Guide to the Human Genome
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Name: TOM1L1 Sequence: fasta or formatted (476aa) NCBI GI: 191252812
Description:

target of myb1-like 1

Referenced in:

Lysosomes and Related Organelles

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         30           3
 C cysteine            0.6          3           1
 D aspartate           4.8         23           1
 E glutamate           7.6         36           2
 F phenylalanine       2.9         14           1
 G glycine             3.8         18           2
 H histidine           2.5         12           1
 I isoleucine          5.0         24           2
 K lysine              5.5         26           2
 L leucine            10.3         49           2
 M methionine          2.9         14           1
 N asparagine          7.8         37           2
 P proline             7.4         35           2
 Q glutamine           6.3         30           2
 R arginine            2.9         14           1
 S serine              8.0         38           2
 T threonine           6.3         30           2
 V valine              6.5         31           3
 W tryptophan          0.4          2           1
 Y tyrosine            2.1         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   target of myb1-like 1 
TOM1L2                0.246   target of myb1-like 2 isoform 3 
TOM1                  0.226   target of myb1 isoform 2 
TOM1                  0.226   target of myb1 isoform 1 
TOM1                  0.200   target of myb1 isoform 3 
TOM1                  0.199   target of myb1 isoform 4 
TOM1L2                0.176   target of myb1-like 2 isoform 1 
GGA2                  0.076   ADP-ribosylation factor binding protein 2 
GGA3                  0.075   ADP-ribosylation factor binding protein 3 isoform lo...
GGA1                  0.063   golgi associated, gamma adaptin ear containing, ARF b...
STAM2                 0.061   signal transducing adaptor molecule 2 
GGA1                  0.060   golgi associated, gamma adaptin ear containing, ARF ...
STAM                  0.055   signal transducing adaptor molecule 1 
HGS                   0.039   hepatocyte growth factor-regulated tyrosine kinase su...
GGA3                  0.038   ADP-ribosylation factor binding protein 3 isoform sh...
GOLGA1                0.015   golgin 97 
CABYR                 0.013   calcium-binding tyrosine phosphorylation-regulated p...
SMCHD1                0.013   structural maintenance of chromosomes flexible hing...
CABYR                 0.013   calcium-binding tyrosine phosphorylation-regulated p...
AKAP9                 0.011   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.011   A-kinase anchor protein 9 isoform 3 
SETD2                 0.009   SET domain containing 2 
RBM20                 0.009   RNA binding motif protein 20 
CAMK1G                0.009   calcium/calmodulin-dependent protein kinase IG [Homo...
AIDA                  0.009   axin interactor, dorsalization associated 
C6orf204              0.009   chromosome 6 open reading frame 204 isoform a [Homo...
C6orf204              0.009   chromosome 6 open reading frame 204 isoform b [Homo...
AUTS2                 0.009   autism susceptibility candidate 2 isoform 2 
AUTS2                 0.009   autism susceptibility candidate 2 isoform 1 
CEP290                0.008   centrosomal protein 290kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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