Guide to the Human Genome
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Name: LOC100290807 Sequence: fasta or formatted (99aa) NCBI GI: 239752195
Description:

PREDICTED: hypothetical protein XP_002348131

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1          9           1
 C cysteine            3.0          3           1
 D aspartate           5.1          5           2
 E glutamate           4.0          4           1
 F phenylalanine       2.0          2           1
 G glycine            17.2         17           4
 H histidine           2.0          2           1
 I isoleucine          3.0          3           1
 K lysine              1.0          1           1
 L leucine            17.2         17           2
 M methionine          3.0          3           1
 N asparagine          1.0          1           1
 P proline             5.1          5           1
 Q glutamine           7.1          7           1
 R arginine            4.0          4           1
 S serine              5.1          5           1
 T threonine           4.0          4           1
 V valine              6.1          6           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348131 
LOC100289664          1.000   PREDICTED: hypothetical protein XP_002343801 
LOC100293185          0.989   PREDICTED: hypothetical protein 
CBWD6                 0.028   COBW domain containing 6 
CBWD3                 0.028   COBW domain containing 3 
CBWD5                 0.028   COBW domain containing 5 
CBWD1                 0.023   COBW domain containing 1 isoform 3 
CBWD1                 0.023   COBW domain containing 1 isoform 2 
CBWD1                 0.023   COBW domain containing 1 isoform 1 
CBWD2                 0.017   COBW domain-containing protein 2 
SMARCC2               0.017   SWI/SNF-related matrix-associated actin-dependent r...
TNRC18                0.011   trinucleotide repeat containing 18 
SEMA6B                0.011   semaphorin 6B precursor 
XYLT1                 0.006   xylosyltransferase I 
SPATA5L1              0.006   spermatogenesis associated 5-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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