POLR1C 30807

Name: POLR1C	Sequence: fasta or formatted (342aa)		NCBI GI: 4759046
Description: RNA polymerase I subunit isoform 2		Referenced in: RNA Polymerase and General Transcription Factors
Other entries for this name: alt prot [346aa] RNA polymerase I subunit isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.9 27 2 C cysteine 1.5 5 1 D aspartate 7.3 25 2 E glutamate 7.9 27 2 F phenylalanine 3.8 13 1 G glycine 6.1 21 2 H histidine 3.8 13 1 I isoleucine 5.6 19 1 K lysine 4.1 14 2 L leucine 8.5 29 2 M methionine 2.0 7 1 N asparagine 4.4 15 2 P proline 5.0 17 1 Q glutamine 3.5 12 1 R arginine 7.9 27 2 S serine 4.1 14 2 T threonine 4.7 16 2 V valine 8.8 30 2 W tryptophan 0.9 3 1 Y tyrosine 2.3 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 RNA polymerase I subunit isoform 2 POLR1C 0.888 RNA polymerase I subunit isoform 1 POLR2C 0.112 DNA directed RNA polymerase II polypeptide C FBLIM1 0.045 filamin-binding LIM protein-1 isoform b ZNF429 0.031 zinc finger protein 429 PKP2 0.025 plakophilin 2 isoform 2b LOC100292050 0.022 PREDICTED: hypothetical protein XP_002344942 LOC100290814 0.022 PREDICTED: hypothetical protein XP_002347710 LOC100287593 0.022 PREDICTED: hypothetical protein XP_002344133 SEPP1 0.019 selenoprotein P isoform 2 ADAMTS2 0.018 ADAM metallopeptidase with thrombospondin type 1 mot... YIF1B 0.016 Yip1 interacting factor homolog B isoform 7 ZNF714 0.016 zinc finger protein 714 TTF1 0.015 transcription termination factor, RNA polymerase I [... LOC100128895 0.013 PREDICTED: hypothetical protein LOC100128895 0.013 PREDICTED: hypothetical protein LOC100128895 0.013 PREDICTED: hypothetical protein BIRC5 0.007 baculoviral IAP repeat-containing protein 5 isoform ... RANBP6 0.007 RAN binding protein 6 IPO13 0.006 importin 13 AGRN 0.006 agrin SNX29 0.006 sorting nexin 29 ARHGAP11A 0.006 Rho GTPase activating protein 11A isoform 1 ARHGAP11A 0.006 Rho GTPase activating protein 11A isoform 2 ZNF669 0.004 zinc finger protein 669 isoform 2 ZNF669 0.004 zinc finger protein 669 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.