Guide to the Human Genome
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Name: CARD11 Sequence: fasta or formatted (1154aa) NCBI GI: 157743265
Description:

caspase recruitment domain family, member 11

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         50           2
 C cysteine            2.0         23           1
 D aspartate           6.4         74           3
 E glutamate          10.6        122           3
 F phenylalanine       2.5         29           1
 G glycine             4.4         51           3
 H histidine           2.4         28           2
 I isoleucine          4.2         49           2
 K lysine              6.6         76           2
 L leucine            11.7        135           4
 M methionine          2.7         31           1
 N asparagine          4.1         47           2
 P proline             4.3         50           2
 Q glutamine           4.8         55           3
 R arginine            8.3         96           3
 S serine              7.8         90           5
 T threonine           4.7         54           2
 V valine              4.9         56           2
 W tryptophan          0.4          5           1
 Y tyrosine            2.9         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   caspase recruitment domain family, member 11 
CARD10                0.180   caspase recruitment domain protein 10 
CARD14                0.180   caspase recruitment domain protein 14 isoform 1 [Hom...
CARD9                 0.152   caspase recruitment domain protein 9 isoform 2 [Homo...
CARD9                 0.152   caspase recruitment domain protein 9 isoform 1 [Homo...
CARD14                0.047   caspase recruitment domain protein 14 isoform 2 [Hom...
FILIP1                0.022   filamin A interacting protein 1 
ERC1                  0.021   RAB6-interacting protein 2 isoform epsilon 
GCC2                  0.021   GRIP and coiled-coil domain-containing 2 
CCDC18                0.021   sarcoma antigen NY-SAR-41 
MYH10                 0.019   myosin, heavy polypeptide 10, non-muscle 
CCDC88A               0.019   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.019   coiled-coil domain containing 88A isoform 1 
TCHH                  0.019   trichohyalin 
GOLGB1                0.019   golgi autoantigen, golgin subfamily b, macrogolgin ...
TPM2                  0.018   tropomyosin 2 (beta) isoform 2 
EEA1                  0.018   early endosome antigen 1, 162kD 
MYH11                 0.018   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.018   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.018   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.018   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
ERC2                  0.018   cytomatrix protein p110 
LOC283767             0.018   golgi autoantigen, golgin subfamily a-like 
LOC727832             0.018   golgi autoantigen, golgin subfamily a-like 
MYH9                  0.018   myosin, heavy polypeptide 9, non-muscle 
MYH3                  0.018   myosin, heavy chain 3, skeletal muscle, embryonic [H...
CCDC110               0.018   coiled-coil domain containing 110 isoform b 
CCDC110               0.018   coiled-coil domain containing 110 isoform a 
CCDC88C               0.018   DVL-binding protein DAPLE 
TPM3                  0.017   tropomyosin 3 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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