Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MAGED4B Sequence: fasta or formatted (739aa) NCBI GI: 29337296
Description:

melanoma antigen family D, 4B isoform 2

Referenced in:

Melanoma Antigen Family
Small RNAs in RNA Processing

Other entries for this name:
alt prot [741aa] melanoma antigen family D, 4B isoform 1
alt prot [741aa] melanoma antigen family D, 4B isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.9        103           6
 C cysteine            0.5          4           1
 D aspartate           4.7         35           2
 E glutamate           8.0         59           3
 F phenylalanine       3.4         25           2
 G glycine             6.0         44           2
 H histidine           1.8         13           1
 I isoleucine          3.5         26           2
 K lysine              4.6         34           2
 L leucine             7.0         52           3
 M methionine          2.4         18           1
 N asparagine          3.1         23           1
 P proline             7.0         52           2
 Q glutamine           4.2         31           1
 R arginine            7.3         54           2
 S serine              7.2         53           2
 T threonine           6.2         46           2
 V valine              5.1         38           2
 W tryptophan          1.9         14           1
 Y tyrosine            2.0         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   melanoma antigen family D, 4B isoform 2 
MAGED4B               1.000   melanoma antigen family D, 4B isoform 1 
MAGED4B               1.000   melanoma antigen family D, 4B isoform 1 
MAGED4                1.000   melanoma antigen family D, 4 
MAGED1                0.294   melanoma antigen family D, 1 isoform a 
MAGED1                0.294   melanoma antigen family D, 1 isoform b 
MAGED1                0.294   melanoma antigen family D, 1 isoform b 
TRO                   0.273   trophinin isoform 5 
TRO                   0.232   trophinin isoform 2 
TRO                   0.232   trophinin isoform 2 
MAGED2                0.224   melanoma antigen family D, 2 
MAGED2                0.224   melanoma antigen family D, 2 
MAGED2                0.224   melanoma antigen family D, 2 
NDNL2                 0.121   necdin-like 2 
MAGEL2                0.112   MAGE-like protein 2 
MAGEF1                0.107   melanoma antigen family F, 1 
MAGEB10               0.105   melanoma antigen family B, 10 
MAGEE1                0.102   melanoma antigen family E, 1 
MAGEB4                0.102   melanoma antigen family B, 4 
MAGEB3                0.101   melanoma antigen family B, 3 
MAGEB17               0.101   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.101   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.101   PREDICTED: melanoma antigen family B, 17 
MAGEB16               0.101   melanoma antigen family B, 16 
MAGEA10               0.096   melanoma antigen family A, 10 
MAGEA10               0.096   melanoma antigen family A, 10 
MAGEB1                0.096   melanoma antigen family B, 1 
MAGEB1                0.096   melanoma antigen family B, 1 
MAGEB1                0.096   melanoma antigen family B, 1 
MAGEB18               0.096   melanoma antigen family B, 18 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press