Guide to the Human Genome
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Name: PSMD10 Sequence: fasta or formatted (226aa) NCBI GI: 4506217
Description:

proteasome 26S non-ATPase subunit 10 isoform 1

Referenced in:

Ankyrin Family
Melanoma Antigen Family
Proteasome

Other entries for this name:
alt prot [151aa] proteasome 26S non-ATPase subunit 10 isform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         28           3
 C cysteine            2.2          5           1
 D aspartate           4.9         11           2
 E glutamate           8.4         19           2
 F phenylalanine       0.4          1           1
 G glycine             8.0         18           2
 H histidine           4.0          9           1
 I isoleucine          4.9         11           1
 K lysine              7.1         16           1
 L leucine            11.9         27           2
 M methionine          2.7          6           1
 N asparagine          5.3         12           1
 P proline             2.7          6           1
 Q glutamine           3.1          7           1
 R arginine            3.1          7           1
 S serine              5.3         12           1
 T threonine           4.4         10           1
 V valine              5.8         13           1
 W tryptophan          0.9          2           1
 Y tyrosine            2.7          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proteasome 26S non-ATPase subunit 10 isoform 1 
PSMD10                0.651   proteasome 26S non-ATPase subunit 10 isform 2 
ANK3                  0.232   ankyrin 3 isoform 1 
ANK2                  0.211   ankyrin 2 isoform 3 
ANK2                  0.211   ankyrin 2 isoform 2 
ANK2                  0.211   ankyrin 2 isoform 1 
ANK1                  0.208   ankyrin 1 isoform 9 
ANK1                  0.208   ankyrin 1 isoform 1 
ANK1                  0.208   ankyrin 1 isoform 3 
ANK1                  0.208   ankyrin 1 isoform 2 
ANK1                  0.208   ankyrin 1 isoform 4 
ANKRD28               0.199   ankyrin repeat domain 28 
TNKS2                 0.194   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANKRD50               0.190   ankyrin repeat domain 50 
ANKRD44               0.187   ankyrin repeat domain 44 
TNKS                  0.187   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
EHMT1                 0.185   euchromatic histone-lysine N-methyltransferase 1 is...
LOC441869             0.183   hypothetical protein LOC441869 
ANKK1                 0.183   ankyrin repeat and kinase domain containing 1 
DAPK1                 0.180   death-associated protein kinase 1 
ANKRD23               0.180   diabetes related ankyrin repeat protein 
PPP1R12A              0.178   protein phosphatase 1, regulatory (inhibitor) subun...
PPP1R12A              0.178   protein phosphatase 1, regulatory (inhibitor) subunit...
ANKDD1A               0.178   ankyrin repeat and death domain containing 1A 
PPP1R12C              0.176   protein phosphatase 1, regulatory subunit 12C 
ANKRD52               0.176   ankyrin repeat domain 52 
INVS                  0.176   inversin isoform a 
INVS                  0.176   inversin isoform b 
MIB1                  0.173   mindbomb homolog 1 
HACE1                 0.171   HECT domain and ankyrin repeat containing, E3 ubiqu...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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