Guide to the Human Genome
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Name: ZC3H12D Sequence: fasta or formatted (321aa) NCBI GI: 148762945
Description:

zinc finger CCCH-type containing 12D

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         24           2
 C cysteine            1.9          6           1
 D aspartate           5.9         19           2
 E glutamate           5.9         19           2
 F phenylalanine       3.7         12           2
 G glycine             7.2         23           1
 H histidine           3.4         11           2
 I isoleucine          3.1         10           1
 K lysine              5.6         18           2
 L leucine             8.4         27           2
 M methionine          1.6          5           1
 N asparagine          2.5          8           1
 P proline             9.7         31           2
 Q glutamine           3.1         10           1
 R arginine            9.3         30           1
 S serine              6.2         20           2
 T threonine           3.1         10           1
 V valine              7.2         23           1
 W tryptophan          1.6          5           1
 Y tyrosine            3.1         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger CCCH-type containing 12D 
ZC3H12B               0.534   zinc finger CCCH-type containing 12B 
ZC3H12C               0.523   zinc finger CCCH-type containing 12C 
ZC3H12A               0.522   zinc finger CCCH-type containing 12A 
KIAA0323              0.229   hypothetical protein LOC23351 
N4BP1                 0.212   Nedd4 binding protein 1 
KIAA1305              0.183   hypothetical protein LOC57523 
PLEKHA7               0.011   pleckstrin homology domain containing, family A mem...
GNL2                  0.009   guanine nucleotide binding protein-like 2 (nucleolar)...
LOC388906             0.009   PREDICTED: hypothetical protein 
LOC388906             0.009   PREDICTED: hypothetical protein 
LOC388906             0.009   PREDICTED: hypothetical protein 
ZC3H14                0.008   zinc finger CCCH-type containing 14 isoform 5 [Homo...
ZC3H14                0.008   zinc finger CCCH-type containing 14 isoform 1 
LOC100131455          0.008   PREDICTED: hypothetical protein 
LOC100289231          0.008   PREDICTED: hypothetical protein 
LOC100131455          0.008   PREDICTED: hypothetical protein 
LOC100289231          0.008   PREDICTED: hypothetical protein XP_002342622 
LOC100131455          0.008   PREDICTED: hypothetical protein 
MAGED4B               0.008   melanoma antigen family D, 4B isoform 2 
MAGED4B               0.008   melanoma antigen family D, 4B isoform 1 
MAGED4B               0.008   melanoma antigen family D, 4B isoform 1 
MAGED4                0.008   melanoma antigen family D, 4 
ZC3H18                0.008   zinc finger CCCH-type containing 18 
SPAST                 0.008   spastin isoform 2 
SPAST                 0.008   spastin isoform 1 
SAMD1                 0.008   sterile alpha motif domain containing 1 
ZDHHC1                0.006   zinc finger, DHHC-type containing 1 
HKDC1                 0.006   hexokinase domain containing 1 
ZNF219                0.006   zinc finger protein 219 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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