Guide to the Human Genome
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Name: RNF144A Sequence: fasta or formatted (292aa) NCBI GI: 38045938
Description:

ring finger protein 144

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         20           2
 C cysteine           10.3         30           2
 D aspartate           5.1         15           3
 E glutamate           6.5         19           2
 F phenylalanine       4.1         12           1
 G glycine             4.8         14           1
 H histidine           2.1          6           1
 I isoleucine          4.1         12           1
 K lysine              6.5         19           2
 L leucine            10.3         30           4
 M methionine          3.1          9           2
 N asparagine          1.0          3           1
 P proline             6.8         20           1
 Q glutamine           5.8         17           1
 R arginine            3.8         11           1
 S serine              3.8         11           1
 T threonine           6.2         18           3
 V valine              4.8         14           2
 W tryptophan          1.7          5           1
 Y tyrosine            2.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 144 
RNF144B               0.538   IBR domain containing 2 
RNF19B                0.144   ring finger protein 19B isoform b 
RNF19B                0.141   ring finger protein 19B isoform a 
RNF19A                0.136   ring finger protein 19 
RNF19A                0.136   ring finger protein 19 
ARIH2                 0.125   ariadne homolog 2 
ARIH1                 0.120   ariadne ubiquitin-conjugating enzyme E2 binding pro...
RNF14                 0.116   ring finger protein 14 isoform 1 
RNF14                 0.116   ring finger protein 14 isoform 1 
RNF14                 0.116   ring finger protein 14 isoform 1 
RNF14                 0.116   ring finger protein 14 isoform 2 
RNF14                 0.116   ring finger protein 14 isoform 1 
RNF216                0.095   ring finger protein 216 isoform b 
RNF216                0.095   ring finger protein 216 isoform a 
ANKIB1                0.090   ankyrin repeat and IBR domain containing 1 
CUL9                  0.085   p53-associated parkin-like cytoplasmic protein [Homo...
RNF31                 0.077   ring finger protein 31 
RNF217                0.072   ring finger protein 217 
RBCK1                 0.067   RanBP-type and C3HC4-type zinc finger containing 1 is...
RBCK1                 0.067   RanBP-type and C3HC4-type zinc finger containing 1 ...
PARK2                 0.046   parkin isoform 3 
PARK2                 0.046   parkin isoform 2 
PARK2                 0.046   parkin isoform 1 
TRIM67                0.021   tripartite motif-containing 67 
TRIM25                0.020   tripartite motif-containing 25 
PCGF3                 0.015   ring finger protein 3 
ZNF645                0.015   zinc finger protein 645 
SPRED3                0.015   sprouty-related, EVH1 domain containing 3 isoform a...
BMI1                  0.013   BMI1 polycomb ring finger oncogene 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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