Guide to the Human Genome
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Name: NECAB3 Sequence: fasta or formatted (362aa) NCBI GI: 149158725
Description:

N-terminal EF-hand calcium binding protein 3 isoform 1

Referenced in:

Additional Brain Proteins
Synapses

Other entries for this name:
alt prot [396aa] N-terminal EF-hand calcium binding protein 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         35           2
 C cysteine            1.9          7           1
 D aspartate           6.4         23           2
 E glutamate           7.2         26           2
 F phenylalanine       4.4         16           2
 G glycine             5.5         20           1
 H histidine           3.0         11           1
 I isoleucine          1.7          6           1
 K lysine              2.5          9           1
 L leucine            12.4         45           2
 M methionine          1.7          6           1
 N asparagine          2.2          8           3
 P proline             5.0         18           2
 Q glutamine           7.5         27           2
 R arginine            8.0         29           2
 S serine              8.3         30           2
 T threonine           4.4         16           2
 V valine              4.7         17           1
 W tryptophan          1.9          7           2
 Y tyrosine            1.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   N-terminal EF-hand calcium binding protein 3 isofor... 
NECAB3                0.976   N-terminal EF-hand calcium binding protein 3 isofor...
NECAB1                0.402   N-terminal EF-hand calcium binding protein 1 
NECAB2                0.327   neuronal calcium-binding protein 2 
PLCD1                 0.020   phospholipase C, delta 1 isoform 2 
PLCD1                 0.020   phospholipase C, delta 1 isoform 1 
LAMA5                 0.016   laminin alpha 5 
TPR                   0.014   nuclear pore complex-associated protein TPR 
SLC25A24              0.014   solute carrier family 25 member 24 isoform 1 
S100G                 0.013   calbindin 3 
DMD                   0.013   dystrophin Dp427c isoform 
DMD                   0.013   dystrophin Dp116 isoform 
DMD                   0.013   dystrophin Dp260-2 isoform 
DMD                   0.013   dystrophin Dp260-1 isoform 
DMD                   0.013   dystrophin Dp427p2 isoform 
DMD                   0.013   dystrophin Dp427p1 isoform 
PLCD4                 0.013   phospholipase C, delta 4 
DMD                   0.013   dystrophin Dp71a isoform 
DMD                   0.013   dystrophin Dp71 isoform 
DMD                   0.013   dystrophin Dp140 isoform 
DMD                   0.013   dystrophin Dp427l isoform 
DMD                   0.013   dystrophin Dp427m isoform 
ZC3H4                 0.013   zinc finger CCCH-type containing 4 
SLC25A24              0.013   solute carrier family 25 member 24 isoform 2 
DST                   0.011   dystonin isoform 4 
DST                   0.011   dystonin isoform 3 
DST                   0.011   dystonin isoform 2 
DST                   0.011   dystonin isoform 1 
DST                   0.011   dystonin isoform 1eA precursor 
DMD                   0.011   dystrophin Dp140ab isoform 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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