Guide to the Human Genome
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Name: LOC100133264 Sequence: fasta or formatted (217aa) NCBI GI: 239755394
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {217aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         21           2
 C cysteine            0.9          2           1
 D aspartate           2.8          6           2
 E glutamate           6.5         14           4
 F phenylalanine       0.5          1           1
 G glycine            12.9         28           3
 H histidine           0.9          2           1
 I isoleucine          1.4          3           1
 K lysine              6.5         14           2
 L leucine             7.8         17           2
 M methionine          0.9          2           1
 N asparagine          2.3          5           1
 P proline             7.8         17           2
 Q glutamine           6.0         13           2
 R arginine           16.1         35           2
 S serine              6.9         15           2
 T threonine           2.8          6           1
 V valine              5.1         11           2
 W tryptophan          2.3          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133264          1.000   PREDICTED: hypothetical protein 
VEGFA                 0.038   vascular endothelial growth factor A isoform f precu...
VEGFA                 0.038   vascular endothelial growth factor A isoform e precu...
VEGFA                 0.038   vascular endothelial growth factor A isoform d precu...
VEGFA                 0.038   vascular endothelial growth factor A isoform c precu...
VEGFA                 0.038   vascular endothelial growth factor A isoform b precu...
VEGFA                 0.038   vascular endothelial growth factor A isoform a precu...
VEGFA                 0.038   vascular endothelial growth factor A isoform g precu...
LOC100290023          0.038   PREDICTED: hypothetical protein XP_002348147 
REXO1                 0.038   transcription elongation factor B polypeptide 3 bin...
LOC100292370          0.036   PREDICTED: hypothetical protein 
PRPF38B               0.031   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
LOC100133167          0.029   PREDICTED: hypothetical protein 
RBM25                 0.029   RNA binding motif protein 25 
PSIP1                 0.026   PC4 and SFRS1 interacting protein 1 isoform 2 [Homo...
PSIP1                 0.026   PC4 and SFRS1 interacting protein 1 isoform 1 [Homo...
PSIP1                 0.026   PC4 and SFRS1 interacting protein 1 isoform 2 
LOC100130128          0.026   PREDICTED: hypothetical protein 
LOC100290128          0.026   PREDICTED: hypothetical protein XP_002346712 
LUC7L2                0.026   LUC7-like 2 
LOC100133599          0.024   PREDICTED: hypothetical protein 
LOC100130128          0.024   PREDICTED: hypothetical protein 
LOC100130128          0.024   PREDICTED: hypothetical protein 
NCOR2                 0.024   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.024   nuclear receptor co-repressor 2 isoform 1 
RRP1                  0.024   ribosomal RNA processing 1 homolog 
HYOU1                 0.024   hypoxia up-regulated 1 precursor 
HYOU1                 0.024   hypoxia up-regulated 1 precursor 
MYST4                 0.024   MYST histone acetyltransferase (monocytic leukemia)...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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