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Search of human proteins with 148839362
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148839362 LSM14 homolog B [Homo sapiens]
(385 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148839362 LSM14 homolog B [Homo sapiens] 769 0.0
gi|166197712 LSM14 homolog A isoform a [Homo sapiens] 343 2e-94
gi|166197710 LSM14 homolog A isoform b [Homo sapiens] 343 2e-94
gi|60302875 shugoshin-like 1 isoform A1 [Homo sapiens] 39 0.006
gi|60302870 shugoshin-like 1 isoform A2 [Homo sapiens] 39 0.006
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1... 37 0.023
gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precu... 37 0.030
gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2 pre... 37 0.030
gi|30061565 La ribonucleoprotein domain family member 2 isoform ... 37 0.039
gi|30061569 La ribonucleoprotein domain family member 2 isoform ... 37 0.039
gi|30061567 La ribonucleoprotein domain family member 2 isoform ... 37 0.039
gi|55769552 polymerase (RNA) III (DNA directed) polypeptide D [H... 36 0.067
gi|182765442 homeobox A10 isoform a [Homo sapiens] 35 0.087
gi|239755394 PREDICTED: hypothetical protein [Homo sapiens] 35 0.11
gi|239744215 PREDICTED: hypothetical protein [Homo sapiens] 35 0.11
gi|54633315 deoxynucleotidyltransferase, terminal, interacting p... 35 0.15
gi|58535453 CDK5 regulatory subunit associated protein 2 isoform... 34 0.19
gi|58535451 CDK5 regulatory subunit associated protein 2 isoform... 34 0.19
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 34 0.19
gi|192807334 arsenate resistance protein 2 isoform d [Homo sapiens] 34 0.25
gi|58331218 arsenate resistance protein 2 isoform a [Homo sapiens] 34 0.25
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 34 0.25
gi|4507677 heat shock protein 90kDa beta, member 1 [Homo sapiens] 34 0.25
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 33 0.33
gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens] 33 0.33
gi|238908501 sciellin isoform 3 [Homo sapiens] 33 0.43
gi|4506321 protein tyrosine phosphatase, receptor type, N precur... 33 0.43
gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapi... 33 0.43
gi|167234419 thyroid hormone receptor associated protein 3 [Homo... 33 0.43
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 33 0.57
>gi|148839362 LSM14 homolog B [Homo sapiens]
Length = 385
Score = 769 bits (1985), Expect = 0.0
Identities = 385/385 (100%), Positives = 385/385 (100%)
Query: 1 MSGSSGTPYLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPR 60
MSGSSGTPYLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPR
Sbjct: 1 MSGSSGTPYLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPR 60
Query: 61 EEIYEYIIFRGSDIKDITVCEPPKAQHTLPQDPAIVQSSLGSASASPFQPHVPYSPFRGM 120
EEIYEYIIFRGSDIKDITVCEPPKAQHTLPQDPAIVQSSLGSASASPFQPHVPYSPFRGM
Sbjct: 61 EEIYEYIIFRGSDIKDITVCEPPKAQHTLPQDPAIVQSSLGSASASPFQPHVPYSPFRGM 120
Query: 121 APYGPLAASSLLSQQYAASLGLGAGFPSIPVGKSPMVEQAVQTGSADNLNAKKLLPGKGT 180
APYGPLAASSLLSQQYAASLGLGAGFPSIPVGKSPMVEQAVQTGSADNLNAKKLLPGKGT
Sbjct: 121 APYGPLAASSLLSQQYAASLGLGAGFPSIPVGKSPMVEQAVQTGSADNLNAKKLLPGKGT 180
Query: 181 TGTQLNGRQAQPSSKTASDVVQPAAVQAQGQVNDENRRPQRRRSGNRRTRNRSRGQNRPT 240
TGTQLNGRQAQPSSKTASDVVQPAAVQAQGQVNDENRRPQRRRSGNRRTRNRSRGQNRPT
Sbjct: 181 TGTQLNGRQAQPSSKTASDVVQPAAVQAQGQVNDENRRPQRRRSGNRRTRNRSRGQNRPT 240
Query: 241 NVKENTIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDKAEKGEEKDLAVVTQSAEAP 300
NVKENTIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDKAEKGEEKDLAVVTQSAEAP
Sbjct: 241 NVKENTIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDKAEKGEEKDLAVVTQSAEAP 300
Query: 301 AEEDLLGPNCYYDKSKSFFDNISSELKTSSRRTTWAEERKLNTETFGVSGRFLRGRSSRG 360
AEEDLLGPNCYYDKSKSFFDNISSELKTSSRRTTWAEERKLNTETFGVSGRFLRGRSSRG
Sbjct: 301 AEEDLLGPNCYYDKSKSFFDNISSELKTSSRRTTWAEERKLNTETFGVSGRFLRGRSSRG 360
Query: 361 GFRGGRGNGTTRRNPTSHRAGTGRV 385
GFRGGRGNGTTRRNPTSHRAGTGRV
Sbjct: 361 GFRGGRGNGTTRRNPTSHRAGTGRV 385
>gi|166197712 LSM14 homolog A isoform a [Homo sapiens]
Length = 463
Score = 343 bits (879), Expect = 2e-94
Identities = 219/441 (49%), Positives = 261/441 (59%), Gaps = 87/441 (19%)
Query: 4 SSGTPYLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPREEI 63
S GTPY+GSKISLISKA+IRYEGILYTIDT+NSTVALAKVRSFGTEDRPTDRP PPR+E+
Sbjct: 2 SGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEV 61
Query: 64 YEYIIFRGSDIKDITVCEPPKAQHTLPQDPAIVQSSLGSASASPFQPHVPYSPFRGMAPY 123
+EYIIFRGSDIKD+TVCEPPK Q +LPQDPAIVQSSLGS S S FQ Y PF M Y
Sbjct: 62 FEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQSSLGS-STSSFQSMGSYGPFGRMPTY 120
Query: 124 GPLAASSLLSQQYAA----------------------------------------SLGLG 143
+ SSL+ QQ+ A L G
Sbjct: 121 SQFSPSSLVGQQFGAVGVAGSSLTSFGTETSNSGTLPQSSAVGSAFTQDTRSLKTQLSQG 180
Query: 144 AGFPSI-PVGKSPMVEQAVQTGSADNLNAKKLLPGKGTTG--TQLNGRQAQPSSKTASD- 199
P + P+ KSP +EQAVQT SA LP G + ++ R +S+ A +
Sbjct: 181 RSSPQLDPLRKSPTMEQAVQTASAH-------LPAPAAVGRRSPVSTRPLPSASQKAGEN 233
Query: 200 ------VVQPAAVQAQGQVNDENRR---------PQRRRSGNRRTRNRSRGQNRPTNVKE 244
V + Q+ ++N+R P+R R G+R R R + ++
Sbjct: 234 QEHRRAEVHKVSRPENEQLRNDNKRQVAPGAPSAPRRGRGGHRGGRGRFGIR------RD 287
Query: 245 NTIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDKAEK------GEEK-DLAVVTQSA 297
+KFE DFDFESANAQFN+EE+D+EF KL K+DK EK GE+K D V TQ++
Sbjct: 288 GPMKFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNS 347
Query: 298 EAPA-EEDLLGPNCYYDKSKSFFDNISSELKTSSRRTTWAEERKLNTETFGVSGRFLRGR 356
E A EED LGPNCYYDK+KSFFDNIS + RR TWAEER+LN ETFG+ R RGR
Sbjct: 348 EGNADEEDPLGPNCYYDKTKSFFDNISCD-DNRERRPTWAEERRLNAETFGIPLRPNRGR 406
Query: 357 SS-RG----GFRGGRGNGTTR 372
RG GFRGGRG G R
Sbjct: 407 GGYRGRGGLGFRGGRGRGGGR 427
>gi|166197710 LSM14 homolog A isoform b [Homo sapiens]
Length = 463
Score = 343 bits (879), Expect = 2e-94
Identities = 219/441 (49%), Positives = 261/441 (59%), Gaps = 87/441 (19%)
Query: 4 SSGTPYLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPREEI 63
S GTPY+GSKISLISKA+IRYEGILYTIDT+NSTVALAKVRSFGTEDRPTDRP PPR+E+
Sbjct: 2 SGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEV 61
Query: 64 YEYIIFRGSDIKDITVCEPPKAQHTLPQDPAIVQSSLGSASASPFQPHVPYSPFRGMAPY 123
+EYIIFRGSDIKD+TVCEPPK Q +LPQDPAIVQSSLGS S S FQ Y PF M Y
Sbjct: 62 FEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQSSLGS-STSSFQSMGSYGPFGRMPTY 120
Query: 124 GPLAASSLLSQQYAA----------------------------------------SLGLG 143
+ SSL+ QQ+ A L G
Sbjct: 121 SQFSPSSLVGQQFGAVGVAGSSLTSFGTETSNSGTLPQSSAVGSAFTQDTRSLKTQLSQG 180
Query: 144 AGFPSI-PVGKSPMVEQAVQTGSADNLNAKKLLPGKGTTG--TQLNGRQAQPSSKTASD- 199
P + P+ KSP +EQAVQT SA LP G + ++ R +S+ A +
Sbjct: 181 RSSPQLDPLRKSPTMEQAVQTASAH-------LPAPAAVGRRSPVSTRPLPSASQKAGEN 233
Query: 200 ------VVQPAAVQAQGQVNDENRR---------PQRRRSGNRRTRNRSRGQNRPTNVKE 244
V + Q+ ++N+R P+R R G+R R R + ++
Sbjct: 234 QEHRRAEVHKVSRPENEQLRNDNKRQVAPGAPSAPRRGRGGHRGGRGRFGIR------RD 287
Query: 245 NTIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDKAEK------GEEK-DLAVVTQSA 297
+KFE DFDFESANAQFN+EE+D+EF KL K+DK EK GE+K D V TQ++
Sbjct: 288 GPMKFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNS 347
Query: 298 EAPA-EEDLLGPNCYYDKSKSFFDNISSELKTSSRRTTWAEERKLNTETFGVSGRFLRGR 356
E A EED LGPNCYYDK+KSFFDNIS + RR TWAEER+LN ETFG+ R RGR
Sbjct: 348 EGNADEEDPLGPNCYYDKTKSFFDNISCD-DNRERRPTWAEERRLNAETFGIPLRPNRGR 406
Query: 357 SS-RG----GFRGGRGNGTTR 372
RG GFRGGRG G R
Sbjct: 407 GGYRGRGGLGFRGGRGRGGGR 427
>gi|60302875 shugoshin-like 1 isoform A1 [Homo sapiens]
Length = 527
Score = 39.3 bits (90), Expect = 0.006
Identities = 31/135 (22%), Positives = 65/135 (48%), Gaps = 8/135 (5%)
Query: 185 LNGRQAQPSS--KTASDVVQPAAVQAQGQVND--ENRRPQRRRSGNRRTRNRSRGQNRPT 240
L+ + QP + KT D+++ + Q + + D E +R ++R++ R+++ S+ + +
Sbjct: 255 LSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANRRKSKRMSKYKENKS 314
Query: 241 NVKENTIKFEGDFDFESANA-QFNREELDK--EFKKKLNFKDDKAEKGEEKDLAVVTQSA 297
K+ + + S +A FN EE F++K++ D E+ E ++++ S
Sbjct: 315 ENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVS-NDSNREENNESEVSLCESSG 373
Query: 298 EAPAEEDLLGPNCYY 312
+DL P C Y
Sbjct: 374 SGDDSDDLYLPTCKY 388
>gi|60302870 shugoshin-like 1 isoform A2 [Homo sapiens]
Length = 561
Score = 39.3 bits (90), Expect = 0.006
Identities = 31/135 (22%), Positives = 65/135 (48%), Gaps = 8/135 (5%)
Query: 185 LNGRQAQPSS--KTASDVVQPAAVQAQGQVND--ENRRPQRRRSGNRRTRNRSRGQNRPT 240
L+ + QP + KT D+++ + Q + + D E +R ++R++ R+++ S+ + +
Sbjct: 255 LSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANRRKSKRMSKYKENKS 314
Query: 241 NVKENTIKFEGDFDFESANA-QFNREELDK--EFKKKLNFKDDKAEKGEEKDLAVVTQSA 297
K+ + + S +A FN EE F++K++ D E+ E ++++ S
Sbjct: 315 ENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVS-NDSNREENNESEVSLCESSG 373
Query: 298 EAPAEEDLLGPNCYY 312
+DL P C Y
Sbjct: 374 SGDDSDDLYLPTCKY 388
>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
[Homo sapiens]
Length = 651
Score = 37.4 bits (85), Expect = 0.023
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 22/181 (12%)
Query: 215 ENRRPQRRRSGNRRTRNRSRGQNRPTNVKENTIKFEGDFDFESANAQFNRE--ELDKEFK 272
+N++ + + + +G ++ E K + D + +A+ N E E++ + +
Sbjct: 432 DNKKSVKNDEESTDADSEPKGDSKKGKKDEKKGKKDSKKDDKKKDAKKNAESTEMESDLE 491
Query: 273 KKLNFKDDKAEKGEEKDLAVVTQSAEAPAEEDLLGPNCYYDKSKSFFDNISSELKTSSRR 332
K + K K +KG +KD+ + A +D + +D+S S+++K S
Sbjct: 492 LKKDKKHSKEKKGSKKDI-------KKDARKDTESTDAEFDESSKTGFKTSTKIKGSD-- 542
Query: 333 TTWAEE-------RKLNTETFGVSGRF-LRGRSSRGGFRGGRGNGTTRRNPTSHRAGTGR 384
T +EE +K E+ G S + G S+ GFR + T N +A TGR
Sbjct: 543 -TESEESLYKPGAKKKIDESDGTSANSKMEGLESKRGFR--MSSKKTTFNEKGEKASTGR 599
Query: 385 V 385
V
Sbjct: 600 V 600
>gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1
precursor [Homo sapiens]
Length = 513
Score = 37.0 bits (84), Expect = 0.030
Identities = 49/215 (22%), Positives = 93/215 (43%), Gaps = 34/215 (15%)
Query: 159 QAVQTGSADNLNAKKL---LPGKGTTGTQLNGRQAQPSSKTASDVVQPAAVQAQGQVNDE 215
+ V++ S +N N++ P + + G + S + + +V P++ +Q +
Sbjct: 289 EEVKSDSTENSNSRDTGLSQPRRDSKGDSQEDSKENLSQEESQNVDGPSSESSQ----EA 344
Query: 216 NRRPQRRRSGNRR-TRNRSRGQNR-PTNV----KENTIKFEGDFD--FESANAQFNREEL 267
N Q S ++ + SRG N PT +E++ E D + ++ E+
Sbjct: 345 NLSSQENSSESQEEVVSESRGDNPDPTTSYVEDQEDSDSSEEDSSHTLSHSKSESREEQA 404
Query: 268 DKEFKKKLNFKDDKAEKGEEKD-----------LAVVTQSAEAPAEEDLLGPNCYYDKSK 316
D E + LNF ++ E E+++ + +QS E+ +EED + D S+
Sbjct: 405 DSESSESLNFSEESPESPEDENSSSQEGLQSHSSSAESQSEESHSEED---DSDSQDSSR 461
Query: 317 SFFDNISSELKTSSR-----RTTWAEERKLNTETF 346
S D+ S+E K+SS + E RKL + +
Sbjct: 462 SKEDSNSTESKSSSEEDGQLKNIEIESRKLTVDAY 496
>gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2
precursor [Homo sapiens]
Length = 497
Score = 37.0 bits (84), Expect = 0.030
Identities = 49/215 (22%), Positives = 93/215 (43%), Gaps = 34/215 (15%)
Query: 159 QAVQTGSADNLNAKKL---LPGKGTTGTQLNGRQAQPSSKTASDVVQPAAVQAQGQVNDE 215
+ V++ S +N N++ P + + G + S + + +V P++ +Q +
Sbjct: 273 EEVKSDSTENSNSRDTGLSQPRRDSKGDSQEDSKENLSQEESQNVDGPSSESSQ----EA 328
Query: 216 NRRPQRRRSGNRR-TRNRSRGQNR-PTNV----KENTIKFEGDFD--FESANAQFNREEL 267
N Q S ++ + SRG N PT +E++ E D + ++ E+
Sbjct: 329 NLSSQENSSESQEEVVSESRGDNPDPTTSYVEDQEDSDSSEEDSSHTLSHSKSESREEQA 388
Query: 268 DKEFKKKLNFKDDKAEKGEEKD-----------LAVVTQSAEAPAEEDLLGPNCYYDKSK 316
D E + LNF ++ E E+++ + +QS E+ +EED + D S+
Sbjct: 389 DSESSESLNFSEESPESPEDENSSSQEGLQSHSSSAESQSEESHSEED---DSDSQDSSR 445
Query: 317 SFFDNISSELKTSSR-----RTTWAEERKLNTETF 346
S D+ S+E K+SS + E RKL + +
Sbjct: 446 SKEDSNSTESKSSSEEDGQLKNIEIESRKLTVDAY 480
>gi|30061565 La ribonucleoprotein domain family member 2 isoform 2
[Homo sapiens]
Length = 522
Score = 36.6 bits (83), Expect = 0.039
Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 30/160 (18%)
Query: 233 SRGQNRPTNVKENTIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDKAEKGEEKDLA- 291
S+G +P N KE K E + +S NRE K N +D+A+ ++ A
Sbjct: 20 SQGNKKPQNRKEKEEKVEKRSNSDSKE---NRET--KLNGPGENVSEDEAQSSNQRKRAN 74
Query: 292 -----------VVTQSAEAPAEEDLLGPNCYYDKSKSFFDNISSELKTSSRRTTWAEERK 340
V ++S E P + C + +K +N ++ ++ W +R+
Sbjct: 75 KHKWVPLHLDVVRSESQERPGSRN--SSRCQPEANKPTHNNRRNDTRS------WKRDRE 126
Query: 341 LNTETFGVSGRFLRGRSSRGGFRG-----GRGNGTTRRNP 375
+ VS G + RG FRG GRG G R NP
Sbjct: 127 KRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNP 166
>gi|30061569 La ribonucleoprotein domain family member 2 isoform 3
[Homo sapiens]
Length = 358
Score = 36.6 bits (83), Expect = 0.039
Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 30/160 (18%)
Query: 233 SRGQNRPTNVKENTIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDKAEKGEEKDLA- 291
S+G +P N KE K E + +S NRE K N +D+A+ ++ A
Sbjct: 20 SQGNKKPQNRKEKEEKVEKRSNSDSKE---NRET--KLNGPGENVSEDEAQSSNQRKRAN 74
Query: 292 -----------VVTQSAEAPAEEDLLGPNCYYDKSKSFFDNISSELKTSSRRTTWAEERK 340
V ++S E P + C + +K +N ++ ++ W +R+
Sbjct: 75 KHKWVPLHLDVVRSESQERPGSRN--SSRCQPEANKPTHNNRRNDTRS------WKRDRE 126
Query: 341 LNTETFGVSGRFLRGRSSRGGFRG-----GRGNGTTRRNP 375
+ VS G + RG FRG GRG G R NP
Sbjct: 127 KRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNP 166
>gi|30061567 La ribonucleoprotein domain family member 2 isoform 1
[Homo sapiens]
Length = 914
Score = 36.6 bits (83), Expect = 0.039
Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 30/160 (18%)
Query: 233 SRGQNRPTNVKENTIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDKAEKGEEKDLA- 291
S+G +P N KE K E + +S NRE K N +D+A+ ++ A
Sbjct: 20 SQGNKKPQNRKEKEEKVEKRSNSDSKE---NRET--KLNGPGENVSEDEAQSSNQRKRAN 74
Query: 292 -----------VVTQSAEAPAEEDLLGPNCYYDKSKSFFDNISSELKTSSRRTTWAEERK 340
V ++S E P + C + +K +N ++ ++ W +R+
Sbjct: 75 KHKWVPLHLDVVRSESQERPGSRN--SSRCQPEANKPTHNNRRNDTRS------WKRDRE 126
Query: 341 LNTETFGVSGRFLRGRSSRGGFRG-----GRGNGTTRRNP 375
+ VS G + RG FRG GRG G R NP
Sbjct: 127 KRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNP 166
>gi|55769552 polymerase (RNA) III (DNA directed) polypeptide D [Homo
sapiens]
Length = 398
Score = 35.8 bits (81), Expect = 0.067
Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 4/151 (2%)
Query: 139 SLGLGAGFPSIPVGKSPMVEQAVQTGSADNLNAKKLLPGKGTTGTQLNGRQAQPSSKTAS 198
S G AG PS P G P++ A G A L PG+ + + KT +
Sbjct: 2 SEGNAAGEPSTPGGPRPLLTGA--RGLIGRRPAPPLTPGRLPSIRSRDLTLGGVKKKTFT 59
Query: 199 DVVQPAAVQAQGQVNDENRRPQRRRSGNRRTRNRSRGQNRPTNVKENTIKFEGDFDFESA 258
+ ++ + + ++ +R R +R+ RG+ RP ++ ++I +G +
Sbjct: 60 PNIISRKIKEEPKEEVTVKKEKRERDRDRQREGHGRGRGRPEVIQSHSIFEQGPAEMMKK 119
Query: 259 NAQFNR--EELDKEFKKKLNFKDDKAEKGEE 287
+++ + D +N K +K E EE
Sbjct: 120 KGNWDKTVDVSDMGPSHIINIKKEKRETDEE 150
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 35.4 bits (80), Expect = 0.087
Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 30/169 (17%)
Query: 125 PLAASSLLSQQYAASLGLGAG-----------FPSIPVGKSPMVEQAVQTGSADNLNAKK 173
P+ LSQ Y + G G+G FP+ P G+ + A+ +GSAD ++
Sbjct: 209 PVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRGFDLPPALASGSADAARKER 268
Query: 174 LL--PGKGT----TGTQLNGRQAQPSSKTASDVVQPAAVQAQGQVNDENRRPQRRRSGNR 227
L P T +G G + +S +A++ + PA ++ P++ GN
Sbjct: 269 ALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSES------SKASPEKDSLGNS 322
Query: 228 RTRN-------RSRGQNRPTNVKENTIKFEGDFDFESANAQFNREELDK 269
+ N +S + R K T++ E +F F + R E+ +
Sbjct: 323 KGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISR 371
>gi|239755394 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 35.0 bits (79), Expect = 0.11
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 107 PFQPHVPYSPFRGMAPYGPLAASSLLSQQYAASLGLGAGFPSIPVGKSPM----VEQAVQ 162
P+ P P P +G+ G L+ GLG KSP+ Q Q
Sbjct: 10 PWAPAAP-GPAQGVQRGGGAGVLLGLTASAVQKPGLGRACKEGRQRKSPLRTLRSNQEEQ 68
Query: 163 TGSADNLNAKKLLPGKGTTGTQLNGRQAQPSSKTASDVVQPAAVQAQGQVNDENRRPQRR 222
D N ++ PG+ +Q + ++ A ++PAA +G E ++ +R
Sbjct: 69 EEEEDEQNGRRHQPGR---------KQGRAQARPARSPLRPAATACKGDDRGERKKGRRG 119
Query: 223 RSGNRRTRNRS----RGQNRPTNVKENTIK 248
G R R S G+ +P+ ++E + K
Sbjct: 120 NPGTRSRRITSSLWASGRPKPSQLRERSGK 149
>gi|239744215 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 35.0 bits (79), Expect = 0.11
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 107 PFQPHVPYSPFRGMAPYGPLAASSLLSQQYAASLGLGAGFPSIPVGKSPM----VEQAVQ 162
P+ P P P +G+ G L+ GLG KSP+ Q Q
Sbjct: 10 PWAPAAP-GPAQGVQRGGGAGVLLGLTASAVQKPGLGRACKEGRQRKSPLRTLRSNQEEQ 68
Query: 163 TGSADNLNAKKLLPGKGTTGTQLNGRQAQPSSKTASDVVQPAAVQAQGQVNDENRRPQRR 222
D N ++ PG+ +Q + ++ A ++PAA +G E ++ +R
Sbjct: 69 EEEEDEQNGRRHQPGR---------KQGRAQARPARSPLRPAATACKGDDRGERKKGRRG 119
Query: 223 RSGNRRTRNRS----RGQNRPTNVKENTIK 248
G R R S G+ +P+ ++E + K
Sbjct: 120 NPGTRSRRITSSLWASGRPKPSQLRERSGK 149
>gi|54633315 deoxynucleotidyltransferase, terminal, interacting
protein 2 [Homo sapiens]
Length = 756
Score = 34.7 bits (78), Expect = 0.15
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 151 VGKSPMVEQAVQTGSADNLNAKKLLPGKGTTGTQLNGRQAQPSSKTASDVVQPAAVQAQG 210
V +S + ++Q SA++ K NG QA P S T SD A Q G
Sbjct: 3 VTRSARAKASIQAASAESSGQKSFAA---------NGIQAHPESSTGSDARTTAESQTTG 53
Query: 211 QVNDENRRPQRRRSGNRRTRNRSRGQNRPTN 241
+ + R P+ R+ +R T + +G T+
Sbjct: 54 KQSLIPRTPKARKRKSRTTGSLPKGTEPSTD 84
>gi|58535453 CDK5 regulatory subunit associated protein 2 isoform b
[Homo sapiens]
Length = 1814
Score = 34.3 bits (77), Expect = 0.19
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 256 ESANAQFNREELDKEFKKKLNFKDDKAEKGEEKDLAVVTQSAEAPAEEDLLGPNCYYDKS 315
ES N+E++ K + N KD +K EKDL V+ Q+ A EDL +S
Sbjct: 467 ESNKKLHNQEQVIKHLTESTNQKDVLLQKFNEKDLEVIQQNCYLMAAEDL------ELRS 520
Query: 316 KSFFDNISSELKTSSRRTTWAEERKLNTE 344
+ S + +T +++E+K +++
Sbjct: 521 EGLITEKCSSQQPPGSKTIFSKEKKQSSD 549
>gi|58535451 CDK5 regulatory subunit associated protein 2 isoform a
[Homo sapiens]
Length = 1893
Score = 34.3 bits (77), Expect = 0.19
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 256 ESANAQFNREELDKEFKKKLNFKDDKAEKGEEKDLAVVTQSAEAPAEEDLLGPNCYYDKS 315
ES N+E++ K + N KD +K EKDL V+ Q+ A EDL +S
Sbjct: 467 ESNKKLHNQEQVIKHLTESTNQKDVLLQKFNEKDLEVIQQNCYLMAAEDL------ELRS 520
Query: 316 KSFFDNISSELKTSSRRTTWAEERKLNTE 344
+ S + +T +++E+K +++
Sbjct: 521 EGLITEKCSSQQPPGSKTIFSKEKKQSSD 549
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 34.3 bits (77), Expect = 0.19
Identities = 41/187 (21%), Positives = 73/187 (39%), Gaps = 22/187 (11%)
Query: 214 DENRRPQRRRSGNRRTRNRSRGQNRPTNVKENTIKFEGDFDFESANAQFNRE-----ELD 268
+ R + R+ R R R R + R +E + E D + + ++ RE E D
Sbjct: 405 ERERERENRQRERERERERDRERERRQREREREREHERDKERQRRKEEWERERAKRDEKD 464
Query: 269 KEFKKKLNFKDDKAEKGEEKDLA--VVTQSAEAPAEE-DLLGPNCY--------YDKSKS 317
++ + + K+ + EKG+ K + ++ AE P +E GP + +SKS
Sbjct: 465 RQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAATTGPQVKRADEWKDPWRRSKS 524
Query: 318 FFDNISSELKTSSRRTTWAEERKLNTETFGVSGRFLRGRSSRGGFRGGRGNGTTRRNPTS 377
+ + S R R+ T S SSR G G+ +R +S
Sbjct: 525 PKKKLGVSVSPSRAR------RRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSS 578
Query: 378 HRAGTGR 384
+ + + R
Sbjct: 579 YSSYSSR 585
>gi|192807334 arsenate resistance protein 2 isoform d [Homo sapiens]
Length = 872
Score = 33.9 bits (76), Expect = 0.25
Identities = 20/102 (19%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 186 NGRQAQPSSKTASDVVQPAAVQAQGQVNDENRRPQRRRSGNRRTRNRSRGQNRPTNVKEN 245
+G+QA+ S +++G + E ++ + + ++ R+R + + E
Sbjct: 311 DGKQAENDSSN-----DDKTKKSEGDGDKEEKKEDSEKEAKKSSKKRNRKHSGDDSFDEG 365
Query: 246 TIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDKAEKGEE 287
++ E + + ES A+ +EE ++ K+K K+++ EK ++
Sbjct: 366 SVS-ESESESESGQAEEEKEEAEEALKEKEKPKEEEWEKPKD 406
>gi|58331218 arsenate resistance protein 2 isoform a [Homo sapiens]
Length = 876
Score = 33.9 bits (76), Expect = 0.25
Identities = 20/102 (19%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 186 NGRQAQPSSKTASDVVQPAAVQAQGQVNDENRRPQRRRSGNRRTRNRSRGQNRPTNVKEN 245
+G+QA+ S +++G + E ++ + + ++ R+R + + E
Sbjct: 311 DGKQAENDSSN-----DDKTKKSEGDGDKEEKKEDSEKEAKKSSKKRNRKHSGDDSFDEG 365
Query: 246 TIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDKAEKGEE 287
++ E + + ES A+ +EE ++ K+K K+++ EK ++
Sbjct: 366 SVS-ESESESESGQAEEEKEEAEEALKEKEKPKEEEWEKPKD 406
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 33.9 bits (76), Expect = 0.25
Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 4/157 (2%)
Query: 214 DENRRPQRRRSGNRRTRNRSRGQNRPTNVKENTIKFEGDFDFESANAQFNREELDKEFKK 273
D+ R +R RS +RR R+RSR + +E + + D S+ +RE +E ++
Sbjct: 249 DKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSR---SRERARRERER 305
Query: 274 KLNFKDDKAEKGEEKDLAVVTQSAEAPAEEDLLGPNCYYDKSKS-FFDNISSELKTSSRR 332
K + + E + P E GP+ +K + + S RR
Sbjct: 306 KEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERR 365
Query: 333 TTWAEERKLNTETFGVSGRFLRGRSSRGGFRGGRGNG 369
+R + E RGR G GG+ NG
Sbjct: 366 RDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNG 402
>gi|4507677 heat shock protein 90kDa beta, member 1 [Homo sapiens]
Length = 803
Score = 33.9 bits (76), Expect = 0.25
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 241 NVKENTIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDKAEKGEEKDLAVVTQSAEAP 300
NV + +KF+ ES + +RE ++KEF+ LN+ DKA K + + V + E+P
Sbjct: 590 NVAKEGVKFD-----ESEKTKESREAVEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESP 644
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23
[Homo sapiens]
Length = 1636
Score = 33.5 bits (75), Expect = 0.33
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 50 DRPTDRPAPPREEIYEYIIFRGSDIKDITVCEPPKAQHTLPQD----PAIVQSSLGSASA 105
DR + PPR + ++ R + + + +PP+ +LP D P + + LGSA+
Sbjct: 709 DRELKKKPPPRPTAPKPLLPRREESEAVEAGDPPEELRSLPPDMVAGPRLPDTFLGSATP 768
Query: 106 SPFQPHVPYSPFRGMAPYGP 125
H P SPF GP
Sbjct: 769 L----HFPPSPFPSSTGPGP 784
>gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens]
Length = 1989
Score = 33.5 bits (75), Expect = 0.33
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 282 AEKGEEKDLAVVTQSAEAPAEEDLLGPNCYYDKS--KSFFDNI---SSELKTSSRRTTWA 336
+ ++ L ++S A L GP+ Y K +S ++ SS L SS R ++
Sbjct: 75 SSSSSQQQLRNFSRSRHASERGHLRGPSSYRPKEPFRSHPPSVRMPSSSLSESSPRPSFW 134
Query: 337 EERKLNTETFGVSGRFLRGRSSRGGFRGGRGNGTTRRN-------PTSHRAGTG 383
E L + F RF RGR RGG R RG G R P AG+G
Sbjct: 135 ERSHLALDRF----RF-RGRPYRGGSRWSRGRGVGERGGKPGCRPPLGGGAGSG 183
>gi|238908501 sciellin isoform 3 [Homo sapiens]
Length = 646
Score = 33.1 bits (74), Expect = 0.43
Identities = 52/229 (22%), Positives = 85/229 (37%), Gaps = 24/229 (10%)
Query: 168 NLNAKKLLPG----KGTTGTQLNGRQAQPSSKTASDVVQP-------AAVQAQGQVNDEN 216
+L KL PG T+ T + P K V P + V + Q+ +N
Sbjct: 127 SLEVTKLQPGGSLNANTSNTIASTSATTPVKKKREPGVHPPIPPKPSSPVSSPNQLRQDN 186
Query: 217 RRPQRRRSGNRRTRNRSRGQNRPTNVKENTIKFEGDFDFESANAQFNREELDKEFK--KK 274
R+ + G NRS +N + +N +K S EELD K K
Sbjct: 187 RQIHPPKPGVYTETNRSAERNIRSQDLDNIVKVA-----TSLQRSDKGEELDNLIKMNKS 241
Query: 275 LNFKDDKAEKGEEKDLAVVTQSAEAPAEEDLLGPNCYYDKSKSFFDNISSELKTSSRRTT 334
LN ++ + + V + A + E L+ + DK ++ S +K ++RT
Sbjct: 242 LN-RNQGLDSLFRANPKVEEREKRAKSLESLIYMSTRTDKDGKGIQSLGSPIKV-NQRTD 299
Query: 335 WAEERKLNTETFGVSGRFLRGRSSRGGFRGGRGNGTTRRNPTSHRAGTG 383
E+ + N E+ + R ++ R + T NP H TG
Sbjct: 300 KNEKGRQNLESVAK----VNARMNKTSRRSEDLDNATEVNPKGHENTTG 344
>gi|4506321 protein tyrosine phosphatase, receptor type, N precursor
[Homo sapiens]
Length = 979
Score = 33.1 bits (74), Expect = 0.43
Identities = 36/125 (28%), Positives = 47/125 (37%), Gaps = 20/125 (16%)
Query: 49 EDRPTDRP--APPREEIYEYIIFRGSDIKDITVCEPPKAQHTLPQDPAIVQSSLGSASAS 106
E RP DR AP R ++ ++DI P AQH LPQ P + S+S S
Sbjct: 120 EPRPRDRSGLAPKRPGPAGELL-----LQDIPTGSAPAAQHRLPQPPVGKGGAGASSSLS 174
Query: 107 PFQPH----------VPYSPFRGMAPYGPLAASSLLSQQYAASLG--LGAGFPS-IPVGK 153
P Q +P P Y P L Q+ + G + G P + VG
Sbjct: 175 PLQAELLPPLLEHLLLPPQPPHPSLSYEPALLQPYLFHQFGSRDGSRVSEGSPGMVSVGP 234
Query: 154 SPMVE 158
P E
Sbjct: 235 LPKAE 239
>gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo
sapiens]
Length = 820
Score = 33.1 bits (74), Expect = 0.43
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 14/139 (10%)
Query: 216 NRRPQRRRSGNR-RTRNRSRGQNRPTNVKENTIKFEGDFDFESANAQFNREELDKEFKKK 274
+R RRR G+R R+R+RS+ R KE E D + + + + DK+ K+
Sbjct: 47 HRSRDRRRGGSRSRSRSRSKSAERERRHKERERDKERDRNKKDRDRDKDGHRRDKDRKRS 106
Query: 275 ----------LNFKDDKAEKGEEKDLAVVTQSAEAPAEEDLLGPNCYYDKSKS---FFDN 321
+ KD ++K EE + A+ + E+LL +++++ F
Sbjct: 107 SLSPGRGKDFKSRKDRDSKKDEEDEHGDKKPKAQPLSLEELLAKKKAEEEAEAKPKFLSK 166
Query: 322 ISSELKTSSRRTTWAEERK 340
E + RR EER+
Sbjct: 167 AEREAEALKRRQQEVEERQ 185
>gi|167234419 thyroid hormone receptor associated protein 3 [Homo
sapiens]
Length = 955
Score = 33.1 bits (74), Expect = 0.43
Identities = 57/264 (21%), Positives = 102/264 (38%), Gaps = 43/264 (16%)
Query: 122 PYGPLAASSLLSQQYAASLGLGAGFPS--------------IPVGKSPMVEQAVQTGSAD 167
P PL+++S Q ++L GAG+ S P KSP+ + TGS
Sbjct: 273 PSPPLSSTS----QMGSTLPSGAGYQSGTHQGQFDHGSGSLSPSKKSPVGKSPPSTGSTY 328
Query: 168 NLNAKKLLPGKGTTGTQLNGRQAQPSSKTASDVVQPAA------VQAQGQVNDENRRPQR 221
+ K+ G + Q ++ D Q ++ +G +D +
Sbjct: 329 GSSQKEESAASGGAAYTKRYLEEQ-KTENGKDKEQKQTNTDKEKIKEKGSFSDTGLGDGK 387
Query: 222 RRSGNRRTRNRSRGQNRPTNVKENTIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDK 281
+S + + S +P ++ +++ DFE A F++EE+D + K K + +
Sbjct: 388 MKSDSFAPKTDSE---KPFRGSQSPKRYKLRDDFEKKMADFHKEEMDDQDKDKAKGRKES 444
Query: 282 AEKGEEKDLAVVTQSAEAPAEEDLLGPNCYYDKSKSFFDNISSELKTSSRRTTWAEERKL 341
E K ++ V + + EE KS + + + +R T +L
Sbjct: 445 EFDDEPKFMSKVIGANKNQEEE----------KSGKWEGLVYAPPGKEKQRKT----EEL 490
Query: 342 NTETFGV-SGRFLRGRSSRGGFRG 364
E+F S + RG+ S GG RG
Sbjct: 491 EEESFPERSKKEDRGKRSEGGHRG 514
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 32.7 bits (73), Expect = 0.57
Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 37/161 (22%)
Query: 213 NDENRRPQRRRSGNR-RTRNRSRGQNRPTNVKENTIKFEGDFDFESANAQFNREELDKEF 271
+ ++ R RSG+R R+++RSR Q+R + KE + S + + +R
Sbjct: 213 SSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKS---------RSPSKEKSRSRSHSAG 263
Query: 272 KKKLNFKDDKAEKGEEKDLAVVTQSAEAPAEEDLLGPNCYYDKSKSFFDNISSELKTSSR 331
K + KD EK + D N KS+S S K+ S+
Sbjct: 264 KSRSKSKDQAEEKIQNND-------------------NVGKPKSRS-----PSRHKSKSK 299
Query: 332 RTTWAEERKLNTETFGVSGRFLRGRSSRGGFRGGRGNGTTR 372
+ ++ER++ E G RGRS R R ++
Sbjct: 300 SRSRSQERRVEEEK---RGSVSRGRSQEKSLRQSRSRSRSK 337
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.129 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,477,186
Number of Sequences: 37866
Number of extensions: 747807
Number of successful extensions: 3146
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 3036
Number of HSP's gapped (non-prelim): 195
length of query: 385
length of database: 18,247,518
effective HSP length: 104
effective length of query: 281
effective length of database: 14,309,454
effective search space: 4020956574
effective search space used: 4020956574
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.