Guide to the Human Genome
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Name: NECAB3 Sequence: fasta or formatted (396aa) NCBI GI: 149158723
Description:

N-terminal EF-hand calcium binding protein 3 isoform 2

Referenced in:

Additional Brain Proteins
Synapses

Other entries for this name:
alt prot [362aa] N-terminal EF-hand calcium binding protein 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         36           2
 C cysteine            2.0          8           1
 D aspartate           5.8         23           2
 E glutamate           6.8         27           2
 F phenylalanine       4.0         16           2
 G glycine             6.6         26           2
 H histidine           3.3         13           1
 I isoleucine          1.5          6           1
 K lysine              2.5         10           1
 L leucine            11.4         45           2
 M methionine          1.5          6           1
 N asparagine          2.0          8           3
 P proline             7.1         28           2
 Q glutamine           7.1         28           2
 R arginine            7.8         31           2
 S serine              8.3         33           2
 T threonine           4.0         16           2
 V valine              5.1         20           1
 W tryptophan          2.3          9           2
 Y tyrosine            1.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   N-terminal EF-hand calcium binding protein 3 isofor... 
NECAB3                0.875   N-terminal EF-hand calcium binding protein 3 isofor...
NECAB1                0.338   N-terminal EF-hand calcium binding protein 1 
NECAB2                0.279   neuronal calcium-binding protein 2 
PLCD1                 0.018   phospholipase C, delta 1 isoform 2 
PLCD1                 0.018   phospholipase C, delta 1 isoform 1 
LAMA5                 0.014   laminin alpha 5 
SLC25A24              0.013   solute carrier family 25 member 24 isoform 1 
C19orf55              0.013   hypothetical protein LOC148137 
S100G                 0.011   calbindin 3 
PLCD4                 0.011   phospholipase C, delta 4 
VASP                  0.011   vasodilator-stimulated phosphoprotein 
ZNF469                0.011   zinc finger protein 469 
ZC3H4                 0.011   zinc finger CCCH-type containing 4 
SLC25A24              0.011   solute carrier family 25 member 24 isoform 2 
LOC100292576          0.010   PREDICTED: hypothetical protein 
LOC100288860          0.010   PREDICTED: hypothetical protein 
LOC100288860          0.010   PREDICTED: hypothetical protein XP_002343712 
DST                   0.010   dystonin isoform 4 
DST                   0.010   dystonin isoform 3 
DST                   0.010   dystonin isoform 2 
DST                   0.010   dystonin isoform 1 
DST                   0.010   dystonin isoform 1eA precursor 
ARHGAP30              0.010   Rho GTPase activating protein 30 isoform 2 
ARHGAP30              0.010   Rho GTPase activating protein 30 isoform 1 
MACF1                 0.010   microfilament and actin filament cross-linker protei...
MACF1                 0.010   microfilament and actin filament cross-linker protei...
EPS8L1                0.010   epidermal growth factor receptor pathway substrate ...
EPS8L1                0.010   epidermal growth factor receptor pathway substrate ...
DMD                   0.009   dystrophin Dp427c isoform 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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