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Search of human proteins with 148839305
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148839305 structural maintenance of chromosomes flexible
hinge domain containing 1 [Homo sapiens]
(2005 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148839305 structural maintenance of chromosomes flexible hing... 4040 0.0
gi|191252812 target of myb1-like 1 [Homo sapiens] 37 0.15
gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens] 36 0.43
gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens] 36 0.43
gi|23943854 pepsinogen 5, group I [Homo sapiens] 35 0.57
gi|119372302 pepsinogen 4, group I [Homo sapiens] 35 0.74
gi|119372298 pepsinogen 3, group I [Homo sapiens] 35 0.74
gi|32130516 serologically defined colon cancer antigen 1 [Homo s... 35 0.74
gi|124028525 phenylalanyl-tRNA synthetase, beta subunit [Homo sa... 34 1.3
gi|40538794 coiled-coil domain containing 21 [Homo sapiens] 34 1.3
gi|11034845 Regulation of nuclear pre-mRNA domain containing 1B ... 34 1.6
gi|239747798 PREDICTED: hypothetical protein XP_002348316 [Homo ... 33 2.2
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens] 33 2.8
gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens] 33 2.8
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens] 33 2.8
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens] 33 2.8
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens] 33 2.8
gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens] 33 2.8
gi|36031016 CTCL tumor antigen L14-2 [Homo sapiens] 33 3.7
gi|30795204 histone deacetylase 9 isoform 5 [Homo sapiens] 33 3.7
gi|13124883 HsKin17 protein [Homo sapiens] 33 3.7
gi|157388975 coiled-coil domain containing 99 [Homo sapiens] 33 3.7
gi|126362967 Nck-associated protein 5 isoform 1 [Homo sapiens] 32 4.8
gi|187937176 NACHT, leucine rich repeat and PYD containing 7 iso... 32 4.8
gi|75709196 NACHT, leucine rich repeat and PYD containing 7 isof... 32 4.8
gi|46049100 NACHT, leucine rich repeat and PYD containing 7 isof... 32 4.8
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 32 4.8
gi|28460688 taxilin [Homo sapiens] 32 4.8
gi|71061468 centromere protein E [Homo sapiens] 32 4.8
gi|133922609 hypothetical protein LOC23383 [Homo sapiens] 32 4.8
>gi|148839305 structural maintenance of chromosomes flexible hinge
domain containing 1 [Homo sapiens]
Length = 2005
Score = 4040 bits (10477), Expect = 0.0
Identities = 2005/2005 (100%), Positives = 2005/2005 (100%)
Query: 1 MAAADGGGPGGASVGTEEDGGGVGHRTVYLFDRREKESELGDRPLQVGERSDYAGFRACV 60
MAAADGGGPGGASVGTEEDGGGVGHRTVYLFDRREKESELGDRPLQVGERSDYAGFRACV
Sbjct: 1 MAAADGGGPGGASVGTEEDGGGVGHRTVYLFDRREKESELGDRPLQVGERSDYAGFRACV 60
Query: 61 CQTLGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPH 120
CQTLGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPH
Sbjct: 61 CQTLGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPH 120
Query: 121 YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNIGVRRIQIKLLFDETQGKPAV 180
YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNIGVRRIQIKLLFDETQGKPAV
Sbjct: 121 YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNIGVRRIQIKLLFDETQGKPAV 180
Query: 181 AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK 240
AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
Sbjct: 181 AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK 240
Query: 241 QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITN 300
QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITN
Sbjct: 241 QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITN 300
Query: 301 DDERFLHHLIIEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGN 360
DDERFLHHLIIEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGN
Sbjct: 301 DDERFLHHLIIEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGN 360
Query: 361 EIRTSKEVEPFNNIDIEISMFEKGKVPKIVNLREIQDDMQTLYVNTAADSFEFKAHVEGD 420
EIRTSKEVEPFNNIDIEISMFEKGKVPKIVNLREIQDDMQTLYVNTAADSFEFKAHVEGD
Sbjct: 361 EIRTSKEVEPFNNIDIEISMFEKGKVPKIVNLREIQDDMQTLYVNTAADSFEFKAHVEGD 420
Query: 421 GVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDEDDCFILEKAARGKRPIFECFWNGRL 480
GVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDEDDCFILEKAARGKRPIFECFWNGRL
Sbjct: 421 GVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDEDDCFILEKAARGKRPIFECFWNGRL 480
Query: 481 IPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT 540
IPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
Sbjct: 481 IPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT 540
Query: 541 LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGVITRPDLPSKKQGPWATYA 600
LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGVITRPDLPSKKQGPWATYA
Sbjct: 541 LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGVITRPDLPSKKQGPWATYA 600
Query: 601 AIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE 660
AIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE
Sbjct: 601 AIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE 660
Query: 661 VRTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEVRPAGTPIGALRI 720
VRTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEVRPAGTPIGALRI
Sbjct: 661 VRTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEVRPAGTPIGALRI 720
Query: 721 EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKME 780
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKME
Sbjct: 721 EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKME 780
Query: 781 NIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDLPFRVGVP 840
NIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDLPFRVGVP
Sbjct: 781 NIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDLPFRVGVP 840
Query: 841 FNIPLEFQDEFGHTSQLVTDIQPVLEASGLSLHYEEITKGPNCVIRGVTAKGPVNSCQGK 900
FNIPLEFQDEFGHTSQLVTDIQPVLEASGLSLHYEEITKGPNCVIRGVTAKGPVNSCQGK
Sbjct: 841 FNIPLEFQDEFGHTSQLVTDIQPVLEASGLSLHYEEITKGPNCVIRGVTAKGPVNSCQGK 900
Query: 901 NYNLKVTLPGLKEDSQILKIRLLPGHPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNI 960
NYNLKVTLPGLKEDSQILKIRLLPGHPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNI
Sbjct: 901 NYNLKVTLPGLKEDSQILKIRLLPGHPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNI 960
Query: 961 TAQPKLIVHCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKARIEIPSCKD 1020
TAQPKLIVHCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKARIEIPSCKD
Sbjct: 961 TAQPKLIVHCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKARIEIPSCKD 1020
Query: 1021 VAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGERE 1080
VAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGERE
Sbjct: 1021 VAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGERE 1080
Query: 1081 INITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFT 1140
INITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFT
Sbjct: 1081 INITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFT 1140
Query: 1141 VRPLPDEPKHLKCEMKGGKTVQMGQELQGEVVIIITDQYGNQIQAFSPSSLSSLSIAGVG 1200
VRPLPDEPKHLKCEMKGGKTVQMGQELQGEVVIIITDQYGNQIQAFSPSSLSSLSIAGVG
Sbjct: 1141 VRPLPDEPKHLKCEMKGGKTVQMGQELQGEVVIIITDQYGNQIQAFSPSSLSSLSIAGVG 1200
Query: 1201 LDSSNLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLI 1260
LDSSNLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLI
Sbjct: 1201 LDSSNLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLI 1260
Query: 1261 DWPELKESIPVINGRDLQNPIIVQLCDQWDNPAPVQHVKISLTKASNLKLMPSNQQHKTD 1320
DWPELKESIPVINGRDLQNPIIVQLCDQWDNPAPVQHVKISLTKASNLKLMPSNQQHKTD
Sbjct: 1261 DWPELKESIPVINGRDLQNPIIVQLCDQWDNPAPVQHVKISLTKASNLKLMPSNQQHKTD 1320
Query: 1321 EKGRANLGVFSVFAPRGEHTLQVKAIYNKSIIEGPIIKLMILPDPEKPVRLNVKYDKDAS 1380
EKGRANLGVFSVFAPRGEHTLQVKAIYNKSIIEGPIIKLMILPDPEKPVRLNVKYDKDAS
Sbjct: 1321 EKGRANLGVFSVFAPRGEHTLQVKAIYNKSIIEGPIIKLMILPDPEKPVRLNVKYDKDAS 1380
Query: 1381 FLAGGLFTDFMISVISEDDSIIKNINPARISMKMWKLSTSGNRPPANAETFSCNKIKDND 1440
FLAGGLFTDFMISVISEDDSIIKNINPARISMKMWKLSTSGNRPPANAETFSCNKIKDND
Sbjct: 1381 FLAGGLFTDFMISVISEDDSIIKNINPARISMKMWKLSTSGNRPPANAETFSCNKIKDND 1440
Query: 1441 KEDGCFYFRDKVIPNKVGTYCIQFGFMMDKTNILNSEQVIVEVLPNQPVKLVPKIKPPTP 1500
KEDGCFYFRDKVIPNKVGTYCIQFGFMMDKTNILNSEQVIVEVLPNQPVKLVPKIKPPTP
Sbjct: 1441 KEDGCFYFRDKVIPNKVGTYCIQFGFMMDKTNILNSEQVIVEVLPNQPVKLVPKIKPPTP 1500
Query: 1501 AVSNVRSVASRTLVRDLHLSITDDYDNHTGIDLVGTIIATIKGSNEEDTDTPLFIGKVRT 1560
AVSNVRSVASRTLVRDLHLSITDDYDNHTGIDLVGTIIATIKGSNEEDTDTPLFIGKVRT
Sbjct: 1501 AVSNVRSVASRTLVRDLHLSITDDYDNHTGIDLVGTIIATIKGSNEEDTDTPLFIGKVRT 1560
Query: 1561 LEFPFVNGSAEIMSLVLAESSPGRDSTEYFIVFEPRLPLLSRTLEPYILPFMFYNDVKKQ 1620
LEFPFVNGSAEIMSLVLAESSPGRDSTEYFIVFEPRLPLLSRTLEPYILPFMFYNDVKKQ
Sbjct: 1561 LEFPFVNGSAEIMSLVLAESSPGRDSTEYFIVFEPRLPLLSRTLEPYILPFMFYNDVKKQ 1620
Query: 1621 QQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNIDIP 1680
QQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNIDIP
Sbjct: 1621 QQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNIDIP 1680
Query: 1681 TTQQVPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMV 1740
TTQQVPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMV
Sbjct: 1681 TTQQVPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMV 1740
Query: 1741 ISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRSLPHFRNGKLY 1800
ISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRSLPHFRNGKLY
Sbjct: 1741 ISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRSLPHFRNGKLY 1800
Query: 1801 FKPIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLL 1860
FKPIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLL
Sbjct: 1801 FKPIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLL 1860
Query: 1861 TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRSAVCKLD 1920
TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRSAVCKLD
Sbjct: 1861 TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRSAVCKLD 1920
Query: 1921 SVNKDLNSQLEYLRTPDMRKKKQELDEHEKNLKLIEEKLGMTPIRKCNDSLRHSPKVETT 1980
SVNKDLNSQLEYLRTPDMRKKKQELDEHEKNLKLIEEKLGMTPIRKCNDSLRHSPKVETT
Sbjct: 1921 SVNKDLNSQLEYLRTPDMRKKKQELDEHEKNLKLIEEKLGMTPIRKCNDSLRHSPKVETT 1980
Query: 1981 DCPVPPKRMRREATRQNRIITKTDV 2005
DCPVPPKRMRREATRQNRIITKTDV
Sbjct: 1981 DCPVPPKRMRREATRQNRIITKTDV 2005
>gi|191252812 target of myb1-like 1 [Homo sapiens]
Length = 476
Score = 37.4 bits (85), Expect = 0.15
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
Query: 1529 TGIDLVGTIIATIKGSNEEDTDTPLFIGKVRTLEFPFVNGSAEIMSLVLAESSPGRDSTE 1588
T + + + I N T P IGK+ + E V + +MS +L E++PG ++ E
Sbjct: 176 TSVPTAPALSSVIAPKNSTVTLVPEQIGKLHS-ELDMVKMNVRVMSAILMENTPGSENHE 234
Query: 1589 YFIVFEPRLPLLSRTLEPYILPFMFYNDVKKQQQMAALTKEKDQLSQSIVMYKSLFEASQ 1648
+ + +L R ++ I+ + V+ + L + + L+ +I+ Y+ Q
Sbjct: 235 DIELLQ-KLYKTGREMQERIMDLLVV--VENEDVTVELIQVNEDLNNAILGYERFTRNQQ 291
Query: 1649 QLLNEMKCQVE 1659
++L + K Q E
Sbjct: 292 RILEQNKNQKE 302
>gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens]
Length = 1220
Score = 35.8 bits (81), Expect = 0.43
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 1618 KKQQQMAALTKEK----DQLSQ---------SIVMYKSLFEASQQLLNEMKCQVEEARLK 1664
+ QQ + L EK DQL Q S+V K EA + ++ Q++E +
Sbjct: 533 ESQQMLGRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKE 592
Query: 1665 EAQLRNELKIHNIDIPTTQQVPHIEALLKRKLSEQEELKKK 1705
E+ I N + +++ + + L K+K E E LK+K
Sbjct: 593 TRSKLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQK 633
>gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens]
Length = 1721
Score = 35.8 bits (81), Expect = 0.43
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 1618 KKQQQMAALTKEK----DQLSQ---------SIVMYKSLFEASQQLLNEMKCQVEEARLK 1664
+ QQ + L EK DQL Q S+V K EA + ++ Q++E +
Sbjct: 533 ESQQMLGRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKE 592
Query: 1665 EAQLRNELKIHNIDIPTTQQVPHIEALLKRKLSEQEELKKK 1705
E+ I N + +++ + + L K+K E E LK+K
Sbjct: 593 TRSKLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQK 633
>gi|23943854 pepsinogen 5, group I [Homo sapiens]
Length = 388
Score = 35.4 bits (80), Expect = 0.57
Identities = 20/107 (18%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 988 SGTSILTGSAIQVQNIKKDQTLKARIE---IPSCKDVAPVEKTIKLL--------PSSHV 1036
+GTS+LTG + NI+ D + + SC ++ + + + PS+++
Sbjct: 278 TGTSLLTGPTSPIANIQSDIGASENSDGDMVVSCSAISSLPDIVFTINGVQYPVPPSAYI 337
Query: 1037 ARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREINI 1083
+ + + G + + + + WI GD+ F ++D ++ +
Sbjct: 338 LQSEGSCISGFQGMNVPTESGELWILGDVFIRQYFTVFDRANNQVGL 384
>gi|119372302 pepsinogen 4, group I [Homo sapiens]
Length = 388
Score = 35.0 bits (79), Expect = 0.74
Identities = 20/107 (18%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 988 SGTSILTGSAIQVQNIKKDQTLKARIE---IPSCKDVAPVEKTIKLL--------PSSHV 1036
+GTS+LTG + NI+ D + + SC ++ + + + PS+++
Sbjct: 278 TGTSLLTGPTSPIANIQSDIGASENSDGDMVVSCSAISSLPDIVFTINGVQYPVPPSAYI 337
Query: 1037 ARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREINI 1083
+ + + G + + + + WI GD+ F ++D ++ +
Sbjct: 338 LQSEGSCISGFQGMNLPTESGELWILGDVFIRQYFTVFDRANNQVGL 384
>gi|119372298 pepsinogen 3, group I [Homo sapiens]
Length = 388
Score = 35.0 bits (79), Expect = 0.74
Identities = 20/107 (18%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 988 SGTSILTGSAIQVQNIKKDQTLKARIE---IPSCKDVAPVEKTIKLL--------PSSHV 1036
+GTS+LTG + NI+ D + + SC ++ + + + PS+++
Sbjct: 278 TGTSLLTGPTSPIANIQSDIGASENSDGDMVVSCSAISSLPDIVFTINGVQYPVPPSAYI 337
Query: 1037 ARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREINI 1083
+ + + G + + + + WI GD+ F ++D ++ +
Sbjct: 338 LQSEGSCISGFQGMNLPTESGELWILGDVFIRQYFTVFDRANNQVGL 384
>gi|32130516 serologically defined colon cancer antigen 1 [Homo
sapiens]
Length = 1076
Score = 35.0 bits (79), Expect = 0.74
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 5/62 (8%)
Query: 1901 ILGEQIDL--LQQYRSAVCKLDSVNKDLNSQLEYL-RTPDMRKKKQELDEHEKNLKLIEE 1957
I G++IDL LQQ + A+ KLD+V KD ++LE L + ++ K K EL E NL++++
Sbjct: 303 IEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGEL--IEMNLQIVDR 360
Query: 1958 KL 1959
+
Sbjct: 361 AI 362
>gi|124028525 phenylalanyl-tRNA synthetase, beta subunit [Homo
sapiens]
Length = 589
Score = 34.3 bits (77), Expect = 1.3
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 956 ESDNITAQPKLIV----HCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKA 1011
E D IT++ ++I + K +GA ++ +Y +D ++ +L + ++ Q K
Sbjct: 34 ELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLEGL----VRGLQVFKE 89
Query: 1012 RIEIPSCKDVAPVEKTIKLLPSSHVARLQIFSV 1044
RI+ P K V P K KL+ + A+++ F+V
Sbjct: 90 RIKAPVYKRVMPDGKIQKLIITEETAKIRPFAV 122
>gi|40538794 coiled-coil domain containing 21 [Homo sapiens]
Length = 762
Score = 34.3 bits (77), Expect = 1.3
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 1603 TLEPYILPFMFYNDVKKQ-QQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEA 1661
TLE Y+ D +KQ QQ+ + +L + + +SL E +Q + E + Q+E
Sbjct: 478 TLERYLADLPTLEDHQKQSQQLKDSELKSTELQEKVTELESLLEETQAICREKEIQLESL 537
Query: 1662 RLKEAQ 1667
R +EA+
Sbjct: 538 RQREAE 543
>gi|11034845 Regulation of nuclear pre-mRNA domain containing 1B [Homo
sapiens]
Length = 326
Score = 33.9 bits (76), Expect = 1.6
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 1600 LSRTLEPYILPFMFYNDVKKQQQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVE 1659
LS+T++ L YN ++AA +++ QL++ +V Y + + +L+E + ++E
Sbjct: 226 LSKTVDEACLLLAEYNG-----RLAAELEDRRQLARMLVEYT---QNQKDVLSEKEKKLE 277
Query: 1660 EARLKEA---QLRNELKIHNIDIPTTQQVPHI 1688
E + K A Q+R ELK H +P +P++
Sbjct: 278 EYKQKLARVTQVRKELKSHIQSLPDLSLLPNV 309
>gi|239747798 PREDICTED: hypothetical protein XP_002348316 [Homo
sapiens]
Length = 399
Score = 33.5 bits (75), Expect = 2.2
Identities = 60/282 (21%), Positives = 121/282 (42%), Gaps = 32/282 (11%)
Query: 66 ISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDTLV 125
+S +++ + T+ +E + N +KDG + S Q L AT + D + + T +
Sbjct: 144 VSSQKQPALKATTDEEDSVSNIATEIKDGEKSGTVSSQKQPALKATTDEEDSVLNIATEI 203
Query: 126 KSGMYEYYASEGQNPLPFALAELIDN-SLSATSRNIGVRRIQIKLLFDETQGKPAVAVID 184
K G S + P A + D+ S+ AT G + + ++ KPA+
Sbjct: 204 KDGEKSETVSSQKQPALKATTDEEDSVSIIATEIKDGEKSGTV-----SSRKKPALKA-- 256
Query: 185 NGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVG-GKQAV 243
TS + ++++ +++ + G+ + +P + + + + S + GK+
Sbjct: 257 -----TSDEKDSFS--NITREKKDGEISRTVTS-EKPAGLKATSDEEDSVLNIARGKED- 307
Query: 244 FFVGQSARMIS---KPADSQDVHELVLSKEDFEK-KEKNKEAIYSGYIRNRKPSDSVHIT 299
G+ R +S KPA E K+ F + K+ S + ++KP ++ T
Sbjct: 308 ---GEKTRRVSSRKKPALKATSDE----KDSFSNITREKKDGETSRTVSSQKP-PALKAT 359
Query: 300 NDDERFLHHLIIEEKEKDSFTAVVITGVQPEHIQYLKNYFHL 341
+D+E + L I +EKD + ++ QP ++ +K F L
Sbjct: 360 SDEEDSV--LSIAREEKDGEKSRTVSSEQPPGLKVMKLSFML 399
>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
Length = 2003
Score = 33.1 bits (74), Expect = 2.8
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 1620 QQQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNIDI 1679
+ ++A ++ +Q ++ ++ L +++ L E+ QVEE R QLR++L+ N+ +
Sbjct: 1845 ESKLAQAEEQLEQETRERILSGKLVRRAEKRLKEVVLQVEEERRVADQLRDQLEKGNLRV 1904
Query: 1680 PTTQQVPHIEALLKRKLSEQEE 1701
LKR+L E EE
Sbjct: 1905 KQ----------LKRQLEEAEE 1916
>gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]
Length = 1995
Score = 33.1 bits (74), Expect = 2.8
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 1620 QQQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNIDI 1679
+ ++A ++ +Q ++ ++ L +++ L E+ QVEE R QLR++L+ N+ +
Sbjct: 1837 ESKLAQAEEQLEQETRERILSGKLVRRAEKRLKEVVLQVEEERRVADQLRDQLEKGNLRV 1896
Query: 1680 PTTQQVPHIEALLKRKLSEQEE 1701
LKR+L E EE
Sbjct: 1897 KQ----------LKRQLEEAEE 1908
>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
Length = 2036
Score = 33.1 bits (74), Expect = 2.8
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 1620 QQQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNIDI 1679
+ ++A ++ +Q ++ ++ L +++ L E+ QVEE R QLR++L+ N+ +
Sbjct: 1878 ESKLAQAEEQLEQETRERILSGKLVRRAEKRLKEVVLQVEEERRVADQLRDQLEKGNLRV 1937
Query: 1680 PTTQQVPHIEALLKRKLSEQEE 1701
LKR+L E EE
Sbjct: 1938 KQ----------LKRQLEEAEE 1949
>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 33.1 bits (74), Expect = 2.8
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 1618 KKQQQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNI 1677
+KQQ++ A+T E ++L + YK EA + + + Q+E + A +N+ ++
Sbjct: 814 EKQQEVEAITLELEELKREHTSYKQQLEAVNEAIKSYESQIEVMAAEVA--KNKESVNKA 871
Query: 1678 DIPTTQQVPHIEA---LLKRKLSEQEELKKK 1705
T+Q I A ++K K +E + K++
Sbjct: 872 QEEVTKQKEVITAQDTVIKAKYAEVAKHKEQ 902
>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 33.1 bits (74), Expect = 2.8
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 1618 KKQQQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNI 1677
+KQQ++ A+T E ++L + YK EA + + + Q+E + A +N+ ++
Sbjct: 814 EKQQEVEAITLELEELKREHTSYKQQLEAVNEAIKSYESQIEVMAAEVA--KNKESVNKA 871
Query: 1678 DIPTTQQVPHIEA---LLKRKLSEQEELKKK 1705
T+Q I A ++K K +E + K++
Sbjct: 872 QEEVTKQKEVITAQDTVIKAKYAEVAKHKEQ 902
>gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 33.1 bits (74), Expect = 2.8
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 1618 KKQQQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNI 1677
+KQQ++ A+T E ++L + YK EA + + + Q+E + A +N+ ++
Sbjct: 814 EKQQEVEAITLELEELKREHTSYKQQLEAVNEAIKSYESQIEVMAAEVA--KNKESVNKA 871
Query: 1678 DIPTTQQVPHIEA---LLKRKLSEQEELKKK 1705
T+Q I A ++K K +E + K++
Sbjct: 872 QEEVTKQKEVITAQDTVIKAKYAEVAKHKEQ 902
>gi|36031016 CTCL tumor antigen L14-2 [Homo sapiens]
Length = 898
Score = 32.7 bits (73), Expect = 3.7
Identities = 40/220 (18%), Positives = 88/220 (40%), Gaps = 14/220 (6%)
Query: 1518 HLSITDDYDNHTGIDLVGTIIATIKGSNEE--------DTD-TPLFIGKVRTL---EFPF 1565
H+S T++ + LV +T S E DTD T FI K++++ E
Sbjct: 104 HISKTNETEQKVTQILVELRSSTFPESANEKTYSESPYDTDCTKKFISKIKSVSASEDLL 163
Query: 1566 VNGSAEIMSLVLAESSP--GRDSTEYFIVFEPRLPLLSRTLEPYILPFMFYNDVKKQQQM 1623
+E++S AE G + E+ +V + + +I+ + + K Q+
Sbjct: 164 EEIESELLSTEFAEHRVPNGMNKGEHALVLFEKCVQDKYLQQEHIIKKLIKENKKHQELF 223
Query: 1624 AALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNIDIPTTQ 1683
+ EKD L + + + + +++ ++EE + R++L ++
Sbjct: 224 VDICSEKDNLREELKKRTETEKQHMNTIKQLESRIEELNKEVKASRDQLIAQDVTAKNAV 283
Query: 1684 QVPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVL 1723
Q H E + + + ++ + + + + Y +G + L
Sbjct: 284 QQLHKEMAQRMEQANKKCEEARQEKEAMVMKYVRGEKESL 323
>gi|30795204 histone deacetylase 9 isoform 5 [Homo sapiens]
Length = 1069
Score = 32.7 bits (73), Expect = 3.7
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 1604 LEPYILPFMFYNDVKKQQQMAALTKEKDQLSQSIVMYKSLFEASQQLL-NEMKCQVEE-A 1661
LEP I P D++ + + QL Q +++ + + +QLL E + Q E
Sbjct: 18 LEP-ISPLDLRTDLRMMMPVVDPVVREKQLQQELLLIQQQQQIQKQLLIAEFQKQHENLT 76
Query: 1662 RLKEAQLRNELKIHNIDIPTTQQVPHIEALLKRKLSEQEELKKKPRRSCTLP 1713
R +AQL+ +K+ + QQ +E K + QE+ ++ RR LP
Sbjct: 77 RQHQAQLQEHIKLQQELLAIKQQQELLEKEQKLEQQRQEQEVERHRREQQLP 128
>gi|13124883 HsKin17 protein [Homo sapiens]
Length = 393
Score = 32.7 bits (73), Expect = 3.7
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 11/56 (19%)
Query: 1913 RSAVCKLDSVNKDLNSQLEYL-RTPDM--------RKKKQELDEHEKNLKLIEEKL 1959
R +CK+D K ++Y+ R P+ +KKKQ+LD+ EK K IEE++
Sbjct: 124 REGLCKVDETPKGW--YIQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQV 177
>gi|157388975 coiled-coil domain containing 99 [Homo sapiens]
Length = 605
Score = 32.7 bits (73), Expect = 3.7
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 1619 KQQQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNID 1678
KQQQ L K ++QLS+S + + + ++K +++EARL E QL++
Sbjct: 84 KQQQKMHLEKLEEQLSRS---HGQEVNELKTKIEKLKVELDEARLSEKQLKH-------- 132
Query: 1679 IPTTQQVPHIEALLKRKLSEQEELKKKPRRS 1709
QV H + LL K E + ++ + S
Sbjct: 133 -----QVDHQKELLSCKSEELRVMSERVQES 158
>gi|126362967 Nck-associated protein 5 isoform 1 [Homo sapiens]
Length = 1909
Score = 32.3 bits (72), Expect = 4.8
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 929 RLKVKPDSEILVIENGTAFPFQVEVLDESDNITAQPKLIVHCKFSGAPNLPVYVVDCSSS 988
+LK++P + + T F E+L+ D A SG+ N V SS
Sbjct: 1597 QLKIEPRNRHSPVACSTKDTFMTELLNRVDKKAAPQTE------SGSSNASCRNVLKGSS 1650
Query: 989 GTSILTGSAIQVQ-NIKKDQTLKARIEIP 1016
S L GS+I Q N KK+ +KA +E+P
Sbjct: 1651 QGSCLIGSSISTQGNHKKNMKIKADMEVP 1679
>gi|187937176 NACHT, leucine rich repeat and PYD containing 7 isoform
3 [Homo sapiens]
Length = 1037
Score = 32.3 bits (72), Expect = 4.8
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 15/69 (21%)
Query: 1255 AKLLLIDWPELKESIP-----------VINGRD-LQNP---IIVQLCDQWDNPAPVQHVK 1299
A+L+ DWPEL++ IP V++G D L+ P +I +C W+ PV +
Sbjct: 224 AELISKDWPELQDDIPSILAQAQRILFVVDGLDELKVPPGALIQDICGDWEKKKPVPVLL 283
Query: 1300 ISLTKASNL 1308
SL K L
Sbjct: 284 GSLLKRKML 292
>gi|75709196 NACHT, leucine rich repeat and PYD containing 7 isoform 2
[Homo sapiens]
Length = 980
Score = 32.3 bits (72), Expect = 4.8
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 15/69 (21%)
Query: 1255 AKLLLIDWPELKESIP-----------VINGRD-LQNP---IIVQLCDQWDNPAPVQHVK 1299
A+L+ DWPEL++ IP V++G D L+ P +I +C W+ PV +
Sbjct: 224 AELISKDWPELQDDIPSILAQAQRILFVVDGLDELKVPPGALIQDICGDWEKKKPVPVLL 283
Query: 1300 ISLTKASNL 1308
SL K L
Sbjct: 284 GSLLKRKML 292
>gi|46049100 NACHT, leucine rich repeat and PYD containing 7 isoform 1
[Homo sapiens]
Length = 1009
Score = 32.3 bits (72), Expect = 4.8
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 15/69 (21%)
Query: 1255 AKLLLIDWPELKESIP-----------VINGRD-LQNP---IIVQLCDQWDNPAPVQHVK 1299
A+L+ DWPEL++ IP V++G D L+ P +I +C W+ PV +
Sbjct: 224 AELISKDWPELQDDIPSILAQAQRILFVVDGLDELKVPPGALIQDICGDWEKKKPVPVLL 283
Query: 1300 ISLTKASNL 1308
SL K L
Sbjct: 284 GSLLKRKML 292
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 32.3 bits (72), Expect = 4.8
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 911 LKEDSQILKIRLLPGHPRRLKVKPDSEILVIENG--TAFPFQVEVLDESDNITA--QPKL 966
LKE+ + K+ P + KPDS +L I +G P + + +S+ ++A + K
Sbjct: 242 LKEEKIVPKMAFKEPKPMSKEPKPDSNLLTITSGQDKKAPSKRPPISDSEELSAKKRKKS 301
Query: 967 IVHCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIK--KDQTLKARIEIPSCKDV 1021
F + P ++ CS+ I S +++ +K + + K + +P D+
Sbjct: 302 SSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDDI 358
>gi|28460688 taxilin [Homo sapiens]
Length = 546
Score = 32.3 bits (72), Expect = 4.8
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 1620 QQQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNIDI 1679
+Q+M +TK+ +L + MY+S +E+S + L EM EE +++ +L L++
Sbjct: 412 KQEMEKMTKKIKKLEKETTMYRSRWESSNKALLEM---AEEKTVRDKELEG-LQV----- 462
Query: 1680 PTTQQVPHIEALLKRKLSEQEELKKK 1705
++ +E L + +E+ +L K+
Sbjct: 463 ----KIQRLEKLCRALQTERNDLNKR 484
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 32.3 bits (72), Expect = 4.8
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 32/172 (18%)
Query: 1576 VLAESSPGRDSTEYFIVFEPRLPLLSRTLEPYILPFMFYNDVKKQQQMAALTKEKDQLSQ 1635
+L E S +DST + RL L + E Q+++ +LTKE+D L
Sbjct: 1310 LLTEQSTTKDSTTLARIEMERLRLNEKFQE-------------SQEEIKSLTKERDNL-- 1354
Query: 1636 SIVMYKSLFEASQQLLNEMKCQVEE--ARLKEAQLRNE--LKIHNIDIPTTQQVPHIE-- 1689
K++ EA + +++K + E A+++E+Q + E L + D TT+ V +E
Sbjct: 1355 -----KTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQF 1409
Query: 1690 -----ALLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDR 1736
ALL+ ++ E L K+ + S D L ++ + Q E D+
Sbjct: 1410 KPKDSALLRIEI-EMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQ 1460
>gi|133922609 hypothetical protein LOC23383 [Homo sapiens]
Length = 613
Score = 32.3 bits (72), Expect = 4.8
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 1612 MFYNDVKKQQQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNE 1671
+ Y+ K +Q + ++ +SQ I ++ + + LL+E+ CQ + LR
Sbjct: 74 VLYHHTKNSEQARSHLEKAWLISQQIPQFEDVKFEAASLLSELYCQENSVDAAKPLLRKA 133
Query: 1672 LKIHNIDIPTTQQVPHIEALLKRKLSEQEELKKKPRRSCTL 1712
++I +QQ P+ L +L++ L+K +C L
Sbjct: 134 IQI-------SQQTPYWHCRLLFQLAQLHTLEKDLVSACDL 167
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,113,335
Number of Sequences: 37866
Number of extensions: 3690699
Number of successful extensions: 10374
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 10299
Number of HSP's gapped (non-prelim): 109
length of query: 2005
length of database: 18,247,518
effective HSP length: 117
effective length of query: 1888
effective length of database: 13,817,196
effective search space: 26086866048
effective search space used: 26086866048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.