIESNTALQ 1499
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 30.0 bits (66), Expect = 1.2
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 156 PPDASLPPDPPPLTVPQTHNA-RDQWLQDAFH 186
PP LPP PPP+ PQT +++W +D+F+
Sbjct: 1550 PPPPPLPP-PPPVIKPQTSAVEQERWDEDSFY 1580
>gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]
Length = 346
Score = 30.0 bits (66), Expect = 1.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 143 SYPPDAGLSDDEEPPDASLPPDPPPLTVP 171
S P GL+ D+EP LPP PPL P
Sbjct: 61 SEPRARGLAGDKEPRAGPLPPPAPPLPPP 89
>gi|187828357 SMAD family member 9 isoform a [Homo sapiens]
Length = 467
Score = 29.6 bits (65), Expect = 1.6
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 135 SSSLHSDSSYPPDAGLSDD-EEPPDASLPPDP 165
S+SLHS+ P +A D ++PP ++LPP P
Sbjct: 162 SASLHSEPLMPHNATYPDSFQQPPCSALPPSP 193
>gi|5174519 SMAD family member 9 isoform b [Homo sapiens]
Length = 430
Score = 29.6 bits (65), Expect = 1.6
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 135 SSSLHSDSSYPPDAGLSDD-EEPPDASLPPDP 165
S+SLHS+ P +A D ++PP ++LPP P
Sbjct: 162 SASLHSEPLMPHNATYPDSFQQPPCSALPPSP 193
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,980,226
Number of Sequences: 37866
Number of extensions: 517818
Number of successful extensions: 3913
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 3749
Number of HSP's gapped (non-prelim): 236
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.