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Search of human proteins with 148833488
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148833488 interferon regulatory factor 5 isoform c [Homo
sapiens]
(488 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148833515 interferon regulatory factor 5 isoform c [Homo sapi... 1027 0.0
gi|148833492 interferon regulatory factor 5 isoform c [Homo sapi... 1027 0.0
gi|148833488 interferon regulatory factor 5 isoform c [Homo sapi... 1027 0.0
gi|148833496 interferon regulatory factor 5 isoform b [Homo sapi... 1019 0.0
gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens] 1019 0.0
gi|4504727 interferon regulatory factor 5 isoform a [Homo sapiens] 1016 0.0
gi|148833494 interferon regulatory factor 5 isoform d [Homo sapi... 1008 0.0
gi|5453700 interferon regulatory factor 6 [Homo sapiens] 454 e-128
gi|167555104 interferon regulatory factor 4 [Homo sapiens] 209 6e-54
gi|4504567 interferon regulatory factor 8 [Homo sapiens] 200 3e-51
gi|4504725 interferon regulatory factor 3 [Homo sapiens] 175 7e-44
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens] 163 4e-40
gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens] 163 4e-40
gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens] 158 9e-39
gi|25282407 interferon-stimulated transcription factor 3, gamma ... 147 2e-35
gi|153082752 interferon regulatory factor 2 [Homo sapiens] 112 6e-25
gi|4504721 interferon regulatory factor 1 [Homo sapiens] 109 6e-24
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 57 3e-08
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 52 2e-06
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 51 2e-06
gi|239746471 PREDICTED: hypothetical protein XP_002343764 [Homo ... 46 9e-05
gi|9945318 MAX binding protein [Homo sapiens] 45 1e-04
gi|239757474 PREDICTED: similar to hCG1785205 [Homo sapiens] 45 1e-04
gi|239751984 PREDICTED: similar to hCG1785205 [Homo sapiens] 45 1e-04
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 44 3e-04
gi|7706501 WW domain binding protein 11 [Homo sapiens] 44 3e-04
gi|236459851 ubinuclein 2 [Homo sapiens] 44 3e-04
gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi... 43 7e-04
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 42 0.001
gi|33286436 gametogenetin [Homo sapiens] 42 0.001
>gi|148833515 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 1027 bits (2655), Expect = 0.0
Identities = 488/488 (100%), Positives = 488/488 (100%)
Query: 1 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD 60
MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD
Sbjct: 1 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD 60
Query: 61 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV
Sbjct: 61 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
Query: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVL 180
CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVL
Sbjct: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVL 180
Query: 181 GPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPLTDL 240
GPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPLTDL
Sbjct: 181 GPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPLTDL 240
Query: 241 EIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQ 300
EIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQ
Sbjct: 241 EIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQ 300
Query: 301 RFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLF 360
RFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLF
Sbjct: 301 RFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLF 360
Query: 361 SLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMF 420
SLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMF
Sbjct: 361 SLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMF 420
Query: 421 SGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQAPPGAGLGVGQGPW 480
SGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQAPPGAGLGVGQGPW
Sbjct: 421 SGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQAPPGAGLGVGQGPW 480
Query: 481 PMHPAGMQ 488
PMHPAGMQ
Sbjct: 481 PMHPAGMQ 488
>gi|148833492 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 1027 bits (2655), Expect = 0.0
Identities = 488/488 (100%), Positives = 488/488 (100%)
Query: 1 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD 60
MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD
Sbjct: 1 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD 60
Query: 61 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV
Sbjct: 61 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
Query: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVL 180
CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVL
Sbjct: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVL 180
Query: 181 GPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPLTDL 240
GPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPLTDL
Sbjct: 181 GPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPLTDL 240
Query: 241 EIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQ 300
EIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQ
Sbjct: 241 EIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQ 300
Query: 301 RFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLF 360
RFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLF
Sbjct: 301 RFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLF 360
Query: 361 SLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMF 420
SLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMF
Sbjct: 361 SLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMF 420
Query: 421 SGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQAPPGAGLGVGQGPW 480
SGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQAPPGAGLGVGQGPW
Sbjct: 421 SGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQAPPGAGLGVGQGPW 480
Query: 481 PMHPAGMQ 488
PMHPAGMQ
Sbjct: 481 PMHPAGMQ 488
>gi|148833488 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 1027 bits (2655), Expect = 0.0
Identities = 488/488 (100%), Positives = 488/488 (100%)
Query: 1 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD 60
MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD
Sbjct: 1 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD 60
Query: 61 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV
Sbjct: 61 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
Query: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVL 180
CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVL
Sbjct: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVL 180
Query: 181 GPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPLTDL 240
GPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPLTDL
Sbjct: 181 GPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPLTDL 240
Query: 241 EIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQ 300
EIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQ
Sbjct: 241 EIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQ 300
Query: 301 RFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLF 360
RFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLF
Sbjct: 301 RFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLF 360
Query: 361 SLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMF 420
SLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMF
Sbjct: 361 SLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMF 420
Query: 421 SGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQAPPGAGLGVGQGPW 480
SGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQAPPGAGLGVGQGPW
Sbjct: 421 SGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQAPPGAGLGVGQGPW 480
Query: 481 PMHPAGMQ 488
PMHPAGMQ
Sbjct: 481 PMHPAGMQ 488
>gi|148833496 interferon regulatory factor 5 isoform b [Homo
sapiens]
Length = 498
Score = 1019 bits (2634), Expect = 0.0
Identities = 488/498 (97%), Positives = 488/498 (97%), Gaps = 10/498 (2%)
Query: 1 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD 60
MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD
Sbjct: 1 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD 60
Query: 61 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV
Sbjct: 61 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
Query: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTL------ 174
CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTL
Sbjct: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLRPPTLQ 180
Query: 175 ----QPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLI 230
QPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLI
Sbjct: 181 PPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLI 240
Query: 231 SPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFP 290
SPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFP
Sbjct: 241 SPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFP 300
Query: 291 SPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNP 350
SPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNP
Sbjct: 301 SPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNP 360
Query: 351 IQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVP 410
IQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVP
Sbjct: 361 IQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVP 420
Query: 411 VAARLLLEMFSGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQAPPG 470
VAARLLLEMFSGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQAPPG
Sbjct: 421 VAARLLLEMFSGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQAPPG 480
Query: 471 AGLGVGQGPWPMHPAGMQ 488
AGLGVGQGPWPMHPAGMQ
Sbjct: 481 AGLGVGQGPWPMHPAGMQ 498
>gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens]
Length = 498
Score = 1019 bits (2634), Expect = 0.0
Identities = 488/498 (97%), Positives = 488/498 (97%), Gaps = 10/498 (2%)
Query: 1 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD 60
MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD
Sbjct: 1 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD 60
Query: 61 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV
Sbjct: 61 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
Query: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTL------ 174
CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTL
Sbjct: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLRPPTLQ 180
Query: 175 ----QPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLI 230
QPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLI
Sbjct: 181 PPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLI 240
Query: 231 SPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFP 290
SPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFP
Sbjct: 241 SPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFP 300
Query: 291 SPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNP 350
SPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNP
Sbjct: 301 SPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNP 360
Query: 351 IQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVP 410
IQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVP
Sbjct: 361 IQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVP 420
Query: 411 VAARLLLEMFSGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQAPPG 470
VAARLLLEMFSGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQAPPG
Sbjct: 421 VAARLLLEMFSGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQAPPG 480
Query: 471 AGLGVGQGPWPMHPAGMQ 488
AGLGVGQGPWPMHPAGMQ
Sbjct: 481 AGLGVGQGPWPMHPAGMQ 498
>gi|4504727 interferon regulatory factor 5 isoform a [Homo sapiens]
Length = 504
Score = 1016 bits (2628), Expect = 0.0
Identities = 488/504 (96%), Positives = 488/504 (96%), Gaps = 16/504 (3%)
Query: 1 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD 60
MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD
Sbjct: 1 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD 60
Query: 61 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV
Sbjct: 61 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
Query: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLT----------------EDVK 164
CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLT EDVK
Sbjct: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTPYSLLKEDVK 180
Query: 165 WPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQL 224
WPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQL
Sbjct: 181 WPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQL 240
Query: 225 LPDLLISPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISL 284
LPDLLISPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISL
Sbjct: 241 LPDLLISPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISL 300
Query: 285 EQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAH 344
EQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAH
Sbjct: 301 EQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAH 360
Query: 345 DSCPNPIQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLI 404
DSCPNPIQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLI
Sbjct: 361 DSCPNPIQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLI 420
Query: 405 TVQVVPVAARLLLEMFSGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPV 464
TVQVVPVAARLLLEMFSGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPV
Sbjct: 421 TVQVVPVAARLLLEMFSGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPV 480
Query: 465 AQAPPGAGLGVGQGPWPMHPAGMQ 488
AQAPPGAGLGVGQGPWPMHPAGMQ
Sbjct: 481 AQAPPGAGLGVGQGPWPMHPAGMQ 504
>gi|148833494 interferon regulatory factor 5 isoform d [Homo
sapiens]
Length = 514
Score = 1008 bits (2607), Expect = 0.0
Identities = 488/514 (94%), Positives = 488/514 (94%), Gaps = 26/514 (5%)
Query: 1 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD 60
MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD
Sbjct: 1 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD 60
Query: 61 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV
Sbjct: 61 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
Query: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLT----------------EDVK 164
CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLT EDVK
Sbjct: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTPYSLLKEDVK 180
Query: 165 WPPTLQPPTL----------QPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP 214
WPPTLQPPTL QPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP
Sbjct: 181 WPPTLQPPTLRPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP 240
Query: 215 ASLPPAGEQLLPDLLISPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQE 274
ASLPPAGEQLLPDLLISPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQE
Sbjct: 241 ASLPPAGEQLLPDLLISPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQE 300
Query: 275 QVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKV 334
QVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKV
Sbjct: 301 QVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKV 360
Query: 335 FWSGPCASAHDSCPNPIQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWP 394
FWSGPCASAHDSCPNPIQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWP
Sbjct: 361 FWSGPCASAHDSCPNPIQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWP 420
Query: 395 DRKPREKKLITVQVVPVAARLLLEMFSGELSWSADSIRLQISNPDLKDRMVEQFKELHHI 454
DRKPREKKLITVQVVPVAARLLLEMFSGELSWSADSIRLQISNPDLKDRMVEQFKELHHI
Sbjct: 421 DRKPREKKLITVQVVPVAARLLLEMFSGELSWSADSIRLQISNPDLKDRMVEQFKELHHI 480
Query: 455 WQSQQRLQPVAQAPPGAGLGVGQGPWPMHPAGMQ 488
WQSQQRLQPVAQAPPGAGLGVGQGPWPMHPAGMQ
Sbjct: 481 WQSQQRLQPVAQAPPGAGLGVGQGPWPMHPAGMQ 514
>gi|5453700 interferon regulatory factor 6 [Homo sapiens]
Length = 467
Score = 454 bits (1168), Expect = e-128
Identities = 244/481 (50%), Positives = 310/481 (64%), Gaps = 53/481 (11%)
Query: 12 PRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKET 71
PRRVRLKPWLVAQV+S YPGL W++ + K F IPW+HATRH P Q+ +NTIFKAWA ET
Sbjct: 5 PRRVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVET 64
Query: 72 GKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSN-------- 123
GKY EGVD+ DPAKWKA LRCALNKSR+F L+YDG +++P P KIY+VC
Sbjct: 65 GKYQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQVCDIPQPQGSII 124
Query: 124 GPAPTDSQPPEDYSFGAGEEEEEEE--------ELQRMLPSLSLTEDVKWPPTLQPPTLQ 175
P T S P ++ EE+EE+E +Q P L++
Sbjct: 125 NPGSTGSAPWDEKDNDVDEEDEEDELDQSQHHVPIQDTFPFLNI---------------- 168
Query: 176 PPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPG--PLPASLPPAGEQLL---PDLLI 230
+ SP+AP E + P PL +P A Q P+L I
Sbjct: 169 ----------NGSPMAPASVGNCSVGNCSPEAVWPKTEPLEMEVPQAPIQPFYSSPELWI 218
Query: 231 SPHMLPLTDLEIKFQYRGRP-PRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRF 289
S LP+TDL+IKFQYRG+ + +T+SNP GCRLFY L +Q ELFGP+SLEQV+F
Sbjct: 219 SS--LPMTDLDIKFQYRGKEYGQTMTVSNPQGCRLFYGDLGPMPDQEELFGPVSLEQVKF 276
Query: 290 PSPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPN 349
P PE I ++KQ+ +T++LLDV+DRGLIL++ G +YAIRLCQCKV+WSGPCA + PN
Sbjct: 277 PGPEHITNEKQKLFTSKLLDVMDRGLILEVSGHAIYAIRLCQCKVYWSGPCAPSL-VAPN 335
Query: 350 PIQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVV 409
I+R+ K KLF LE FL++LI QKGQ PPFEI+ CFGEEWPD KP E+KLI VQV+
Sbjct: 336 LIERQKKVKLFCLETFLSDLIAHQKGQIEKQPPFEIYLCFGEEWPDGKPLERKLILVQVI 395
Query: 410 PVAARLLLEMFSGELSWSAD--SIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQA 467
PV AR++ EMFSG+ + S D S+RLQIS PD+KD +V Q K+L+ I Q+Q+ QP+
Sbjct: 396 PVVARMIYEMFSGDFTRSFDSGSVRLQISTPDIKDNIVAQLKQLYRILQTQESWQPMQPT 455
Query: 468 P 468
P
Sbjct: 456 P 456
>gi|167555104 interferon regulatory factor 4 [Homo sapiens]
Length = 451
Score = 209 bits (531), Expect = 6e-54
Identities = 149/445 (33%), Positives = 214/445 (48%), Gaps = 50/445 (11%)
Query: 16 RLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
+L+ WL+ Q++S +YPGL W N EK +F IPW+HA + +++ D +FKAWA GK+
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 76 EGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPTDSQPPED 135
EG+D+ DP WK LRCALNKS DF + + + PYK+Y + PE
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIV-----------PEG 131
Query: 136 YSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPV-------VLGPPAPDPS 188
GA + E+ ++ P T P + PP+ V P P+
Sbjct: 132 AKKGAKQLTLEDPQMSMSHPYTMTTPYPSLPAQQVHNYMMPPLDRSWRDYVPDQPHPEIP 191
Query: 189 PLAPPPGNPAGFR----ELLSEVLEPGPLPASLPPAGEQLLPDLLISPHM-----LPLTD 239
P P G + G A PP E P + P + L +D
Sbjct: 192 YQCPMTFGPRGHHWQGPACENGCQVTGTFYACAPP--ESQAPGVPTEPSIRSAEALAFSD 249
Query: 240 --LEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPS 297
L I YR + LT S+P GCR+ + + +L+QV FP PED
Sbjct: 250 CRLHICLYYREILVKELTTSSPEGCRISHG---------HTYDASNLDQVLFPYPED--- 297
Query: 298 DKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKT 357
+ QR +LL L+RG++L + LYA RLCQ +++W GP A +D PN ++R+
Sbjct: 298 NGQRKNIEKLLSHLERGVVLWMAPDGLYAKRLCQSRIYWDGPLALCNDR-PNKLERDQTC 356
Query: 358 KLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLL- 416
KLF + FL+EL F + P F++ CFGEE+PD + R++KLIT V P+ AR L
Sbjct: 357 KLFDTQQFLSELQAFAH-HGRSLPRFQVTLCFGEEFPDPQ-RQRKLITAHVEPLLARQLY 414
Query: 417 --LEMFSGELSWSADSIRLQISNPD 439
+ SG D + ISNP+
Sbjct: 415 YFAQQNSGHFLRGYD-LPEHISNPE 438
>gi|4504567 interferon regulatory factor 8 [Homo sapiens]
Length = 426
Score = 200 bits (508), Expect = 3e-51
Identities = 148/410 (36%), Positives = 197/410 (48%), Gaps = 46/410 (11%)
Query: 16 RLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
RL+ WL+ Q++S YPGL W N EK +F IPW+HA + +Q+ D +IFKAWA GK+
Sbjct: 9 RLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
Query: 76 EGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPTDSQPPED 135
EG D+A+PA WK LRCALNKS DF + D + +PYK+Y + P + Q +
Sbjct: 69 EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRI-----VPEEEQKCKL 122
Query: 136 YSFGAG-EEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVLGPPAPDPSPLAPPP 194
AG E E E R + E +K P +G PSP
Sbjct: 123 GVATAGCVNEVTEMECGRS----EIDELIKEPSV--------DDYMGMIKRSPSP----- 165
Query: 195 GNPAGFRELLSEVLEPGPLP---ASLPPAGEQLLPD-LLISPHMLPLTDLEIKFQYRGRP 250
P R L LP A P G L+ H + + I F Y G+
Sbjct: 166 --PEACRSQL--------LPDWWAQQPSTGVPLVTGYTTYDAHHSAFSQMVISFYYGGKL 215
Query: 251 PRALTISNPHGCRLFYSQ--LEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLL 308
T + P GCRL SQ L T +L+GP LE VRFP + IPS++QR T +L
Sbjct: 216 VGQATTTCPEGCRLSLSQPGLPGT----KLYGPEGLELVRFPPADAIPSERQRQVTRKLF 271
Query: 309 DVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLFSLEHFLNE 368
L+RG++L Q ++ RLCQ +VF SG A PN ++R+ ++F F E
Sbjct: 272 GHLERGVLLHSSRQGVFVKRLCQGRVFCSGN-AVVCKGRPNKLERDEVVQVFDTSQFFRE 330
Query: 369 LILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLE 418
L F Q P + CFGEE+PD P KLI VQ+ + R L E
Sbjct: 331 LQQFYNSQGRLPDG-RVVLCFGEEFPDMAPLRSKLILVQIEQLYVRQLAE 379
>gi|4504725 interferon regulatory factor 3 [Homo sapiens]
Length = 427
Score = 175 bits (444), Expect = 7e-44
Identities = 143/446 (32%), Positives = 205/446 (45%), Gaps = 55/446 (12%)
Query: 16 RLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
R+ PWLV+Q++ Q G+ WVN + F IPW+H R Q+ D IF+AWA+ TG Y
Sbjct: 7 RILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQE-DFGIFQAWAEATGAYV 65
Query: 76 EGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPTDSQP--P 133
G D+ D WK N R ALN+ RL D +D P P+KIYE ++G SQP
Sbjct: 66 PGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKD-PHDPHKIYEFVNSGVGDF-SQPDTS 123
Query: 134 EDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVLGPPAPDPSPL-AP 192
D + G + +E+ L +L ++ L P PP + P P P PL +P
Sbjct: 124 PDTNGGGSTSDTQEDILDELLGNMVLA---------PLPDPGPPSLAVAPEPCPQPLRSP 174
Query: 193 PPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPLTDLEIKFQYRGRPPR 252
NP F L PL L P E + E+ YRGR
Sbjct: 175 SLDNPTPFPNLGP---SENPLKRLLVPGEE---------------WEFEVTAFYRGRQVF 216
Query: 253 ALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDK-QRFYTNQLLDVL 311
TIS P G RL S++ ++ P++L P P +D+ Y +L L
Sbjct: 217 QQTISCPEGLRLVGSEV---GDRTLPGWPVTL-----PDPGMSLTDRGVMSYVRHVLSCL 268
Query: 312 DRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPN-------PIQREVKTKLFSLEH 364
GL L GQ L+A RL C +W A + + PN + ++ + +F L
Sbjct: 269 GGGLALWRAGQWLWAQRLGHCHTYW----AVSEELLPNSGHGPDGEVPKDKEGGVFDLGP 324
Query: 365 FLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFS-GE 423
F+ +LI F +G + P + ++FC GE WP +P K+L+ V+VVP R L+EM G
Sbjct: 325 FIVDLITFTEG-SGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGG 383
Query: 424 LSWSADSIRLQISNPDLKDRMVEQFK 449
S +++ L ISN +Q+K
Sbjct: 384 ASSLENTVDLHISNSHPLSLTSDQYK 409
>gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]
Length = 516
Score = 163 bits (412), Expect = 4e-40
Identities = 142/481 (29%), Positives = 206/481 (42%), Gaps = 70/481 (14%)
Query: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
RV WL+ +++S Y GLQW++ + F +PW+H R S+ D IFKAWA G+
Sbjct: 24 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGR 82
Query: 74 YTEG---------VDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIY----EV 120
+ + A+ A WK N RCAL +R F ++ D D P P+K+Y E+
Sbjct: 83 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADPHKVYALSREL 141
Query: 121 C-SNGP--------APTDSQPPEDYSFGAGEEEEEEE-ELQRMLPSLSLTEDVKWPPTLQ 170
C GP AP PP+ G + LP+ + + +Q
Sbjct: 142 CWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQ 201
Query: 171 PPTLQPPVVLGPPAPDPSPLAPP----------------PGNPAGFRELLSEVLE----P 210
L ++ DP P P PG PAG EL +E P
Sbjct: 202 QSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAG--ELYGWAVETTPSP 259
Query: 211 GPLPASL-------PPAGEQLLPDLLISPHMLPLTD------LEIKFQYRGRPPRALTIS 257
GP PA+L P + Q P L SP L++ Y+GR +
Sbjct: 260 GPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVG 319
Query: 258 NPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLIL 317
+P C Y + + +QV FPSP ++P KQ YT +LL + GL L
Sbjct: 320 HP-SCTFLYGPPDPAVRATDP------QQVAFPSPAELPDQKQLRYTEELLRHVAPGLHL 372
Query: 318 QLQGQDLYAIRLCQCKVFW--SGPCASAHDSCPN-PIQREVKTKLFSLEHFLNELILFQK 374
+L+G L+A R+ +CKV+W GP SA S P + R T +F F EL+ F+
Sbjct: 373 ELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRA 432
Query: 375 GQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSADSIRLQ 434
Q P + I+ FG++ +P+EK L+ V++ P R+ LE E S DS L
Sbjct: 433 RQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLS 492
Query: 435 I 435
+
Sbjct: 493 L 493
>gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]
Length = 503
Score = 163 bits (412), Expect = 4e-40
Identities = 142/481 (29%), Positives = 206/481 (42%), Gaps = 70/481 (14%)
Query: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
RV WL+ +++S Y GLQW++ + F +PW+H R S+ D IFKAWA G+
Sbjct: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGR 69
Query: 74 YTEG---------VDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIY----EV 120
+ + A+ A WK N RCAL +R F ++ D D P P+K+Y E+
Sbjct: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADPHKVYALSREL 128
Query: 121 C-SNGP--------APTDSQPPEDYSFGAGEEEEEEE-ELQRMLPSLSLTEDVKWPPTLQ 170
C GP AP PP+ G + LP+ + + +Q
Sbjct: 129 CWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQ 188
Query: 171 PPTLQPPVVLGPPAPDPSPLAPP----------------PGNPAGFRELLSEVLE----P 210
L ++ DP P P PG PAG EL +E P
Sbjct: 189 QSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAG--ELYGWAVETTPSP 246
Query: 211 GPLPASL-------PPAGEQLLPDLLISPHMLPLTD------LEIKFQYRGRPPRALTIS 257
GP PA+L P + Q P L SP L++ Y+GR +
Sbjct: 247 GPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVG 306
Query: 258 NPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLIL 317
+P C Y + + +QV FPSP ++P KQ YT +LL + GL L
Sbjct: 307 HP-SCTFLYGPPDPAVRATDP------QQVAFPSPAELPDQKQLRYTEELLRHVAPGLHL 359
Query: 318 QLQGQDLYAIRLCQCKVFW--SGPCASAHDSCPN-PIQREVKTKLFSLEHFLNELILFQK 374
+L+G L+A R+ +CKV+W GP SA S P + R T +F F EL+ F+
Sbjct: 360 ELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRA 419
Query: 375 GQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSADSIRLQ 434
Q P + I+ FG++ +P+EK L+ V++ P R+ LE E S DS L
Sbjct: 420 RQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLS 479
Query: 435 I 435
+
Sbjct: 480 L 480
>gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens]
Length = 474
Score = 158 bits (400), Expect = 9e-39
Identities = 134/486 (27%), Positives = 197/486 (40%), Gaps = 109/486 (22%)
Query: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
RV WL+ +++S Y GLQW++ + F +PW+H R S+ D IFKAWA G+
Sbjct: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGR 69
Query: 74 YTEG---------VDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIY----EV 120
+ + A+ A WK N RCAL +R F ++ D D P P+K+Y E+
Sbjct: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADPHKVYALSREL 128
Query: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVL 180
C + G G ++ E E P PP
Sbjct: 129 C--------------WREGPGTDQTEAEA----------------------PAAVPPPQG 152
Query: 181 GPPAP----------DPSPLAPPPGNPAGFR-----------ELLSEVLEPGPLPASLPP 219
GPP P P PL P G+ LL+ P+P P
Sbjct: 153 GPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPG 212
Query: 220 AGEQLLP-------------------DLLISPHMLPLTD--------LEIKFQYRGRPPR 252
G++ LP + +SP T L++ Y+GR
Sbjct: 213 EGQEGLPLTGACAGGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVL 272
Query: 253 ALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLD 312
+ +P C Y + + +QV FPSP ++P KQ YT +LL +
Sbjct: 273 QKVVGHP-SCTFLYGPPDPAVRATDP------QQVAFPSPAELPDQKQLRYTEELLRHVA 325
Query: 313 RGLILQLQGQDLYAIRLCQCKVFW--SGPCASAHDSCPN-PIQREVKTKLFSLEHFLNEL 369
GL L+L+G L+A R+ +CKV+W GP SA S P + R T +F F EL
Sbjct: 326 PGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQEL 385
Query: 370 ILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSAD 429
+ F+ Q P + I+ FG++ +P+EK L+ V++ P R+ LE E S D
Sbjct: 386 VEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLD 445
Query: 430 SIRLQI 435
S L +
Sbjct: 446 SSSLSL 451
>gi|25282407 interferon-stimulated transcription factor 3, gamma
48kDa [Homo sapiens]
Length = 393
Score = 147 bits (372), Expect = 2e-35
Identities = 120/408 (29%), Positives = 179/408 (43%), Gaps = 43/408 (10%)
Query: 16 RLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
+L+ W+V QV S Q+PG+ W + K +F IPW+HA + +D D FKAWA GKY
Sbjct: 11 KLRNWVVEQVESGQFPGVCWDDTAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 70
Query: 76 EGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYE-----VCSNGPAPTDS 130
EG D PA WK LRCALNKS +F+ + + R +PYK+Y+ + S P
Sbjct: 71 EG-DTGGPAVWKTRLRCALNKSSEFKEVPERGRMDVAEPYKVYQLLPPGIVSGQPGTQKV 129
Query: 131 QPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVLGPPAPDPSPL 190
+S + E +EEE+ +Q S S+ +D + V S
Sbjct: 130 PSKRQHSSVSSERKEEEDAMQNCTLSPSVLQDSL---NNEEEGASGGAVHSDIGSSSSSS 186
Query: 191 APPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPLTDLEIKFQYRGRP 250
+P P EV + P G+Q + L+ P P L + F Y GR
Sbjct: 187 SPEP----------QEVTDTTEAPFQ----GDQRSLEFLLPPE--PDYSLLLTFIYNGRV 230
Query: 251 PRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDV 310
+ + CRL + S+EQV FP P + T +LL
Sbjct: 231 VGEAQVQSLD-CRLVAEPSGSES---------SMEQVLFPKPGPLEP------TQRLLSQ 274
Query: 311 LDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLFSLEHFLNELI 370
L+RG+++ + L+ RLC + W+ P A P+ + +LF +F +L+
Sbjct: 275 LERGILVASNPRGLFVQRLCPIPISWNAPQAPPGPG-PHLLPSNECVELFRTAYFCRDLV 333
Query: 371 LFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLE 418
+ +G PP F++ F EE + LITV++ AR LLE
Sbjct: 334 RYFQG-LGPPPKFQVTLNFWEESHGSSHTPQNLITVKMEQAFARYLLE 380
>gi|153082752 interferon regulatory factor 2 [Homo sapiens]
Length = 349
Score = 112 bits (281), Expect = 6e-25
Identities = 53/142 (37%), Positives = 80/142 (56%), Gaps = 5/142 (3%)
Query: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKE 70
P R+R++PWL Q+NS PGL+W+N EKK+F IPW HA RHG + D +F+ WA
Sbjct: 2 PVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIH 61
Query: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPTDS 130
TGK+ GVD+ DP WKAN RCA+N D + D +++Y + P
Sbjct: 62 TGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRM-----LPLSE 116
Query: 131 QPPEDYSFGAGEEEEEEEELQR 152
+P + E+E++ + +++
Sbjct: 117 RPSKKGKKPKTEKEDKVKHIKQ 138
>gi|4504721 interferon regulatory factor 1 [Homo sapiens]
Length = 325
Score = 109 bits (272), Expect = 6e-24
Identities = 47/110 (42%), Positives = 67/110 (60%)
Query: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKE 70
P R+R++PWL Q+NS Q PGL W+N E+ +F IPW+HA +HG + D +F++WA
Sbjct: 2 PITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIH 61
Query: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
TG+Y G E DP WKAN RCA+N D + D R+ ++Y +
Sbjct: 62 TGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 111
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 57.4 bits (137), Expect = 3e-08
Identities = 39/112 (34%), Positives = 52/112 (46%), Gaps = 17/112 (15%)
Query: 141 GEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVLGPPAPD-PSPLAPPPGNPAG 199
GEE+EE + M+P+ E PP L PP PP L PP+ P PL PPP P
Sbjct: 378 GEEKEERAVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPPLPPPSTSPPPPLCPPPPPP-- 435
Query: 200 FRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPLTDLEIKFQYRGRPP 251
+ P PLP+ PP ++ + P ++P T + RGRPP
Sbjct: 436 --------VSPPPLPSPPPPPAQEEQEE--SPPPVVPAT----CSRKRGRPP 473
Score = 35.8 bits (81), Expect = 0.090
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 155 PSLSLTEDVKWPPTLQ-PPTLQPPVVLGPPAP-DPSPLAPPPGNP 197
P + ED PP ++ P L+PP+ PP P +P+P+ PP P
Sbjct: 543 PRRFMDEDPPKPPKVEVSPVLRPPITTSPPVPQEPAPVPSPPRAP 587
Score = 30.8 bits (68), Expect = 2.9
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 18/100 (18%)
Query: 155 PSLSLTEDVKWPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVL------ 208
P + ++ ++ P T PP Q P + P P+P + P P R +L E
Sbjct: 555 PKVEVSPVLRPPITTSPPVPQEPAPVPSPPRAPTPPSTPVPLPEKRRSILREPTFRWTSL 614
Query: 209 ---------EPGPLPASLP---PAGEQLLPDLLISPHMLP 236
P P PA P PA P LL +P P
Sbjct: 615 TRELPPPPPAPPPPPAPSPPPAPATSSRRPLLLRAPQFTP 654
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 51.6 bits (122), Expect = 2e-06
Identities = 54/161 (33%), Positives = 74/161 (45%), Gaps = 20/161 (12%)
Query: 92 CALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPTDSQPPEDYSFGAGEEE-----EE 146
CA+ + +GP + PQP +++ + P S PE+ EE +
Sbjct: 780 CAVPEEPHLSPQAEGPH-LSPQPEELH-LSPQTEEPHLSPVPEEPCLSPQPEESHLSPQS 837
Query: 147 EEELQRMLPSLS-LTEDVKWPPTLQPPTLQPPVVLGP-PAPDPSPLAPPPGNPAGFRELL 204
EE P S L+ +++ PP L P +PP G PAP+ PL PPPG P+ LL
Sbjct: 838 EEPCLSPRPEESHLSPELEKPP-LSPRPEKPPEEPGQCPAPEELPLFPPPGEPS-LSPLL 895
Query: 205 SE--VLEPG-----PLPASLP--PAGEQLLPDLLISPHMLP 236
E + EPG PLP LP P+GE L L+ P LP
Sbjct: 896 GEPALSEPGEPPLSPLPEELPLSPSGEPSLSPQLMPPDPLP 936
Score = 39.3 bits (90), Expect = 0.008
Identities = 37/139 (26%), Positives = 49/139 (35%), Gaps = 7/139 (5%)
Query: 105 DGPRDMPPQPYKIYEVCSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVK 164
+ P PP+ + + +P + PP E L L+ +
Sbjct: 500 ESPLSPPPESSPFSPLEESPLSPPEESPPSPALETPLSPPPEASPLSPPFEESPLSPPPE 559
Query: 165 WPPTLQPPT---LQPPVVLGP--PAPDPSPLAPPPGNPAGFRELLSEVLEPGP--LPASL 217
PT PP L PP P P P+ SP++PPP F L P P P S
Sbjct: 560 ELPTSPPPEASRLSPPPEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPEESPLSP 619
Query: 218 PPAGEQLLPDLLISPHMLP 236
PP +L P SP P
Sbjct: 620 PPEASRLSPPPEDSPMSPP 638
Score = 37.0 bits (84), Expect = 0.041
Identities = 48/163 (29%), Positives = 60/163 (36%), Gaps = 37/163 (22%)
Query: 97 SRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPTDSQ---PPEDYSFGAGEEEEEEE---EL 150
SR F + P PP+ + P P S+ PPED EE E+
Sbjct: 597 SRLFPPFEESPLSPPPEESPL------SPPPEASRLSPPPEDSPMSPPPEESPMSPPPEV 650
Query: 151 QRMLP-------SLSLTEDVKWPPTLQPPTLQPPVV--LGPPA--------PDPSPLAPP 193
R+ P S E PP + PT PP L PP P+ SP +PP
Sbjct: 651 SRLSPLPVVSRLSPPPEESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPEDSPASPP 710
Query: 194 PGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLP 236
P + L+S LE PL LP E L PH+ P
Sbjct: 711 PED-----SLMSLPLEESPL---LPLPEEPQLCPRSEGPHLSP 745
Score = 36.2 bits (82), Expect = 0.069
Identities = 46/163 (28%), Positives = 56/163 (34%), Gaps = 37/163 (22%)
Query: 105 DGPRDMPPQPYKIYEVCSNGPAPTDSQ---PPEDYSFGAGEEEEEEE---ELQRMLPSLS 158
+ P PP E P P S+ PPE+ EE E R+ P
Sbjct: 551 ESPLSPPP------EELPTSPPPEASRLSPPPEESPMSPPPEESPMSPPPEASRLFPPFE 604
Query: 159 LTEDVKWPPTLQPPTLQPPVV--LGPPAPDPSPLAPPPG-------------NPAGFREL 203
E PP + P PP L PP P+ SP++PPP +P
Sbjct: 605 --ESPLSPPPEESPLSPPPEASRLSPP-PEDSPMSPPPEESPMSPPPEVSRLSPLPVVSR 661
Query: 204 LSEVLEPGPL-------PASLPPAGEQLLPDLLISPHMLPLTD 239
LS E PL P S PP +L P SP P D
Sbjct: 662 LSPPPEESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPED 704
Score = 35.0 bits (79), Expect = 0.15
Identities = 41/143 (28%), Positives = 52/143 (36%), Gaps = 30/143 (20%)
Query: 107 PRDMPPQPYKIYEVCSNGPAPTDSQPPE-------DYSFGAGEEEEEEEELQRMLPSLSL 159
P+ MPP P P T + PP +Y FGA + + E L
Sbjct: 927 PQLMPPDPLPP----PLSPIITAAAPPALSPLGELEYPFGAKGDSDPESPLAA------- 975
Query: 160 TEDVKWPPTLQPPTLQPPVVLGPPAPDPSP---LAPPPGNPAG-FRELLSEVLEPGPLPA 215
P L+ P + PP P+P P L P PG+P G +L E L P P
Sbjct: 976 -------PILETP-ISPPPEANCTDPEPVPPMILPPSPGSPVGPASPILMEPLPPQCSPL 1027
Query: 216 SLPPAGEQLLPDLLISPHMLPLT 238
Q P SP LPL+
Sbjct: 1028 LQHSLVPQNSPPSQCSPPALPLS 1050
Score = 35.0 bits (79), Expect = 0.15
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 183 PAPDPSPLAPPPGNP--AGFRELLSEVLEPGPLPASLPPA 220
P+P PSPLAP P +P EL +E L P+P+ LP A
Sbjct: 4914 PSPPPSPLAPSPASPPTEPLVELPTEPLAEPPVPSPLPLA 4953
Score = 33.9 bits (76), Expect = 0.34
Identities = 59/213 (27%), Positives = 75/213 (35%), Gaps = 32/213 (15%)
Query: 107 PRDMPP-QPYKIYEVCSNGPAP---TDSQPPEDYSF----------GAGEEEEEEEELQR 152
P D P +P +Y C P T QP E G E + E L
Sbjct: 377 PGDTPTDEPDALYVACQGQPKGGHVTSMQPKEPGPLQCEAKPLGKAGVQLEPQLEAPLNE 436
Query: 153 MLPSLSLTEDVKW-PPTLQPPTLQPPVV--LGPPAPDPSPLAPPPGNPAGFRELLSEVLE 209
+P L E+ PP + PT PP L PP P+ P +P P R L L
Sbjct: 437 EMPLLPPPEESPLSPPPEESPTSPPPEASRLSPP-PEELPASPLPEALHLSRPLEESPLS 495
Query: 210 PGP--LPASLPPAGEQLLP--DLLISP--HMLPLTDLEIKFQYRGRPPRALTISNPHGCR 263
P P P S PP P + +SP P LE PP A +S P
Sbjct: 496 PPPEESPLSPPPESSPFSPLEESPLSPPEESPPSPALETPL---SPPPEASPLSPP---- 548
Query: 264 LFYSQLEATQEQVELFGPISLEQVRFPSPEDIP 296
S L E++ P ++ P PE+ P
Sbjct: 549 FEESPLSPPPEELPTSPPPEASRLS-PPPEESP 580
Score = 31.2 bits (69), Expect = 2.2
Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 34/159 (21%)
Query: 106 GPRDMPPQPYKIYEVCSNGPA--PTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDV 163
GP +P P + S GP P PP +E + Q PS L +
Sbjct: 4285 GPPRLPAPPGAL----STGPVLGPVHPTPPPS------SPQEPKRPSQLPSPSSQLPTEA 4334
Query: 164 KWPPTLQPPTLQPPVVLGPPAPDPSPLAPPPG--NPAGFR---ELLSEVLEPGPLPASL- 217
+ PPT G P P L PPPG +PA + L S+ L P P +L
Sbjct: 4335 QLPPTHP----------GTPKPQGPTLEPPPGRVSPAAAQLADTLFSKGLGPWDPPDNLA 4384
Query: 218 ---PPAGEQLLPDLL--ISPHMLP-LTDLEIKFQYRGRP 250
P L+P L ++ ++P + L IK + R P
Sbjct: 4385 ETQKPEQSSLVPGHLDQVNGQVVPEASQLSIKQEPREEP 4423
Score = 30.8 bits (68), Expect = 2.9
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 137 SFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVLGP---PAPDPSPLAPP 193
S+GA E+L R + T+D L P L P +LGP P+ D PP
Sbjct: 2719 SWGAEPSSPAFEQLSRGQTPFAGTQDKSSLVGLPPSKLSGP-ILGPGSFPSDDRLSRPPP 2777
Query: 194 PGNPAGF----RELL---SEVLEPGPLPASLPPAGEQ 223
P P+ R+L+ + P P SLP +Q
Sbjct: 2778 PATPSSMDVNSRQLVGGSQAFYQRAPYPGSLPLQQQQ 2814
Score = 30.0 bits (66), Expect = 5.0
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 134 EDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVLGP-PAPDPSPLAP 192
E S G G +E Q + PS D+ P + P QPP+ P P P S A
Sbjct: 2339 EPQSPGLGLRPQEPPPAQALAPSPPSHPDIFRPGSYTDPYAQPPLTPRPQPPPPESCCAL 2398
Query: 193 PP 194
PP
Sbjct: 2399 PP 2400
Score = 29.3 bits (64), Expect = 8.5
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 166 PPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLL 225
PP +P P+ P +P PL P P L+E P PLP + P +
Sbjct: 4909 PPPEEPSPPPSPLAPSPASPPTEPLVELPTEP------LAEPPVPSPLPLASSPESARPK 4962
Query: 226 P 226
P
Sbjct: 4963 P 4963
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 51.2 bits (121), Expect = 2e-06
Identities = 33/92 (35%), Positives = 41/92 (44%), Gaps = 23/92 (25%)
Query: 161 EDVKWPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLE----------- 209
E+ K PP L PP PP+ PP P P PPP +PA + L+ VLE
Sbjct: 767 EEKKPPPALPPP---PPLAKFPPPSQPQPPPPPPPSPASLLKSLASVLEGQKYCYRGTGA 823
Query: 210 -----PGPLPASL----PPAGEQLLPDLLISP 232
PGPLP + PP+G LP +P
Sbjct: 824 AVSTRPGPLPTTQYSPGPPSGATALPPTSAAP 855
>gi|239746471 PREDICTED: hypothetical protein XP_002343764 [Homo
sapiens]
Length = 362
Score = 45.8 bits (107), Expect = 9e-05
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 35/163 (21%)
Query: 23 AQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEAD 82
AQ+ S Y GL W + K LF IPW+H + G ++AW GK+ EG ++
Sbjct: 15 AQIESGCYVGLCWEDAGKTLFRIPWKHVAKQG---------YQAWMVHKGKHLEGTNKEA 65
Query: 83 PAKWKANLRCALNKSRDFRL---IYDGPRDMP-PQPYKIYEVCSNGPAPTDSQPPEDYSF 138
P + + ++ L + G + P+ E ++ P T S P
Sbjct: 66 PPPGRNDSTLPSTRAPPSGLQEPLCTGGNSLGIPE-----ESQASSPTLTASSPNAQDGS 120
Query: 139 GAGEEEEEEEELQRMLPSLSLTEDVKWPPTL-QPPTLQPPVVL 180
G E+E++E WP L Q +L PP++L
Sbjct: 121 GFATEDEDKE----------------WPHRLAQQGSLLPPILL 147
>gi|9945318 MAX binding protein [Homo sapiens]
Length = 582
Score = 45.4 bits (106), Expect = 1e-04
Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 140 AGEEEE----EEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVLGPPAPDPSPLAPPPG 195
A EE+E E+E Q + SL P +P PP+ L PPAP P+P PP
Sbjct: 23 AREEQERLRLEQEREQEQKKANSLARLAHTLPVEEPRMEAPPLPLSPPAPPPAP-PPPLA 81
Query: 196 NPAGFRELLSEVL--EPGPLPASLP-PAGEQLLPDLLISPHMLPLTDLEIK 243
PA + V+ P PLP P PA Q LP P ++ L IK
Sbjct: 82 TPAPLTVIPIPVVTNSPQPLPPPPPLPAAAQPLPLAPRQPALVGAPGLSIK 132
Score = 33.1 bits (74), Expect = 0.59
Identities = 32/110 (29%), Positives = 39/110 (35%), Gaps = 13/110 (11%)
Query: 120 VCSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRML---PSLSLTEDVKWPPTLQPPTLQP 176
V +N P P PP A + Q L P LS+ E P Q PT P
Sbjct: 93 VVTNSPQPLPPPPP----LPAAAQPLPLAPRQPALVGAPGLSIKEPAPLPSRPQVPTPAP 148
Query: 177 PVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLP 226
+ PD PP G+P + L + VL P P P Q P
Sbjct: 149 LL------PDSKATIPPNGSPKPLQPLPTPVLTIAPHPGVQPQLAPQQPP 192
>gi|239757474 PREDICTED: similar to hCG1785205 [Homo sapiens]
Length = 362
Score = 45.1 bits (105), Expect = 1e-04
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 23 AQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEAD 82
AQ+ S Y GL W + K LF IPW+H + G ++AW GK+ EG ++
Sbjct: 15 AQIESGCYVGLCWEDAGKTLFRIPWKHVAKQG---------YQAWMVHKGKHLEGTNKEA 65
Query: 83 P 83
P
Sbjct: 66 P 66
>gi|239751984 PREDICTED: similar to hCG1785205 [Homo sapiens]
Length = 362
Score = 45.1 bits (105), Expect = 1e-04
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 23 AQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEAD 82
AQ+ S Y GL W + K LF IPW+H + G ++AW GK+ EG ++
Sbjct: 15 AQIESGCYVGLCWEDAGKTLFRIPWKHVAKQG---------YQAWMVHKGKHLEGTNKEA 65
Query: 83 P 83
P
Sbjct: 66 P 66
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 44.3 bits (103), Expect = 3e-04
Identities = 34/104 (32%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 124 GPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVK------WPPTLQPPTLQPP 177
GP P + P G EE E+++ Q+ PS + V PP PP PP
Sbjct: 117 GPPPPPALPTWSVPNGPSPEEVEQQKRQQPGPSEHIERRVSNAGGPPAPPAGGPPP--PP 174
Query: 178 VVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAG 221
PP P P P PP G PA PLPA+ P G
Sbjct: 175 GPPPPPGPPPPPGLPPSGVPAAAHGAGGGPPPAPPLPAAQGPGG 218
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 44.3 bits (103), Expect = 3e-04
Identities = 40/142 (28%), Positives = 56/142 (39%), Gaps = 26/142 (18%)
Query: 127 PTDSQPPEDYSFGAGEEE----EEEEELQRMLPSLSLTEDVKWPPTLQ---PPTLQPPVV 179
P + + E++S E++ E E++ Q+ S ++ + Q P ++ P +
Sbjct: 343 PEEGREVEEFSEDDDEDDSDDSEAEKQSQKQHKEESHSDGTSTASSQQQAPPQSVPPSQI 402
Query: 180 LGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPLTD 239
PP P P PL PPP P + PGP P LPP P L P M L
Sbjct: 403 QAPPMPGPPPLGPPPAPP---------LRPPGP-PTGLPPGPPPGAPPFLRPPGMPGL-- 450
Query: 240 LEIKFQYRGRPPRALTISNPHG 261
RG PR L P G
Sbjct: 451 -------RGPLPRLLPPGPPPG 465
Score = 42.0 bits (97), Expect = 0.001
Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 134 EDYSFGAGEEEEEEEEL-QRMLPSLSLTEDVKWPPTLQPPTLQPPVVLGPPA---PDPSP 189
E +S G +++ Q + PS + PP L PP P GPP P P P
Sbjct: 377 ESHSDGTSTASSQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPP 436
Query: 190 LAPP----PGNPAGFRELLSEVLEPGPLPASLP 218
APP PG P G R L +L PGP P P
Sbjct: 437 GAPPFLRPPGMP-GLRGPLPRLLPPGPPPGRPP 468
Score = 40.0 bits (92), Expect = 0.005
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 166 PPTLQPPTLQPPVVLGPPAPDPS--PLAPPPGNPAGFRELLSEVLEPGPLPASLPP 219
PP PP L+PP + G P P P PPPG P G L PGP P PP
Sbjct: 434 PPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPP 489
Score = 34.7 bits (78), Expect = 0.20
Identities = 29/89 (32%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 150 LQRMLPSLSLTEDVKWPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLE 209
L R+LP PP PP L P GPP P P PPP P G ++
Sbjct: 454 LPRLLPPGPPPGRPPGPPPGPPPGLPP----GPPPRGPPPRLPPPA-PPGIPPPRPGMMR 508
Query: 210 P------GPLPASLPPAGEQLLPDLLISP 232
P GP P L P P +L +P
Sbjct: 509 PPLVPPLGPAPPGLFPPAPLPNPGVLSAP 537
Score = 33.9 bits (76), Expect = 0.34
Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 166 PPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP----ASLPP 219
PP PP L PP G P P P + PP P G + P PLP S PP
Sbjct: 483 PPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLG--PAPPGLFPPAPLPNPGVLSAPP 538
>gi|236459851 ubinuclein 2 [Homo sapiens]
Length = 1347
Score = 43.9 bits (102), Expect = 3e-04
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 107 PRDMP---PQPYKIYEVCSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDV 163
PR+ P PQPY+ + PAP + P D + E+ + E+ R P +SL +
Sbjct: 32 PREPPRLEPQPYR-EPARAEPPAPREPAPRSDAQPPSREKPLPQREVSRAEPPMSLQRE- 89
Query: 164 KWPPTLQPPTLQPPVVLGPPAP--DPSPLAPPPGNP 197
PP +PP PP+ L PP P S PP P
Sbjct: 90 --PPRPEPPPPFPPLPLQPPPPRESASRAEQPPRPP 123
>gi|239508790 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 490
Score = 42.7 bits (99), Expect = 7e-04
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 110 MPPQPYKIYEVCSNGPAP-TDSQPPEDYSFGAGEEEEEEEELQRMLPSL--------SLT 160
+P P + + S P+P +D PP D + ++ +L + SL
Sbjct: 244 VPSPPSDVPSLLSGVPSPPSDISPPSDVPSLLSDVPSLPSDVPSLLSGVPSPPSDVPSLL 303
Query: 161 EDVKWPPTLQP-PTLQPPVVLGPPAPDPSPLAPPPGN---PAGFRELLSEVLEP---GPL 213
DV PP+ P P P++ G P+P PS + PP + P LLS V P PL
Sbjct: 304 SDVPSPPSDVPSPPSDIPLLSGVPSP-PSDVPSPPSDVPSPPSDVPLLSGVPSPLSDVPL 362
Query: 214 PASLPPAGEQLLPDLLISPHMLPLTDLEIKFQYRGRPPRALT 255
+ +P + P LL+SPH L ++ + +R P L+
Sbjct: 363 LSGVPSPPSDV-PSLLMSPHRLLMSHYSLVSPHRLDVPSLLS 403
Score = 37.7 bits (86), Expect = 0.024
Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 17/137 (12%)
Query: 107 PRDMPPQPYKIYEVCSNGPAPTD-SQPPEDYSF--GAGEEEEEEEELQRMLPSLSLTEDV 163
P D+P P + S+ P +D PP D + L +PSLS V
Sbjct: 188 PSDVPSPPSDVPSPPSDVPLLSDVPSPPSDVPLLSDVPSPPSDVPSLPSDVPSLS---GV 244
Query: 164 KWPPTLQPPTLQ----PPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPP 219
PP+ P L PP + PP+ PS L+ P P+ LLS V P P+ +P
Sbjct: 245 PSPPSDVPSLLSGVPSPPSDISPPSDVPSLLSDVPSLPSDVPSLLSGVPSP---PSDVP- 300
Query: 220 AGEQLLPDLLISPHMLP 236
LL D+ P +P
Sbjct: 301 ---SLLSDVPSPPSDVP 314
Score = 37.4 bits (85), Expect = 0.031
Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 158 SLTEDVKWPPTLQPPTLQ--PPVVLG---PPAPDPSPLAPPPGNPAGFRELLSEVLEPG- 211
SL DV PP+ P L P ++ G PP+ PSP + P P+ LLS V P
Sbjct: 130 SLPSDVSSPPSDVPSLLSDVPSLLSGVPSPPSDVPSPPSDVPSPPSDVPSLLSGVPSPPS 189
Query: 212 --PLPAS---LPPAGEQLLPDLLISPHMLPL 237
P P S PP+ LL D+ P +PL
Sbjct: 190 DVPSPPSDVPSPPSDVPLLSDVPSPPSDVPL 220
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
Query: 155 PSLSLTEDVKWPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP 214
P + PP PP L P + G P+P SPLA PP P L L+ P P
Sbjct: 579 PPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPP--PQAPPXLALPPLQAPPSP 636
Query: 215 ASLPPAGEQLLPDLLISPHMLPLTDLEIKFQYRGRPPRALTISNP 259
+ PP P +P+ L + L+ F PP S P
Sbjct: 637 PASPPLSPLATPSPQ-APNALAVHLLQAPFSPPPSPPVQAPFSPP 680
Score = 38.1 bits (87), Expect = 0.018
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 166 PPTLQPPTLQPPVVLGPPAPDPSP-----LAPPPGNPAGFRELLSEVLEPGPLPASLPPA 220
PP+ PP+L P + PP+P SP PPP P L + L+ P P + PP
Sbjct: 691 PPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPP---PLAAPPLQVPPSPPASPPM 747
Query: 221 GEQLLPDLLISPHMLPLTDLEIKFQYRGRPPRALTIS 257
P + P +L L++ PP +L +S
Sbjct: 748 SPSATPPPRVPP-LLAAPPLQVP----PSPPASLPMS 779
Score = 35.0 bits (79), Expect = 0.15
Identities = 46/161 (28%), Positives = 57/161 (35%), Gaps = 16/161 (9%)
Query: 107 PRDMPPQPYKIYEVCSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWP 166
P +PP P + + P + PP A + S S T + P
Sbjct: 703 PLQVPPSPPASPPMSPSATPPPQAPPP----LAAPPLQVPPSPPASPPMSPSATPPPRVP 758
Query: 167 PTLQPPTLQPPVVLGPPAPDP-SPLA-PPPGNPAGFRELLSEVLEPGPLPASLP------ 218
P L P LQ P PPA P SPLA PPP P + L P P PAS P
Sbjct: 759 PLLAAPPLQVPP--SPPASLPMSPLAKPPPQAPPALATPPLQAL-PSP-PASFPGQAPFS 814
Query: 219 PAGEQLLPDLLISPHMLPLTDLEIKFQYRGRPPRALTISNP 259
P+ + L P P Q PP + T+ P
Sbjct: 815 PSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAP 855
Score = 35.0 bits (79), Expect = 0.15
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 155 PSLSLT-EDVKWPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNP---------AGFRELL 204
PS SL + PP PP L P++ PP+P SP P P +G R L
Sbjct: 815 PSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPR--L 872
Query: 205 SEVLEPG-PLPASLPPAGEQLLPDL 228
+ L PG P P S P+ PDL
Sbjct: 873 TLALAPGPPPPPSRSPSSTLSGPDL 897
Score = 32.7 bits (73), Expect = 0.76
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 22/77 (28%)
Query: 166 PPTLQPPTLQPPVVLGP----PAPDPSPL------APPPGNPAGFRELLSEVLEPGPLPA 215
PP + PP LGP P PSP PPP N A PLPA
Sbjct: 282 PPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAA------------TPLPA 329
Query: 216 SLPPAGEQLLPDLLISP 232
+LPP+ P L P
Sbjct: 330 TLPPSPPLATPLPLAPP 346
Score = 32.7 bits (73), Expect = 0.76
Identities = 34/121 (28%), Positives = 42/121 (34%), Gaps = 11/121 (9%)
Query: 125 PAPTDSQPPEDYSFGAGEEEEEEEELQ----RMLPSLSLTEDVKWPPTLQPPTLQPPVVL 180
P+P + PPE S A + L + LPS L+ PP P PP+
Sbjct: 573 PSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQA 632
Query: 181 GPPAPDPSPLAP-----PPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHML 235
P P PL+P P A LL P P P P P +SP
Sbjct: 633 PPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPP--VSPSAT 690
Query: 236 P 236
P
Sbjct: 691 P 691
Score = 32.3 bits (72), Expect = 1.00
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 19/114 (16%)
Query: 155 PSLSLTEDVKWPP-----TLQPPTLQPPVVLGPPAPDPSPLAPP-PGNPAGFRELLSEVL 208
PS S T+ PP T P TL P PP P PLAPP P P + L S
Sbjct: 307 PSPSGTKARPVPPPDNAATPLPATLPP----SPPLATPLPLAPPSPSAPPSLQTLPSPPA 362
Query: 209 EPGPLPASLPPAGEQLLPDLLISPHMLPLTDLEIKFQYRG----RPPRALTISN 258
P P+ PP+ P + P + + +++ PP L +S+
Sbjct: 363 TP---PSQAPPS--MTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPPSPLALSS 411
Score = 32.0 bits (71), Expect = 1.3
Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 155 PSLSLTEDVKWPPTLQPPTLQP-------PVVLGPPAPDPSPL-APPPGNPAGFRELLSE 206
P+ T ++ P+L PP LQ P + PP P P PL APP E S
Sbjct: 527 PASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSS 586
Query: 207 VLEPGP-LPASLPPAGEQLLPDLLISPHMLP 236
+ P P P +L Q LP +SP P
Sbjct: 587 IATPPPQAPPALASPPLQGLPSPPLSPLATP 617
Score = 31.2 bits (69), Expect = 2.2
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 153 MLPSLSLTEDVKWPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGP 212
++P L T+ PP+LQ P P + PP + LAPPP A L + LE P
Sbjct: 508 IMPPLE-TQSSLAPPSLQTP---PASLTTPPLENLPSLAPPPLQTAS-APLTTPHLETPP 562
Query: 213 LPASLP 218
PA P
Sbjct: 563 CPAPCP 568
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 42.0 bits (97), Expect = 0.001
Identities = 39/118 (33%), Positives = 46/118 (38%), Gaps = 27/118 (22%)
Query: 103 IYDGPRDMPPQPYKIYEVCSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTED 162
I+ P P P + PAPT+ +P G E LP L
Sbjct: 397 IHSAPGPRRPAPALLAPPTFIFPAPTNGEPMRPGPPGLQE-----------LPPL----- 440
Query: 163 VKWPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPA 220
PP PPTLQPP + P P P+APP G +E L P PA LPPA
Sbjct: 441 ---PPPTPPPTLQPPAL----QPTPLPVAPPLTPGLGHKE---SALAPTAAPA-LPPA 487
Score = 33.5 bits (75), Expect = 0.45
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 21/146 (14%)
Query: 155 PSLSLTEDVKWPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLP 214
P L + + + P+ P TL+ P + PP + + ++ PP PAG L PGP
Sbjct: 58 PGLMVPREPQASPSTLPLTLERPSPVMPPPEEAAAVSAPPPAPAG-------TLLPGPSK 110
Query: 215 ASLPPAGEQLLPDLLISPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQE 274
PAG + P + L LE + +G PP + P R ++ T
Sbjct: 111 WQ-KPAGTPV-------PRIRRL--LEASHRGQGDPPSLRPLKPPPPPRQL--SVKDTVP 158
Query: 275 QVELFGPISLEQVRFPSPEDIPSDKQ 300
+ P LE + P P +PS++Q
Sbjct: 159 RAPSQFPPPLETWKPPPP--LPSERQ 182
Score = 32.0 bits (71), Expect = 1.3
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 13/129 (10%)
Query: 102 LIYDGPRDMPPQPYKIYEVCSNGPAPTDS--QPPEDYSFGAGEEEEEEEELQRMLPSLSL 159
L + P + P P + V + PAP + P + AG ++R+L +
Sbjct: 75 LTLERPSPVMPPPEEAAAVSAPPPAPAGTLLPGPSKWQKPAGTPVPR---IRRLLEASHR 131
Query: 160 TEDVKWPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPP 219
+ PP+L+P L+PP PP S P P+ F L P PLP+ P
Sbjct: 132 GQGD--PPSLRP--LKPP----PPPRQLSVKDTVPRAPSQFPPPLETWKPPPPLPSERQP 183
Query: 220 AGEQLLPDL 228
A ++ P L
Sbjct: 184 ADRRITPAL 192
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.138 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,585,267
Number of Sequences: 37866
Number of extensions: 1658109
Number of successful extensions: 16161
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 617
Number of HSP's that attempted gapping in prelim test: 10763
Number of HSP's gapped (non-prelim): 3765
length of query: 488
length of database: 18,247,518
effective HSP length: 106
effective length of query: 382
effective length of database: 14,233,722
effective search space: 5437281804
effective search space used: 5437281804
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.