Guide to the Human Genome
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Name: KIAA1383 Sequence: fasta or formatted (1047aa) NCBI GI: 149192843
Description:

hypothetical protein LOC54627

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         67           3
 C cysteine            2.3         24           1
 D aspartate           4.9         51           2
 E glutamate           7.2         75           6
 F phenylalanine       2.3         24           1
 G glycine             4.4         46           3
 H histidine           2.7         28           1
 I isoleucine          4.2         44           2
 K lysine              7.1         74           3
 L leucine             9.9        104           3
 M methionine          1.2         13           1
 N asparagine          4.1         43           2
 P proline             7.3         76           3
 Q glutamine           5.3         55           2
 R arginine            5.8         61           1
 S serine             11.5        120           3
 T threonine           5.9         62           2
 V valine              4.6         48           2
 W tryptophan          0.9          9           2
 Y tyrosine            2.2         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC54627 
DSPP                  0.015   dentin sialophosphoprotein preproprotein 
NKTR                  0.011   natural killer-tumor recognition sequence 
RSF1                  0.010   remodeling and spacing factor 1 
ANKRD12               0.009   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.009   ankyrin repeat domain 12 isoform 1 
NEFH                  0.008   neurofilament, heavy polypeptide 200kDa 
NKAPL                 0.007   NFKB activating protein-like 
LOC100134138          0.007   PREDICTED: similar to mucin, partial 
CARD11                0.007   caspase recruitment domain family, member 11 
PRPF40A               0.007   formin binding protein 3 
SLK                   0.006   serine/threonine kinase 2 
AP3B1                 0.006   adaptor-related protein complex 3, beta 1 subunit [H...
RAD18                 0.006   postreplication repair protein hRAD18p 
RAI14                 0.006   retinoic acid induced 14 isoform d 
RAI14                 0.006   retinoic acid induced 14 isoform c 
RAI14                 0.006   retinoic acid induced 14 isoform a 
RAI14                 0.006   retinoic acid induced 14 isoform a 
RAI14                 0.006   retinoic acid induced 14 isoform a 
RNF219                0.006   ring finger protein 219 
TEX14                 0.006   testis expressed sequence 14 isoform a 
ARID4B                0.006   AT rich interactive domain 4B isoform 2 
ARID4B                0.006   AT rich interactive domain 4B isoform 1 
DMP1                  0.006   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.006   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
LOC100294236          0.006   PREDICTED: similar to diffuse panbronchiolitis crit...
PARG                  0.005   poly (ADP-ribose) glycohydrolase 
MYT1L                 0.005   myelin transcription factor 1-like 
CTTNBP2               0.005   cortactin binding protein 2 
IGSF3                 0.005   immunoglobulin superfamily, member 3 isoform 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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