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Search of human proteins with 148277022
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148277022 selenoprotein P isoform 2 [Homo sapiens]
(411 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148277022 selenoprotein P isoform 2 [Homo sapiens] 835 0.0
gi|148277018 selenoprotein P isoform 1 precursor [Homo sapiens] 773 0.0
gi|62530391 selenoprotein P isoform 1 precursor [Homo sapiens] 773 0.0
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 44 3e-04
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 44 3e-04
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 44 3e-04
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa... 44 3e-04
gi|148664226 plakophilin 2 isoform 2b [Homo sapiens] 43 5e-04
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 43 5e-04
gi|61966923 forkhead box B2 [Homo sapiens] 43 6e-04
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens] 42 8e-04
gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo s... 42 0.001
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 41 0.002
gi|116256455 zinc finger protein 429 [Homo sapiens] 40 0.003
gi|27894361 nuclear receptor subfamily 4, group A, member 3 isof... 40 0.004
gi|27894359 nuclear receptor subfamily 4, group A, member 3 isof... 40 0.004
gi|27894357 nuclear receptor subfamily 4, group A, member 3 isof... 40 0.004
gi|27894355 nuclear receptor subfamily 4, group A, member 3 isof... 40 0.004
gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regula... 40 0.005
gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regula... 40 0.005
gi|32698730 nuclear fragile X mental retardation protein interac... 39 0.007
gi|17978466 cyclin T1 [Homo sapiens] 38 0.015
gi|4759046 RNA polymerase I subunit isoform 2 [Homo sapiens] 38 0.019
gi|119220564 one cut domain, family member 2 [Homo sapiens] 37 0.025
gi|23308699 transcription factor MAFB [Homo sapiens] 37 0.033
gi|40288197 GATA binding protein 6 [Homo sapiens] 37 0.033
gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens] 37 0.033
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 37 0.043
gi|5031761 homeobox A1 isoform a [Homo sapiens] 37 0.043
gi|55770830 chromobox homolog 4 [Homo sapiens] 37 0.043
>gi|148277022 selenoprotein P isoform 2 [Homo sapiens]
Length = 411
Score = 835 bits (2158), Expect = 0.0
Identities = 411/411 (100%), Positives = 411/411 (100%)
Query: 1 MCSGLDAVAHACNPSTLGGQGRRITRTTPAMWRSLGLALALCLLPSGGTESQDQSSLCKQ 60
MCSGLDAVAHACNPSTLGGQGRRITRTTPAMWRSLGLALALCLLPSGGTESQDQSSLCKQ
Sbjct: 1 MCSGLDAVAHACNPSTLGGQGRRITRTTPAMWRSLGLALALCLLPSGGTESQDQSSLCKQ 60
Query: 61 PPAWSIRDQDPMLNSNGSVTVVALLQASUYLCILQASKLEDLRVKLKKEGYSNISYIVVN 120
PPAWSIRDQDPMLNSNGSVTVVALLQAS YLCILQASKLEDLRVKLKKEGYSNISYIVVN
Sbjct: 61 PPAWSIRDQDPMLNSNGSVTVVALLQASUYLCILQASKLEDLRVKLKKEGYSNISYIVVN 120
Query: 121 HQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWTLLNGSKDDFLIYDRCGRLVYHLGLP 180
HQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWTLLNGSKDDFLIYDRCGRLVYHLGLP
Sbjct: 121 HQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWTLLNGSKDDFLIYDRCGRLVYHLGLP 180
Query: 181 FSFLTFPYVEEAIKIAYCEKKCGNCSLTTLKDEDFCKRVSLATVDKTVETPSPHYHHEHH 240
FSFLTFPYVEEAIKIAYCEKKCGNCSLTTLKDEDFCKRVSLATVDKTVETPSPHYHHEHH
Sbjct: 181 FSFLTFPYVEEAIKIAYCEKKCGNCSLTTLKDEDFCKRVSLATVDKTVETPSPHYHHEHH 240
Query: 241 HNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQHRQGHPENRDMPASEDLQ 300
HNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQHRQGHPENRDMPASEDLQ
Sbjct: 241 HNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQHRQGHPENRDMPASEDLQ 300
Query: 301 DLQKKLCRKRCINQLLCKLPTDSELAPRSUCCHCRHLIFEKTGSAITUQCKENLPSLCSU 360
DLQKKLCRKRCINQLLCKLPTDSELAPRS CCHCRHLIFEKTGSAIT QCKENLPSLCS
Sbjct: 301 DLQKKLCRKRCINQLLCKLPTDSELAPRSUCCHCRHLIFEKTGSAITUQCKENLPSLCSU 360
Query: 361 QGLRAEENITESCQURLPPAAUQISQQLIPTEASASURUKNQAKKUEUPSN 411
QGLRAEENITESCQ RLPPAA QISQQLIPTEASAS R KNQAKK E PSN
Sbjct: 361 QGLRAEENITESCQURLPPAAUQISQQLIPTEASASURUKNQAKKUEUPSN 411
>gi|148277018 selenoprotein P isoform 1 precursor [Homo sapiens]
Length = 381
Score = 773 bits (1997), Expect = 0.0
Identities = 381/381 (100%), Positives = 381/381 (100%)
Query: 31 MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASUY 90
MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQAS Y
Sbjct: 1 MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASUY 60
Query: 91 LCILQASKLEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQ 150
LCILQASKLEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQ
Sbjct: 61 LCILQASKLEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQ 120
Query: 151 TDVWTLLNGSKDDFLIYDRCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLTTL 210
TDVWTLLNGSKDDFLIYDRCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLTTL
Sbjct: 121 TDVWTLLNGSKDDFLIYDRCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLTTL 180
Query: 211 KDEDFCKRVSLATVDKTVETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAP 270
KDEDFCKRVSLATVDKTVETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAP
Sbjct: 181 KDEDFCKRVSLATVDKTVETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAP 240
Query: 271 PGLHHHHKHKGQHRQGHPENRDMPASEDLQDLQKKLCRKRCINQLLCKLPTDSELAPRSU 330
PGLHHHHKHKGQHRQGHPENRDMPASEDLQDLQKKLCRKRCINQLLCKLPTDSELAPRS
Sbjct: 241 PGLHHHHKHKGQHRQGHPENRDMPASEDLQDLQKKLCRKRCINQLLCKLPTDSELAPRSU 300
Query: 331 CCHCRHLIFEKTGSAITUQCKENLPSLCSUQGLRAEENITESCQURLPPAAUQISQQLIP 390
CCHCRHLIFEKTGSAIT QCKENLPSLCS QGLRAEENITESCQ RLPPAA QISQQLIP
Sbjct: 301 CCHCRHLIFEKTGSAITUQCKENLPSLCSUQGLRAEENITESCQURLPPAAUQISQQLIP 360
Query: 391 TEASASURUKNQAKKUEUPSN 411
TEASAS R KNQAKK E PSN
Sbjct: 361 TEASASURUKNQAKKUEUPSN 381
>gi|62530391 selenoprotein P isoform 1 precursor [Homo sapiens]
Length = 381
Score = 773 bits (1997), Expect = 0.0
Identities = 381/381 (100%), Positives = 381/381 (100%)
Query: 31 MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASUY 90
MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQAS Y
Sbjct: 1 MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASUY 60
Query: 91 LCILQASKLEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQ 150
LCILQASKLEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQ
Sbjct: 61 LCILQASKLEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQ 120
Query: 151 TDVWTLLNGSKDDFLIYDRCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLTTL 210
TDVWTLLNGSKDDFLIYDRCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLTTL
Sbjct: 121 TDVWTLLNGSKDDFLIYDRCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLTTL 180
Query: 211 KDEDFCKRVSLATVDKTVETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAP 270
KDEDFCKRVSLATVDKTVETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAP
Sbjct: 181 KDEDFCKRVSLATVDKTVETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAP 240
Query: 271 PGLHHHHKHKGQHRQGHPENRDMPASEDLQDLQKKLCRKRCINQLLCKLPTDSELAPRSU 330
PGLHHHHKHKGQHRQGHPENRDMPASEDLQDLQKKLCRKRCINQLLCKLPTDSELAPRS
Sbjct: 241 PGLHHHHKHKGQHRQGHPENRDMPASEDLQDLQKKLCRKRCINQLLCKLPTDSELAPRSU 300
Query: 331 CCHCRHLIFEKTGSAITUQCKENLPSLCSUQGLRAEENITESCQURLPPAAUQISQQLIP 390
CCHCRHLIFEKTGSAIT QCKENLPSLCS QGLRAEENITESCQ RLPPAA QISQQLIP
Sbjct: 301 CCHCRHLIFEKTGSAITUQCKENLPSLCSUQGLRAEENITESCQURLPPAAUQISQQLIP 360
Query: 391 TEASASURUKNQAKKUEUPSN 411
TEASAS R KNQAKK E PSN
Sbjct: 361 TEASASURUKNQAKKUEUPSN 381
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 43.5 bits (101), Expect = 3e-04
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 13/62 (20%)
Query: 233 PHYHHEHHHNHGHQH-------------LGSSELSENQQPGAPNAPTHPAPPGLHHHHKH 279
PH+HH HH+H H H SE P P P P PP L H H
Sbjct: 654 PHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHH 713
Query: 280 KG 281
+G
Sbjct: 714 RG 715
Score = 35.4 bits (80), Expect = 0.095
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 12/76 (15%)
Query: 231 PSPHYHH----------EHHHNHGHQHLGSSELSEN--QQPGAPNAPTHPAPPGLHHHHK 278
P+PH+ H +HH+ + +G + +E+ + GA H A HHHH
Sbjct: 600 PAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHH 659
Query: 279 HKGQHRQGHPENRDMP 294
H HP P
Sbjct: 660 PHHHHHHHHPPQPPSP 675
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 43.5 bits (101), Expect = 3e-04
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 13/62 (20%)
Query: 233 PHYHHEHHHNHGHQH-------------LGSSELSENQQPGAPNAPTHPAPPGLHHHHKH 279
PH+HH HH+H H H SE P P P P PP L H H
Sbjct: 654 PHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHH 713
Query: 280 KG 281
+G
Sbjct: 714 RG 715
Score = 35.4 bits (80), Expect = 0.095
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 12/76 (15%)
Query: 231 PSPHYHH----------EHHHNHGHQHLGSSELSEN--QQPGAPNAPTHPAPPGLHHHHK 278
P+PH+ H +HH+ + +G + +E+ + GA H A HHHH
Sbjct: 600 PAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHH 659
Query: 279 HKGQHRQGHPENRDMP 294
H HP P
Sbjct: 660 PHHHHHHHHPPQPPSP 675
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 43.5 bits (101), Expect = 3e-04
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 13/62 (20%)
Query: 233 PHYHHEHHHNHGHQH-------------LGSSELSENQQPGAPNAPTHPAPPGLHHHHKH 279
PH+HH HH+H H H SE P P P P PP L H H
Sbjct: 654 PHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHH 713
Query: 280 KG 281
+G
Sbjct: 714 RG 715
Score = 35.4 bits (80), Expect = 0.095
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 12/76 (15%)
Query: 231 PSPHYHH----------EHHHNHGHQHLGSSELSEN--QQPGAPNAPTHPAPPGLHHHHK 278
P+PH+ H +HH+ + +G + +E+ + GA H A HHHH
Sbjct: 600 PAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHSAQTHPHHHHH 659
Query: 279 HKGQHRQGHPENRDMP 294
H HP P
Sbjct: 660 PHHHHHHHHPPQPPSP 675
>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
Length = 443
Score = 43.5 bits (101), Expect = 3e-04
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 16/75 (21%)
Query: 236 HHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQHRQGHPENRDMPA 295
HH HH H H H +QQP P P PPG H G H H + D P
Sbjct: 223 HHADHHPHPHSH-------PHQQPPPPPPPQ--GPPG------HPGAHHDPH-SDEDTPT 266
Query: 296 SEDLQDLQKKLCRKR 310
S+DL+ K+ ++R
Sbjct: 267 SDDLEQFAKQFKQRR 281
>gi|148664226 plakophilin 2 isoform 2b [Homo sapiens]
Length = 881
Score = 43.1 bits (100), Expect = 5e-04
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 7 AVAHACNPSTLGGQGRRITRT 27
AVAHACNPSTLGGQG RITR+
Sbjct: 474 AVAHACNPSTLGGQGGRITRS 494
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 43.1 bits (100), Expect = 5e-04
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 229 ETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQHRQGHP 288
+TP HH HHH+H H H Q P A PGL+ H H
Sbjct: 263 DTPELAEHHHHHHHHAHPH--PPHPHHAQGPPHHGGGGGGAGPGLNSHDPH--------- 311
Query: 289 ENRDMPASEDLQDLQKKLCRKR 310
+ D P S+DL+ K+ ++R
Sbjct: 312 SDEDTPTSDDLEQFAKQFKQRR 333
>gi|61966923 forkhead box B2 [Homo sapiens]
Length = 432
Score = 42.7 bits (99), Expect = 6e-04
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 234 HYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGL-HHHHKHKGQHRQGHPENRD 292
H HH HH +H H H ++ + P P P P PP + H+ H+ Q P
Sbjct: 137 HPHHHHHPHHHHHHHAAAHHHHHHHPPQPPPPPPPPPPHMVHYFHQQPPTAPQPPPHLPS 196
Query: 293 MPASEDLQDLQ 303
P + Q Q
Sbjct: 197 QPPQQPPQQSQ 207
Score = 37.0 bits (84), Expect = 0.033
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 242 NHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQHRQGH 287
+H H H GS++ + PG P H P HHHH H H H
Sbjct: 115 DHTHLHAGSTKSAPGAGPGGHLHPHHHHHPH-HHHHHHAAAHHHHH 159
>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
Length = 374
Score = 42.4 bits (98), Expect = 8e-04
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 3 SGLDAVAHACNPSTLGGQGRRITRT 27
+GL AVAHACNPSTLGG+G ITR+
Sbjct: 343 AGLGAVAHACNPSTLGGRGGWITRS 367
>gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo
sapiens]
Length = 291
Score = 41.6 bits (96), Expect = 0.001
Identities = 18/21 (85%), Positives = 20/21 (95%)
Query: 7 AVAHACNPSTLGGQGRRITRT 27
AVAHACNPSTLGG+G RITR+
Sbjct: 267 AVAHACNPSTLGGRGGRITRS 287
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 41.2 bits (95), Expect = 0.002
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 15/60 (25%)
Query: 231 PSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQHRQGHPEN 290
P PH+HH HHH+H H H QP P HP HHH+ + H PE+
Sbjct: 334 PPPHHHHHHHHHHHHHH-------HRAQP--PQQSHHPP-----HHHRPQ-PHLGSFPES 378
>gi|116256455 zinc finger protein 429 [Homo sapiens]
Length = 674
Score = 40.4 bits (93), Expect = 0.003
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 5 LDAVAHACNPSTLGGQGRRITRT 27
+ VAHACNPSTLGG+G RITR+
Sbjct: 645 MGVVAHACNPSTLGGRGGRITRS 667
>gi|27894361 nuclear receptor subfamily 4, group A, member 3 isoform
b [Homo sapiens]
Length = 637
Score = 40.0 bits (92), Expect = 0.004
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 226 KTVETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNA 264
K E +P YHH HHH+H H H ++QQP P A
Sbjct: 96 KVEEGRAPSYHHHHHHHHHHHH---HHQQQHQQPSIPPA 131
Score = 29.6 bits (65), Expect = 5.2
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 271 PGLHHHHKHKGQHRQGHPENRDMPA 295
P HHHH H H H + P+
Sbjct: 103 PSYHHHHHHHHHHHHHHQQQHQQPS 127
Score = 29.3 bits (64), Expect = 6.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 274 HHHHKHKGQHRQGHPENRDMPAS 296
HHHH H H+Q H + PAS
Sbjct: 110 HHHHHHHHHHQQQHQQPSIPPAS 132
>gi|27894359 nuclear receptor subfamily 4, group A, member 3 isoform
c [Homo sapiens]
Length = 443
Score = 40.0 bits (92), Expect = 0.004
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 226 KTVETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNA 264
K E +P YHH HHH+H H H ++QQP P A
Sbjct: 85 KVEEGRAPSYHHHHHHHHHHHH---HHQQQHQQPSIPPA 120
Score = 29.6 bits (65), Expect = 5.2
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 271 PGLHHHHKHKGQHRQGHPENRDMPA 295
P HHHH H H H + P+
Sbjct: 92 PSYHHHHHHHHHHHHHHQQQHQQPS 116
Score = 29.3 bits (64), Expect = 6.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 274 HHHHKHKGQHRQGHPENRDMPAS 296
HHHH H H+Q H + PAS
Sbjct: 99 HHHHHHHHHHQQQHQQPSIPPAS 121
>gi|27894357 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 40.0 bits (92), Expect = 0.004
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 226 KTVETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNA 264
K E +P YHH HHH+H H H ++QQP P A
Sbjct: 85 KVEEGRAPSYHHHHHHHHHHHH---HHQQQHQQPSIPPA 120
Score = 29.6 bits (65), Expect = 5.2
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 271 PGLHHHHKHKGQHRQGHPENRDMPA 295
P HHHH H H H + P+
Sbjct: 92 PSYHHHHHHHHHHHHHHQQQHQQPS 116
Score = 29.3 bits (64), Expect = 6.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 274 HHHHKHKGQHRQGHPENRDMPAS 296
HHHH H H+Q H + PAS
Sbjct: 99 HHHHHHHHHHQQQHQQPSIPPAS 121
>gi|27894355 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 40.0 bits (92), Expect = 0.004
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 226 KTVETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNA 264
K E +P YHH HHH+H H H ++QQP P A
Sbjct: 85 KVEEGRAPSYHHHHHHHHHHHH---HHQQQHQQPSIPPA 120
Score = 29.6 bits (65), Expect = 5.2
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 271 PGLHHHHKHKGQHRQGHPENRDMPA 295
P HHHH H H H + P+
Sbjct: 92 PSYHHHHHHHHHHHHHHQQQHQQPS 116
Score = 29.3 bits (64), Expect = 6.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 274 HHHHKHKGQHRQGHPENRDMPAS 296
HHHH H H+Q H + PAS
Sbjct: 99 HHHHHHHHHHQQQHQQPSIPPAS 121
>gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 2 [Homo sapiens]
Length = 754
Score = 39.7 bits (91), Expect = 0.005
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 236 HHEHHHNHGHQHLGSSELSENQQPGAPNAPTH 267
HH HHH+H H H G L +P N+PT+
Sbjct: 598 HHHHHHHHHHHHHGQQALGNRTRPRVYNSPTN 629
Score = 28.9 bits (63), Expect = 8.9
Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 29/61 (47%)
Query: 234 HYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQHRQGHPENRDM 293
H+HH + +H H H HHHH H GQ G NR
Sbjct: 590 HHHHGNSSHHHHHH--------------------------HHHHHHHGQQALG---NRTR 620
Query: 294 P 294
P
Sbjct: 621 P 621
>gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 1 [Homo sapiens]
Length = 763
Score = 39.7 bits (91), Expect = 0.005
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 236 HHEHHHNHGHQHLGSSELSENQQPGAPNAPTH 267
HH HHH+H H H G L +P N+PT+
Sbjct: 607 HHHHHHHHHHHHHGQQALGNRTRPRVYNSPTN 638
Score = 28.9 bits (63), Expect = 8.9
Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 29/61 (47%)
Query: 234 HYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQHRQGHPENRDM 293
H+HH + +H H H HHHH H GQ G NR
Sbjct: 599 HHHHGNSSHHHHHH--------------------------HHHHHHHGQQALG---NRTR 629
Query: 294 P 294
P
Sbjct: 630 P 630
>gi|32698730 nuclear fragile X mental retardation protein
interacting protein 2 [Homo sapiens]
Length = 695
Score = 39.3 bits (90), Expect = 0.007
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 235 YHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQHRQGHPENR 291
Y+H H+H+H H H + ++ G+P A P L H KH Q Q P+ +
Sbjct: 39 YNHSHNHHHHHHHQQPHQYLQHGAEGSPKAQPKP----LKHEQKHTLQQHQETPKKK 91
Score = 38.5 bits (88), Expect = 0.011
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 231 PSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQHRQGH 287
P P +HH HHH H H QQ P+ H H+H H H+Q H
Sbjct: 8 PQPQHHHSHHHPHHH---------PQQQQQQPHHHHHYYFYNHSHNHHHHHHHQQPH 55
>gi|17978466 cyclin T1 [Homo sapiens]
Length = 726
Score = 38.1 bits (87), Expect = 0.015
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 231 PSPHYHHEHHHNHGHQHLGSSELSENQQPGAP 262
PS H+HH +HH+H H H + N++PG P
Sbjct: 514 PSNHHHHHNHHSHKHSHSQLPVGTGNKRPGDP 545
>gi|4759046 RNA polymerase I subunit isoform 2 [Homo sapiens]
Length = 342
Score = 37.7 bits (86), Expect = 0.019
Identities = 17/21 (80%), Positives = 17/21 (80%)
Query: 5 LDAVAHACNPSTLGGQGRRIT 25
L AVAH CNPSTLGGQG IT
Sbjct: 313 LAAVAHTCNPSTLGGQGEWIT 333
>gi|119220564 one cut domain, family member 2 [Homo sapiens]
Length = 504
Score = 37.4 bits (85), Expect = 0.025
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 221 LATVDKTVETPSPHYHHEHHHNHGHQHLGSS 251
++TV P PH+H HHH+H HQ L +
Sbjct: 160 ISTVSDKFHHPHPHHHPHHHHHHHHQRLSGN 190
Score = 29.6 bits (65), Expect = 5.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 234 HYHHEHHHNHGHQHLGSSELSEN 256
H+ H HHH H H H LS N
Sbjct: 168 HHPHPHHHPHHHHHHHHQRLSGN 190
>gi|23308699 transcription factor MAFB [Homo sapiens]
Length = 323
Score = 37.0 bits (84), Expect = 0.033
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 234 HYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHK 280
H+HH HHH H H + ++ ++ P+A HP HHHH H+
Sbjct: 131 HHHHHHHHPHPHHAYPGAGVAHDEL--GPHA--HP-----HHHHHHQ 168
Score = 31.2 bits (69), Expect = 1.8
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 233 PHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQHRQGHPENR- 291
PH H HHH+H SS S QQ PT PG H G E+R
Sbjct: 157 PHAHPHHHHHHQASPPPSSAASPAQQ-----LPTSHPGPGPHATASATAAGGNGSVEDRF 211
Query: 292 --DMPASEDLQDLQKKL 306
D S +++L + L
Sbjct: 212 SDDQLVSMSVRELNRHL 228
>gi|40288197 GATA binding protein 6 [Homo sapiens]
Length = 595
Score = 37.0 bits (84), Expect = 0.033
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 235 YHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQHRQGHPENRDM- 293
YHH HHH+H H S + GAP P PA P H Q R G P
Sbjct: 323 YHHHHHHHHHHPSPYSPYV------GAPLTPAWPAGP-FETPVLHSLQSRAGAPLPVPRG 375
Query: 294 PASEDLQDLQKKLCRKRCIN 313
P+++ L+DL + + C+N
Sbjct: 376 PSADLLEDLSES---RECVN 392
>gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]
Length = 1488
Score = 37.0 bits (84), Expect = 0.033
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 19/59 (32%)
Query: 232 SPHYHHEHHHNHGHQHLGSSELSENQQ------------PG-------APNAPTHPAPP 271
S +HH HHH+HGH H G L + Q PG P P+ P PP
Sbjct: 1236 SSTHHHHHHHHHGHSHGGLGVLPDGQSKLQALHAQYCQGPGPAPPPYLPPQQPSLPPPP 1294
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 36.6 bits (83), Expect = 0.043
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 249 GSSELSENQQPGAPNAPTHPAPPG 272
G + EN PGAP AP HP PPG
Sbjct: 1030 GKGDRGENGSPGAPGAPGHPGPPG 1053
>gi|5031761 homeobox A1 isoform a [Homo sapiens]
Length = 335
Score = 36.6 bits (83), Expect = 0.043
Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 36/94 (38%)
Query: 224 VDKTVETPSPHYHHEHHHNH----------------GHQHLGSSELSEN-QQPGAPNAPT 266
V + V+ SPH+HH HHH+H H G S S+N P +P A
Sbjct: 55 VGRGVQIGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALN 114
Query: 267 HPA-------------------PPGLHHHHKHKG 281
A P + HHH H+G
Sbjct: 115 QEADVSGGYPQCAPAVYSGNLSSPMVQHHHHHQG 148
>gi|55770830 chromobox homolog 4 [Homo sapiens]
Length = 560
Score = 36.6 bits (83), Expect = 0.043
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 231 PSPHYHHEHHHNHGHQHLGSSELS 254
P PH HH HHH+H H H LS
Sbjct: 384 PHPHPHHHHHHHHHHHHAVGLNLS 407
Score = 28.9 bits (63), Expect = 8.9
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 244 GHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQHRQGHPENRDMPASEDLQ 300
GHQ+ +S+ QP + P PPG + ++ ++ HP D P DLQ
Sbjct: 117 GHQYELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPD-PKMYDLQ 172
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,613,137
Number of Sequences: 37866
Number of extensions: 872099
Number of successful extensions: 6126
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 4219
Number of HSP's gapped (non-prelim): 987
length of query: 411
length of database: 18,247,518
effective HSP length: 105
effective length of query: 306
effective length of database: 14,271,588
effective search space: 4367105928
effective search space used: 4367105928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.