Guide to the Human Genome
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Name: PARK2 Sequence: fasta or formatted (465aa) NCBI GI: 169790969
Description:

parkin isoform 1

Referenced in:

Gene Structure
Neurons
PDZ Domain
Ring Finger Proteins
Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [437aa] parkin isoform 2
alt prot [316aa] parkin isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         27           2
 C cysteine            7.5         35           1
 D aspartate           4.9         23           2
 E glutamate           6.0         28           2
 F phenylalanine       3.7         17           3
 G glycine             8.2         38           2
 H histidine           3.2         15           2
 I isoleucine          3.2         15           1
 K lysine              3.9         18           2
 L leucine             6.5         30           2
 M methionine          1.5          7           1
 N asparagine          3.7         17           1
 P proline             6.2         29           2
 Q glutamine           5.8         27           2
 R arginine            6.7         31           1
 S serine              6.5         30           3
 T threonine           5.2         24           3
 V valine              7.7         36           2
 W tryptophan          1.7          8           1
 Y tyrosine            2.2         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   parkin isoform 1 
PARK2                 0.919   parkin isoform 2 
PARK2                 0.565   parkin isoform 3 
ARIH1                 0.060   ariadne ubiquitin-conjugating enzyme E2 binding pro...
ARIH2                 0.053   ariadne homolog 2 
RNF14                 0.053   ring finger protein 14 isoform 1 
RNF14                 0.053   ring finger protein 14 isoform 1 
RNF14                 0.053   ring finger protein 14 isoform 1 
RNF14                 0.053   ring finger protein 14 isoform 2 
RNF14                 0.053   ring finger protein 14 isoform 1 
CUL9                  0.043   p53-associated parkin-like cytoplasmic protein [Homo...
ANKIB1                0.040   ankyrin repeat and IBR domain containing 1 
RNF19A                0.036   ring finger protein 19 
RNF19A                0.036   ring finger protein 19 
RNF19B                0.034   ring finger protein 19B isoform a 
RNF19B                0.032   ring finger protein 19B isoform b 
RNF144A               0.029   ring finger protein 144 
RNF217                0.028   ring finger protein 217 
UBC                   0.027   ubiquitin C 
UBB                   0.026   ubiquitin B precursor 
RPS27A                0.026   ubiquitin and ribosomal protein S27a precursor [Hom...
RPS27A                0.026   ubiquitin and ribosomal protein S27a precursor 
UBA52                 0.026   ubiquitin and ribosomal protein L40 precursor 
UBA52                 0.026   ubiquitin and ribosomal protein L40 precursor 
LOC100128355          0.026   PREDICTED: similar to hCG1790904 
LOC100128355          0.026   PREDICTED: similar to hCG1790904 
LOC100128355          0.026   PREDICTED: similar to hCG1790904 
RBCK1                 0.024   RanBP-type and C3HC4-type zinc finger containing 1 is...
RBCK1                 0.024   RanBP-type and C3HC4-type zinc finger containing 1 ...
RNF216                0.019   ring finger protein 216 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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