Guide to the Human Genome
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Name: C17orf75 Sequence: fasta or formatted (396aa) NCBI GI: 45505147
Description:

hypothetical protein LOC64149

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         21           2
 C cysteine            3.0         12           1
 D aspartate           4.3         17           2
 E glutamate          10.9         43           2
 F phenylalanine       5.3         21           1
 G glycine             6.6         26           2
 H histidine           1.8          7           1
 I isoleucine          3.5         14           1
 K lysine              5.8         23           1
 L leucine            11.4         45           2
 M methionine          2.8         11           1
 N asparagine          4.8         19           2
 P proline             3.8         15           2
 Q glutamine           4.0         16           2
 R arginine            4.8         19           2
 S serine              9.8         39           3
 T threonine           3.0         12           1
 V valine              5.6         22           2
 W tryptophan          0.5          2           1
 Y tyrosine            3.0         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC64149 
PAF1                  0.013   Paf1, RNA polymerase II associated factor, homolog [...
IL16                  0.009   interleukin 16 isoform 2 
SART1                 0.008   squamous cell carcinoma antigen recognized by T cell...
CBWD1                 0.008   COBW domain containing 1 isoform 3 
CBWD6                 0.008   COBW domain containing 6 
FOXI1                 0.008   forkhead box I1 isoform a 
CBWD3                 0.008   COBW domain containing 3 
CBWD1                 0.008   COBW domain containing 1 isoform 1 
CBWD5                 0.008   COBW domain containing 5 
KIF20A                0.006   kinesin family member 20A 
CTDP1                 0.006   CTD (carboxy-terminal domain, RNA polymerase II, pol...
CBWD2                 0.006   COBW domain-containing protein 2 
AATK                  0.006   apoptosis-associated tyrosine kinase 
MAP3K9                0.006   mitogen-activated protein kinase kinase kinase 9 [Ho...
C5orf45               0.006   hypothetical protein LOC51149 isoform 1 
ATG7                  0.006   APG7 autophagy 7-like isoform c 
ATG7                  0.006   APG7 autophagy 7-like isoform b 
ATG7                  0.006   APG7 autophagy 7-like isoform a 
SENP7                 0.006   sentrin/SUMO-specific protease 7 isoform 1 
FLJ32810              0.005   Rho-type GTPase-activating protein FLJ32810 
PPP1R15A              0.005   protein phosphatase 1, regulatory subunit 15A [Homo...
CHCHD3                0.005   coiled-coil-helix-coiled-coil-helix domain containing...
FIGNL1                0.005   fidgetin-like 1 
FIGNL1                0.005   fidgetin-like 1 
GBP6                  0.005   guanylate binding protein family, member 6 
C10orf12              0.005   hypothetical protein LOC26148 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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