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Search of human proteins with 148762945
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148762945 zinc finger CCCH-type containing 12D [Homo
sapiens]
(321 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148762945 zinc finger CCCH-type containing 12D [Homo sapiens] 671 0.0
gi|148746187 zinc finger CCCH-type containing 12B [Homo sapiens] 370 e-103
gi|148886668 zinc finger CCCH-type containing 12C [Homo sapiens] 363 e-100
gi|156151383 zinc finger CCCH-type containing 12A [Homo sapiens] 362 e-100
gi|54792090 hypothetical protein LOC23351 [Homo sapiens] 173 2e-43
gi|48928019 Nedd4 binding protein 1 [Homo sapiens] 162 5e-40
gi|126723547 hypothetical protein LOC57523 [Homo sapiens] 143 2e-34
gi|239047795 pleckstrin homology domain containing, family A mem... 32 0.58
gi|7019419 guanine nucleotide binding protein-like 2 (nucleolar)... 31 1.3
gi|239757729 PREDICTED: hypothetical protein [Homo sapiens] 31 1.3
gi|239752222 PREDICTED: hypothetical protein [Homo sapiens] 31 1.3
gi|239746743 PREDICTED: hypothetical protein [Homo sapiens] 31 1.3
gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo... 30 2.9
gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo ... 30 2.9
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 30 2.9
gi|239748695 PREDICTED: hypothetical protein [Homo sapiens] 30 2.9
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 30 2.9
gi|239742718 PREDICTED: hypothetical protein XP_002342622 [Homo ... 30 2.9
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 30 2.9
gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens] 30 2.9
gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens] 30 2.9
gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens] 30 2.9
gi|149274614 melanoma antigen family D, 4 [Homo sapiens] 30 2.9
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 30 2.9
gi|40806170 spastin isoform 2 [Homo sapiens] 30 3.7
gi|11875211 spastin isoform 1 [Homo sapiens] 30 3.7
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 30 3.7
gi|24307963 zinc finger, DHHC-type containing 1 [Homo sapiens] 29 4.9
gi|156151420 hexokinase domain containing 1 [Homo sapiens] 29 4.9
gi|156416026 zinc finger protein 219 [Homo sapiens] 29 4.9
>gi|148762945 zinc finger CCCH-type containing 12D [Homo sapiens]
Length = 321
Score = 671 bits (1732), Expect = 0.0
Identities = 321/321 (100%), Positives = 321/321 (100%)
Query: 1 MEHPSKMEFFQKLGYDREDVLRVLGKLGEGALVNDVLQELIRTGSRPGALEHLAAPRLVP 60
MEHPSKMEFFQKLGYDREDVLRVLGKLGEGALVNDVLQELIRTGSRPGALEHLAAPRLVP
Sbjct: 1 MEHPSKMEFFQKLGYDREDVLRVLGKLGEGALVNDVLQELIRTGSRPGALEHLAAPRLVP 60
Query: 61 RGSCGVPDSAQRGPGTALEEDFRTLASSLRPIVIDGSNVAMSHGNKETFSCRGIKLAVDW 120
RGSCGVPDSAQRGPGTALEEDFRTLASSLRPIVIDGSNVAMSHGNKETFSCRGIKLAVDW
Sbjct: 61 RGSCGVPDSAQRGPGTALEEDFRTLASSLRPIVIDGSNVAMSHGNKETFSCRGIKLAVDW 120
Query: 121 FRDRGHTYIKVFVPSWRKDSPRADTPIREQHVLAELERQAVLVYTPSRKVHGKRLVCYDD 180
FRDRGHTYIKVFVPSWRKDSPRADTPIREQHVLAELERQAVLVYTPSRKVHGKRLVCYDD
Sbjct: 121 FRDRGHTYIKVFVPSWRKDSPRADTPIREQHVLAELERQAVLVYTPSRKVHGKRLVCYDD 180
Query: 181 RYIVKVAYEQDGVIVSNDNYRDLQSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGP 240
RYIVKVAYEQDGVIVSNDNYRDLQSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGP
Sbjct: 181 RYIVKVAYEQDGVIVSNDNYRDLQSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGP 240
Query: 241 SLSNFLSRKPKPPEPSWQHCPYGKKCTYGIKCKFYHPERPHHAQLAVADELRAKTGARPV 300
SLSNFLSRKPKPPEPSWQHCPYGKKCTYGIKCKFYHPERPHHAQLAVADELRAKTGARPV
Sbjct: 241 SLSNFLSRKPKPPEPSWQHCPYGKKCTYGIKCKFYHPERPHHAQLAVADELRAKTGARPV 300
Query: 301 LPGRPPASARPAAPAAGRTPP 321
LPGRPPASARPAAPAAGRTPP
Sbjct: 301 LPGRPPASARPAAPAAGRTPP 321
>gi|148746187 zinc finger CCCH-type containing 12B [Homo sapiens]
Length = 825
Score = 370 bits (950), Expect = e-103
Identities = 179/292 (61%), Positives = 223/292 (76%), Gaps = 6/292 (2%)
Query: 2 EHPSKMEFFQKLGYDREDVLRVLGKLGEGALVNDVLQELIRTGSRPGALEHLAAPRLVPR 61
E+ +KMEF KLGY E + VL KLG +L+NDVL EL+R G++ + + LVPR
Sbjct: 96 EYQAKMEFALKLGYAEEQIQSVLNKLGPESLINDVLAELVRLGNKGDSEGQINLSLLVPR 155
Query: 62 GSCGVPDSAQ-RGPGTALEEDFRTLASSLRPIVIDGSNVAMSHGNKETFSCRGIKLAVDW 120
G P S + P +LE++ + +LRP+VIDGSNVAMSHGNKE FSCRGI+LAVDW
Sbjct: 156 G----PSSREIASPELSLEDEIDN-SDNLRPVVIDGSNVAMSHGNKEEFSCRGIQLAVDW 210
Query: 121 FRDRGHTYIKVFVPSWRKDSPRADTPIREQHVLAELERQAVLVYTPSRKVHGKRLVCYDD 180
F D+GH I VFVP+WRK+ R D PI +Q +L +LE++ +LV+TPSR+V G+R+VCYDD
Sbjct: 211 FLDKGHKDITVFVPAWRKEQSRPDAPITDQDILRKLEKEKILVFTPSRRVQGRRVVCYDD 270
Query: 181 RYIVKVAYEQDGVIVSNDNYRDLQSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGP 240
R+IVK+A++ DG+IVSNDNYRDLQ E PEWK FIE+RLLM+SFVND+FMPPDDPLGRHGP
Sbjct: 271 RFIVKLAFDSDGIIVSNDNYRDLQVEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGP 330
Query: 241 SLSNFLSRKPKPPEPSWQHCPYGKKCTYGIKCKFYHPERPHHAQLAVADELR 292
SL NFL ++P PE Q CPYGKKCTYG KCK+YHPER + Q +VADELR
Sbjct: 331 SLENFLRKRPIVPEHKKQPCPYGKKCTYGHKCKYYHPERANQPQRSVADELR 382
>gi|148886668 zinc finger CCCH-type containing 12C [Homo sapiens]
Length = 883
Score = 363 bits (932), Expect = e-100
Identities = 174/292 (59%), Positives = 217/292 (74%), Gaps = 3/292 (1%)
Query: 2 EHPSKMEFFQKLGYDREDVLRVLGKLGEGALVNDVLQELIRTGSRPGALEHLAAPRLVPR 61
E+ +K+EF KLGY E V VL KLG AL+ND+L EL++ G++ A + ++ + R
Sbjct: 161 EYQTKLEFALKLGYSEEQVQLVLNKLGTDALINDILGELVKLGNKSEADQTVSTINTITR 220
Query: 62 GSCGVPDSAQRGPGTALEEDFRTLASSLRPIVIDGSNVAMSHGNKETFSCRGIKLAVDWF 121
+ + P ++E +LRPIVIDGSNVAMSHGNKE FSCRGIKLAVDWF
Sbjct: 221 ETSSLESQRSESP---MQEIVTDDGENLRPIVIDGSNVAMSHGNKEVFSCRGIKLAVDWF 277
Query: 122 RDRGHTYIKVFVPSWRKDSPRADTPIREQHVLAELERQAVLVYTPSRKVHGKRLVCYDDR 181
+RGH I VFVP+WRK+ R D I +Q +L +LE++ +LV+TPSR+V G+R+VCYDDR
Sbjct: 278 LERGHKDITVFVPAWRKEQSRPDALITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDR 337
Query: 182 YIVKVAYEQDGVIVSNDNYRDLQSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGPS 241
+IVK+A+E DG+IVSNDNYRDL +E PEWK FI++RLLM+SFVND+FMPPDDPLGRHGPS
Sbjct: 338 FIVKLAFESDGIIVSNDNYRDLANEKPEWKKFIDERLLMYSFVNDKFMPPDDPLGRHGPS 397
Query: 242 LSNFLSRKPKPPEPSWQHCPYGKKCTYGIKCKFYHPERPHHAQLAVADELRA 293
L NFL +KP PE Q CPYGKKCTYG KCK+YHPER Q +VADELRA
Sbjct: 398 LDNFLRKKPIVPEHKKQPCPYGKKCTYGHKCKYYHPERGSQPQRSVADELRA 449
>gi|156151383 zinc finger CCCH-type containing 12A [Homo sapiens]
Length = 599
Score = 362 bits (929), Expect = e-100
Identities = 186/318 (58%), Positives = 225/318 (70%), Gaps = 10/318 (3%)
Query: 1 MEHPSKMEFFQKLGYDREDVLRVLGKLGEGALVNDVLQELIRTGS-----RPGALEHLAA 55
+E K++FF+KLGY ++ VL KLG A N VL EL++ G+ R + +
Sbjct: 46 LELQMKVDFFRKLGYSSTEIHSVLQKLGVQADTNTVLGELVKHGTATERERQTSPDPCPQ 105
Query: 56 PRLVPRGSCGVPDSAQRGPGTALEEDFRTLASSLRPIVIDGSNVAMSHGNKETFSCRGIK 115
LVPRG G P + P EE S LRP+VIDGSNVAMSHGNKE FSCRGI
Sbjct: 106 LPLVPRGG-GTPKAPNLEPPLPEEEKE---GSDLRPVVIDGSNVAMSHGNKEVFSCRGIL 161
Query: 116 LAVDWFRDRGHTYIKVFVPSWRKDSPRADTPIREQHVLAELERQAVLVYTPSRKVHGKRL 175
LAV+WF +RGHT I VFVPSWRK+ PR D PI +QH+L ELE++ +LV+TPSR+V GKR+
Sbjct: 162 LAVNWFLERGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFTPSRRVGGKRV 221
Query: 176 VCYDDRYIVKVAYEQDGVIVSNDNYRDLQSENPEWKWFIEQRLLMFSFVNDRFMPPDDPL 235
VCYDDR+IVK+AYE DG++VSND YRDLQ E EWK FIE+RLLM+SFVND+FMPPDDPL
Sbjct: 222 VCYDDRFIVKLAYESDGIVVSNDTYRDLQGERQEWKRFIEERLLMYSFVNDKFMPPDDPL 281
Query: 236 GRHGPSLSNFLSRKPKPPEPSWQHCPYGKKCTYGIKCKFYHPERPHHAQLAVADELRAKT 295
GRHGPSL NFL +KP E Q CPYG+KCTYGIKC+F+HPERP Q +VADELRA
Sbjct: 282 GRHGPSLDNFLRKKPLTLEHRKQPCPYGRKCTYGIKCRFFHPERPSCPQRSVADELRANA 341
Query: 296 -GARPVLPGRPPASARPA 312
+ P P + RP+
Sbjct: 342 LLSPPRAPSKDKNGRRPS 359
>gi|54792090 hypothetical protein LOC23351 [Homo sapiens]
Length = 678
Score = 173 bits (439), Expect = 2e-43
Identities = 93/183 (50%), Positives = 117/183 (63%), Gaps = 9/183 (4%)
Query: 89 LRPIVIDGSNVAMSHGNKETFSCRGIKLAVDWFRDRGHTYIKVFVPSWRKDSPRADTPIR 148
LR IVIDGSNVAM HG + FS RGI +AV +F DRGH I VFVP WR D +R
Sbjct: 437 LRHIVIDGSNVAMVHGLQHYFSSRGIAIAVQYFWDRGHRDITVFVPQWRFSK---DAKVR 493
Query: 149 EQHVLAELERQAVLVYTPSRKVHGKRLVCYDDRYIVKVAYEQDGVIVSNDNYRDLQSENP 208
E H L +L ++L TPSR + GKR+ YDDR++VK+A E DG+IVSND +RDL E+
Sbjct: 494 ESHFLQKLYSLSLLSLTPSRVMDGKRISSYDDRFMVKLAEETDGIIVSNDQFRDLAEESE 553
Query: 209 EWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGPSLSNFLSR------KPKPPEPSWQHCPY 262
+W I +RLL F+FV + FM PDDPLGR+GP+L FL + K PS +
Sbjct: 554 KWMAIIRERLLPFTFVGNLFMVPDDPLGRNGPTLDEFLKKPARTQGSSKAQHPSRGFAEH 613
Query: 263 GKK 265
GK+
Sbjct: 614 GKQ 616
>gi|48928019 Nedd4 binding protein 1 [Homo sapiens]
Length = 896
Score = 162 bits (409), Expect = 5e-40
Identities = 78/163 (47%), Positives = 112/163 (68%), Gaps = 3/163 (1%)
Query: 87 SSLRPIVIDGSNVAMSHGNKETFSCRGIKLAVDWFRDRGHTYIKVFVPSWRKDSPRADTP 146
+ L+ IVIDGSNVA++HG K+ FSCRGI +AV++F G+ I VFVP WR R D
Sbjct: 615 TDLKHIVIDGSNVAITHGLKKFFSCRGIAIAVEYFWKLGNRNITVFVPQWRT---RRDPN 671
Query: 147 IREQHVLAELERQAVLVYTPSRKVHGKRLVCYDDRYIVKVAYEQDGVIVSNDNYRDLQSE 206
+ EQH L +L+ +L TP+R V G+R+ +DDR+++ +A + G+IV+NDN+R+ +E
Sbjct: 672 VTEQHFLTQLQELGILSLTPARMVFGERIASHDDRFLLHLADKTGGIIVTNDNFREFVNE 731
Query: 207 NPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGPSLSNFLSRK 249
+ W+ I +RLL ++FV D FM PDDPLGR GP L FL ++
Sbjct: 732 SVSWREIITKRLLQYTFVGDIFMVPDDPLGRSGPRLEEFLQKE 774
>gi|126723547 hypothetical protein LOC57523 [Homo sapiens]
Length = 1898
Score = 143 bits (361), Expect = 2e-34
Identities = 75/160 (46%), Positives = 103/160 (64%), Gaps = 5/160 (3%)
Query: 89 LRPIVIDGSNVAMSHGNKETFSCRGIKLAVDWFRDRGHTYIKVFVPSWRKDSPRADTPIR 148
LR +VIDGS+VAM HG + FSCRGI +AV +F +RGH + VFVP+W+ R +R
Sbjct: 792 LRRVVIDGSSVAMVHGLQHFFSCRGIAMAVQFFWNRGHREVTVFVPTWQLKKNRR---VR 848
Query: 149 EQHVLAELERQAVLVYTPSRKVHGKRLVCYDDRYIVKVAYEQDGVIVSNDNYRDLQSENP 208
E H L +L +L TPS+ +GK++ YD R++VK+A E DG+IV+N+ L N
Sbjct: 849 ESHFLTKLHSLKMLSITPSQLENGKKITTYDYRFMVKLAEETDGIIVTNEQIHILM--NS 906
Query: 209 EWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGPSLSNFLSR 248
K ++ RLL F+F + FM PDDPLGR GP+L FL +
Sbjct: 907 SKKLMVKDRLLPFTFAGNLFMVPDDPLGRDGPTLDEFLKK 946
>gi|239047795 pleckstrin homology domain containing, family A member
7 [Homo sapiens]
Length = 1121
Score = 32.3 bits (72), Expect = 0.58
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 234 PLGRHGPSLSNFLSRKPKPPEPSWQHCPYGKKCTYGI--KCKFYHPERPHHAQL-AVADE 290
PL H P S S PP+PS P + + + Y P RPH QL V
Sbjct: 845 PLFPHPPVPSLSTSESKPPPQPSPPTSPVRTPLEVRLFPQLQTYVPYRPHPPQLRKVTSP 904
Query: 291 LRAKTGARPVL----PGRPP 306
L++ T A+P + P RPP
Sbjct: 905 LQSPTKAKPKVEDEAPPRPP 924
>gi|7019419 guanine nucleotide binding protein-like 2 (nucleolar)
[Homo sapiens]
Length = 731
Score = 31.2 bits (69), Expect = 1.3
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 8 EFFQKLGYDR-------EDVLRVLGKLGEGALVNDVLQELIRTGSRPGALEHLAAPRLVP 60
+F +KL + E L+ +GK+ ++ND + I +P E L AP+L+P
Sbjct: 420 DFLEKLAFRTGKLLKGGEPDLQTVGKM----VLNDWQRGRIPFFVKPPNAEPLVAPQLLP 475
Query: 61 RGSCG-VPDSAQRGPGTALEE 80
S VP++AQ PG + E
Sbjct: 476 SSSLEVVPEAAQNNPGEEVTE 496
>gi|239757729 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 31.2 bits (69), Expect = 1.3
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 17/83 (20%)
Query: 250 PKPPEPSWQHCPYGKKCTYGIK------------CKFYHPERPHHAQLAVADELRAKTGA 297
P PP Q P+G +C++G K + P +P +L AK A
Sbjct: 104 PPPPTGEKQPRPHGFRCSHGSKRAPALLGAPARRPPAHIPAQPRWPRLQPV----AKRRA 159
Query: 298 RPVLPGRPPASARPAAPAAGRTP 320
RPV PG P A + AA GR P
Sbjct: 160 RPVPPGLPGA-PKQAALTPGRRP 181
>gi|239752222 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 31.2 bits (69), Expect = 1.3
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 17/83 (20%)
Query: 250 PKPPEPSWQHCPYGKKCTYGIK------------CKFYHPERPHHAQLAVADELRAKTGA 297
P PP Q P+G +C++G K + P +P +L AK A
Sbjct: 104 PPPPTGEKQPRPHGFRCSHGSKRAPALLGAPARRPPAHIPAQPRWPRLQPV----AKRRA 159
Query: 298 RPVLPGRPPASARPAAPAAGRTP 320
RPV PG P A + AA GR P
Sbjct: 160 RPVPPGLPGA-PKQAALTPGRRP 181
>gi|239746743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 31.2 bits (69), Expect = 1.3
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 17/83 (20%)
Query: 250 PKPPEPSWQHCPYGKKCTYGIK------------CKFYHPERPHHAQLAVADELRAKTGA 297
P PP Q P+G +C++G K + P +P +L AK A
Sbjct: 104 PPPPTGEKQPRPHGFRCSHGSKRAPALLGAPARRPPAHIPAQPRWPRLQPV----AKRRA 159
Query: 298 RPVLPGRPPASARPAAPAAGRTP 320
RPV PG P A + AA GR P
Sbjct: 160 RPVPPGLPGA-PKQAALTPGRRP 181
>gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo
sapiens]
Length = 735
Score = 30.0 bits (66), Expect = 2.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 232 DDPLGRHGPSLSNFLSRKPKPPEPSWQHCPYGKKCTYGIKCKFYHPERP 280
+DP G + + LS KP E + C Y C G +C ++HP P
Sbjct: 574 EDPNGSFSNAEMSELSVAQKP-EKLLERCKYWPACKNGDECAYHHPISP 621
>gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo
sapiens]
Length = 736
Score = 30.0 bits (66), Expect = 2.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 232 DDPLGRHGPSLSNFLSRKPKPPEPSWQHCPYGKKCTYGIKCKFYHPERP 280
+DP G + + LS KP E + C Y C G +C ++HP P
Sbjct: 574 EDPNGSFSNAEMSELSVAQKP-EKLLERCKYWPACKNGDECAYHHPISP 621
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 30.0 bits (66), Expect = 2.9
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 236 GRHGPSLSNFLSRKPKPPEPSWQHCPYGKKCTYGIKCKFYHPERPHHAQLAVADELRAKT 295
G PS + L + +PP + +K + P+RP Q + +
Sbjct: 55 GPRAPSPAPALPARARPPREN-------RKRAVPARAARGPPKRPAGGQTGGVEAASGEE 107
Query: 296 GARPVLPGRPPASARPAAPAAGR 318
++P P RPP + R PA GR
Sbjct: 108 RSQPRRPRRPPPAPRRPRPAPGR 130
>gi|239748695 PREDICTED: hypothetical protein [Homo sapiens]
Length = 101
Score = 30.0 bits (66), Expect = 2.9
Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 250 PKPPEPSWQHCPYGKKCTYGIKCKFYHPERPHHAQLAVADELRAKTGARPVLPGRPPASA 309
P P W+ CP G + P H A + +RA+ A+P P A+A
Sbjct: 4 PSRGRPGWRRCPCGPAAPTRRR-PLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAAA 62
Query: 310 R---PAAPAAGRTPP 321
P P PP
Sbjct: 63 AAVCPPPPRGALRPP 77
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 30.0 bits (66), Expect = 2.9
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 236 GRHGPSLSNFLSRKPKPPEPSWQHCPYGKKCTYGIKCKFYHPERPHHAQLAVADELRAKT 295
G PS + L + +PP + +K + P+RP Q + +
Sbjct: 55 GPRAPSPAPALPARARPPREN-------RKRAVPARAARGPPKRPAGGQTGGVEAASGEE 107
Query: 296 GARPVLPGRPPASARPAAPAAGR 318
++P P RPP + R PA GR
Sbjct: 108 RSQPRRPRRPPPAPRRPRPAPGR 130
>gi|239742718 PREDICTED: hypothetical protein XP_002342622 [Homo
sapiens]
Length = 101
Score = 30.0 bits (66), Expect = 2.9
Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 250 PKPPEPSWQHCPYGKKCTYGIKCKFYHPERPHHAQLAVADELRAKTGARPVLPGRPPASA 309
P P W+ CP G + P H A + +RA+ A+P P A+A
Sbjct: 4 PSRGRPGWRRCPCGPAAPTRRR-PLLPPPASHAAMCVRSGAVRARVRAQPAGQSEPSAAA 62
Query: 310 R---PAAPAAGRTPP 321
P P PP
Sbjct: 63 AAVCPPPPRGALRPP 77
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 30.0 bits (66), Expect = 2.9
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 236 GRHGPSLSNFLSRKPKPPEPSWQHCPYGKKCTYGIKCKFYHPERPHHAQLAVADELRAKT 295
G PS + L + +PP + +K + P+RP Q + +
Sbjct: 55 GPRAPSPAPALPARARPPREN-------RKRAVPARAARGPPKRPAGGQTGGVEAASGEE 107
Query: 296 GARPVLPGRPPASARPAAPAAGR 318
++P P RPP + R PA GR
Sbjct: 108 RSQPRRPRRPPPAPRRPRPAPGR 130
>gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens]
Length = 739
Score = 30.0 bits (66), Expect = 2.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 274 FYHPERPHHAQLAVADELRAKTGARPVLPGRPPASARPAAPAAGR 318
F P+RP AQ A + A +G PGR A+ RP +G+
Sbjct: 249 FPRPKRPAPAQEAATEGPSAASGVPQTGPGREVAATRPKTTKSGK 293
>gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
Length = 741
Score = 30.0 bits (66), Expect = 2.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 274 FYHPERPHHAQLAVADELRAKTGARPVLPGRPPASARPAAPAAGR 318
F P+RP AQ A + A +G PGR A+ RP +G+
Sbjct: 249 FPRPKRPAPAQEAATEGPSAASGVPQTGPGREVAATRPKTTKSGK 293
>gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
Length = 741
Score = 30.0 bits (66), Expect = 2.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 274 FYHPERPHHAQLAVADELRAKTGARPVLPGRPPASARPAAPAAGR 318
F P+RP AQ A + A +G PGR A+ RP +G+
Sbjct: 249 FPRPKRPAPAQEAATEGPSAASGVPQTGPGREVAATRPKTTKSGK 293
>gi|149274614 melanoma antigen family D, 4 [Homo sapiens]
Length = 739
Score = 30.0 bits (66), Expect = 2.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 274 FYHPERPHHAQLAVADELRAKTGARPVLPGRPPASARPAAPAAGR 318
F P+RP AQ A + A +G PGR A+ RP +G+
Sbjct: 249 FPRPKRPAPAQEAATEGPSAASGVPQTGPGREVAATRPKTTKSGK 293
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 30.0 bits (66), Expect = 2.9
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 14/67 (20%)
Query: 253 PEPSWQHCPYGKKCTYGIKCKFYHP---ERPHHAQLAVADELRAKTGARPVLP-GRPPAS 308
P P+ + G CT+G+ C+F HP ++ +++ + AD P P G PP
Sbjct: 220 PRPTCRFFMKGN-CTWGMNCRFIHPGVNDKGNYSLITKAD---------PFPPNGAPPLG 269
Query: 309 ARPAAPA 315
P PA
Sbjct: 270 PHPLMPA 276
>gi|40806170 spastin isoform 2 [Homo sapiens]
Length = 584
Score = 29.6 bits (65), Expect = 3.7
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 297 ARPVLPGRPPASARPAAPAAGRTPP 321
+ PV P PP PA PAAG PP
Sbjct: 17 SNPVPPRPPPPCLAPAPPAAGPAPP 41
>gi|11875211 spastin isoform 1 [Homo sapiens]
Length = 616
Score = 29.6 bits (65), Expect = 3.7
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 297 ARPVLPGRPPASARPAAPAAGRTPP 321
+ PV P PP PA PAAG PP
Sbjct: 17 SNPVPPRPPPPCLAPAPPAAGPAPP 41
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 29.6 bits (65), Expect = 3.7
Identities = 26/96 (27%), Positives = 30/96 (31%), Gaps = 6/96 (6%)
Query: 230 PPDDPLGRHGPSLSNFLSRKPKPPEPSWQHCPYGK----KCTYGIKCKFYHPERPHHAQL 285
PP P G + + P P P P + P P AQ
Sbjct: 108 PPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQP 167
Query: 286 AVADELRAKTGARPVLPGRPPASARPAAPAAGRTPP 321
+ A A P P PPA A PA P R PP
Sbjct: 168 GPRAQRAAPLAAPPPAPAAPPAVAPPAGPR--RAPP 201
>gi|24307963 zinc finger, DHHC-type containing 1 [Homo sapiens]
Length = 485
Score = 29.3 bits (64), Expect = 4.9
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 200 YRDLQSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGPSLSNFLSRKPKPPEPS 256
+R+L+S P+ + E M +F R M P+ P G+ GP+ N +P P+P+
Sbjct: 295 HRELESCPPKMRPIQEMEFYMRTF---RHMRPEPP-GQAGPAAVNAKHSRPASPDPT 347
>gi|156151420 hexokinase domain containing 1 [Homo sapiens]
Length = 917
Score = 29.3 bits (64), Expect = 4.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 53 LAAPRLVPRGSCGVPDSAQRGPGTALE---EDFRTLASSLR 90
LA R++P CG+PD ++G AL+ +FR L +R
Sbjct: 506 LATVRMLPTYVCGLPDGTEKGKFLALDLGGTNFRVLLVKIR 546
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 29.3 bits (64), Expect = 4.9
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 13/63 (20%)
Query: 259 HCPYGKKCTYGIKCKFYHPERPHHAQLAVADELRAKTGARPVLPGRPPA-SARPAAPAAG 317
HC Y + +K YH +R H Q ++GA P P PP S R +AP +G
Sbjct: 530 HCDYAGTQSGSLK---YHLQRHHREQ---------RSGAGPGPPPEPPPPSQRGSAPQSG 577
Query: 318 RTP 320
P
Sbjct: 578 AKP 580
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,055,960
Number of Sequences: 37866
Number of extensions: 787692
Number of successful extensions: 3251
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3203
Number of HSP's gapped (non-prelim): 47
length of query: 321
length of database: 18,247,518
effective HSP length: 102
effective length of query: 219
effective length of database: 14,385,186
effective search space: 3150355734
effective search space used: 3150355734
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.