Guide to the Human Genome
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Name: ANKIB1 Sequence: fasta or formatted (1089aa) NCBI GI: 148596953
Description:

ankyrin repeat and IBR domain containing 1

Referenced in:

Ankyrin Family
Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         80           3
 C cysteine            3.4         37           2
 D aspartate           7.0         76           2
 E glutamate           8.8         96           2
 F phenylalanine       2.9         32           2
 G glycine             5.3         58           2
 H histidine           2.8         30           2
 I isoleucine          3.6         39           2
 K lysine              5.1         55           2
 L leucine             9.6        105           2
 M methionine          2.5         27           1
 N asparagine          4.4         48           2
 P proline             6.3         69           3
 Q glutamine           4.1         45           2
 R arginine            5.5         60           3
 S serine              8.8         96           3
 T threonine           4.9         53           3
 V valine              3.8         41           2
 W tryptophan          1.5         16           1
 Y tyrosine            2.4         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ankyrin repeat and IBR domain containing 1 
ARIH2                 0.083   ariadne homolog 2 
ARIH1                 0.077   ariadne ubiquitin-conjugating enzyme E2 binding pro...
CUL9                  0.050   p53-associated parkin-like cytoplasmic protein [Homo...
RNF19A                0.032   ring finger protein 19 
RNF19A                0.032   ring finger protein 19 
RNF14                 0.031   ring finger protein 14 isoform 1 
RNF14                 0.031   ring finger protein 14 isoform 1 
RNF14                 0.031   ring finger protein 14 isoform 1 
RNF14                 0.031   ring finger protein 14 isoform 2 
RNF14                 0.031   ring finger protein 14 isoform 1 
RNF19B                0.031   ring finger protein 19B isoform b 
RNF19B                0.030   ring finger protein 19B isoform a 
RNF144A               0.025   ring finger protein 144 
RNF144B               0.024   IBR domain containing 2 
RNF217                0.018   ring finger protein 217 
PARK2                 0.018   parkin isoform 3 
PARK2                 0.018   parkin isoform 2 
PARK2                 0.018   parkin isoform 1 
ANKRD27               0.017   ankyrin repeat domain 27 (VPS9 domain) 
RBCK1                 0.013   RanBP-type and C3HC4-type zinc finger containing 1 is...
RBCK1                 0.013   RanBP-type and C3HC4-type zinc finger containing 1 ...
ASB16                 0.013   ankyrin repeat and SOCS box-containing protein 16 [H...
ANKRD12               0.012   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.012   ankyrin repeat domain 12 isoform 1 
PSMD10                0.012   proteasome 26S non-ATPase subunit 10 isoform 1 
ANK1                  0.012   ankyrin 1 isoform 9 
ANK1                  0.012   ankyrin 1 isoform 1 
ANK1                  0.012   ankyrin 1 isoform 3 
ANK1                  0.012   ankyrin 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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