Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC286177 Sequence: fasta or formatted (287aa) NCBI GI: 169173314
Description:

PREDICTED: hypothetical protein LOC286177

Not currently referenced in the text

Other entries for this name:
alt prot {282aa} PREDICTED: hypothetical protein LOC286177
alt prot {282aa} PREDICTED: hypothetical protein LOC286177
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         31           4
 C cysteine            2.4          7           1
 D aspartate           1.4          4           1
 E glutamate           5.6         16           2
 F phenylalanine       2.8          8           1
 G glycine            13.2         38           4
 H histidine           1.4          4           1
 I isoleucine          1.7          5           1
 K lysine              2.4          7           2
 L leucine            11.5         33           3
 M methionine          1.4          4           1
 N asparagine          1.7          5           1
 P proline             9.8         28           3
 Q glutamine           4.2         12           1
 R arginine            9.4         27           2
 S serine              5.6         16           2
 T threonine           3.1          9           1
 V valine              5.9         17           1
 W tryptophan          3.5         10           1
 Y tyrosine            2.1          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC286177 
LOC286177             0.870   PREDICTED: hypothetical protein LOC286177 
LOC286177             0.870   PREDICTED: hypothetical protein LOC286177 
ZNF828                0.021   zinc finger protein 828 
LOC100291900          0.017   PREDICTED: similar to hCG2006635, partial 
ANKLE2                0.014   ankyrin repeat and LEM domain containing 2 
FOXD1                 0.014   forkhead box D1 
DBP                   0.014   D site of albumin promoter (albumin D-box) binding p...
HERPUD1               0.014   homocysteine-inducible, endoplasmic reticulum stress...
HERPUD1               0.014   homocysteine-inducible, endoplasmic reticulum stress...
HERPUD1               0.014   homocysteine-inducible, endoplasmic reticulum stress-...
ZNF831                0.012   zinc finger protein 831 
LOC729204             0.012   PREDICTED: similar to hCG2045644 
BAT2                  0.012   HLA-B associated transcript-2 
SPOCD1                0.009   SPOC domain containing 1 
AGAP2                 0.009   centaurin, gamma 1 isoform PIKE-L 
LOC100291624          0.009   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.009   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.009   PREDICTED: hypothetical protein XP_002342583 
SF1                   0.009   splicing factor 1 isoform 2 
SF1                   0.009   splicing factor 1 isoform 1 
LOC100128511          0.007   PREDICTED: hypothetical protein 
LOC100128511          0.007   PREDICTED: hypothetical protein 
LOC100128511          0.007   PREDICTED: hypothetical protein 
CDC23                 0.007   cell division cycle protein 23 
LOC100292714          0.007   PREDICTED: hypothetical protein 
LOC100290875          0.007   PREDICTED: hypothetical protein XP_002346912 
LOC100287196          0.007   PREDICTED: hypothetical protein XP_002342759 
LOC100287196          0.007   PREDICTED: hypothetical protein 
ZKSCAN3               0.007   zinc finger with KRAB and SCAN domains 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press