Guide to the Human Genome
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Name: ANKLE2 Sequence: fasta or formatted (938aa) NCBI GI: 148664230
Description:

ankyrin repeat and LEM domain containing 2

Referenced in:

Ankyrin Family
Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         82           4
 C cysteine            1.6         15           1
 D aspartate           5.5         52           3
 E glutamate           8.1         76           3
 F phenylalanine       3.0         28           1
 G glycine             6.4         60           2
 H histidine           2.3         22           2
 I isoleucine          2.7         25           1
 K lysine              5.9         55           2
 L leucine             9.9         93           2
 M methionine          1.4         13           1
 N asparagine          3.5         33           2
 P proline             7.9         74           3
 Q glutamine           3.1         29           2
 R arginine            7.4         69           2
 S serine              8.6         81           2
 T threonine           4.5         42           2
 V valine              5.4         51           2
 W tryptophan          1.2         11           1
 Y tyrosine            2.9         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ankyrin repeat and LEM domain containing 2 
TMPO                  0.007   thymopoietin isoform gamma 
TMPO                  0.007   thymopoietin isoform beta 
TMPO                  0.007   thymopoietin isoform alpha 
ANK3                  0.007   ankyrin 3 isoform 1 
ANKS1B                0.006   cajalin 2 isoform a 
BARD1                 0.005   BRCA1 associated RING domain 1 
CASKIN2               0.005   cask-interacting protein 2 isoform a 
KRIT1                 0.005   krev interaction trapped 1 isoform 2 
TNKS2                 0.005   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
MYO16                 0.005   myosin heavy chain Myr 8 
PARD3B                0.005   par-3 partitioning defective 3 homolog B isoform c ...
PARD3B                0.005   par-3 partitioning defective 3 homolog B isoform b ...
KRIT1                 0.005   krev interaction trapped 1 isoform 1 
KRIT1                 0.005   krev interaction trapped 1 isoform 1 
KRIT1                 0.005   krev interaction trapped 1 isoform 1 
KRIT1                 0.005   krev interaction trapped 1 isoform 1 
CCDC22                0.005   coiled-coil domain containing 22 
CASKIN2               0.005   cask-interacting protein 2 isoform b 
TXLNB                 0.005   taxilin beta 
RANBP3                0.005   RAN binding protein 3 isoform RANBP3-a 
RANBP3                0.005   RAN binding protein 3 isoform RANBP3-d 
ZBTB47                0.005   zinc finger protein 651 
LEMD1                 0.004   LEM domain containing 1 
PTPRN                 0.004   protein tyrosine phosphatase, receptor type, N precur...
LOC286177             0.004   PREDICTED: hypothetical protein LOC286177 
ANK1                  0.004   ankyrin 1 isoform 9 
ANK1                  0.004   ankyrin 1 isoform 1 
ANK1                  0.004   ankyrin 1 isoform 3 
ANK1                  0.004   ankyrin 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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