Guide to the Human Genome
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Name: RBCK1 Sequence: fasta or formatted (510aa) NCBI GI: 144953898
Description:

RanBP-type and C3HC4-type zinc finger containing 1 isoform 2

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt prot [468aa] RanBP-type and C3HC4-type zinc finger containing 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         32           2
 C cysteine            6.3         32           2
 D aspartate           4.9         25           2
 E glutamate           8.2         42           3
 F phenylalanine       2.4         12           2
 G glycine             6.3         32           2
 H histidine           2.2         11           1
 I isoleucine          2.9         15           1
 K lysine              3.9         20           2
 L leucine             8.8         45           2
 M methionine          2.4         12           1
 N asparagine          2.9         15           1
 P proline             7.6         39           3
 Q glutamine           8.2         42           4
 R arginine            6.7         34           1
 S serine              4.1         21           1
 T threonine           4.9         25           2
 V valine              6.9         35           2
 W tryptophan          1.8          9           1
 Y tyrosine            2.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RanBP-type and C3HC4-type zinc finger containing 1 ... 
RBCK1                 0.900   RanBP-type and C3HC4-type zinc finger containing 1 is...
SHARPIN               0.124   shank-interacting protein-like 1 
RNF216                0.042   ring finger protein 216 isoform b 
RNF216                0.042   ring finger protein 216 isoform a 
RNF19B                0.042   ring finger protein 19B isoform a 
RNF19B                0.042   ring finger protein 19B isoform b 
RNF14                 0.041   ring finger protein 14 isoform 1 
RNF14                 0.041   ring finger protein 14 isoform 1 
RNF14                 0.041   ring finger protein 14 isoform 1 
RNF14                 0.041   ring finger protein 14 isoform 2 
RNF14                 0.041   ring finger protein 14 isoform 1 
RNF217                0.040   ring finger protein 217 
RNF144B               0.039   IBR domain containing 2 
RNF144A               0.039   ring finger protein 144 
RNF31                 0.029   ring finger protein 31 
CUL9                  0.028   p53-associated parkin-like cytoplasmic protein [Homo...
ANKIB1                0.027   ankyrin repeat and IBR domain containing 1 
ARIH2                 0.027   ariadne homolog 2 
RNF19A                0.027   ring finger protein 19 
RNF19A                0.027   ring finger protein 19 
ARIH1                 0.025   ariadne ubiquitin-conjugating enzyme E2 binding pro...
PARK2                 0.022   parkin isoform 3 
PARK2                 0.022   parkin isoform 2 
PARK2                 0.022   parkin isoform 1 
LONRF2                0.016   LON peptidase N-terminal domain and ring finger 2 [...
TULP4                 0.016   tubby like protein 4 isoform 1 
TRERF1                0.015   transcriptional regulating factor 1 
PCGF6                 0.015   polycomb group ring finger 6 isoform a 
PCGF6                 0.015   polycomb group ring finger 6 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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