Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NOL4 Sequence: fasta or formatted (638aa) NCBI GI: 148235600
Description:

nucleolar protein 4

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         38           2
 C cysteine            1.1          7           1
 D aspartate           7.7         49           3
 E glutamate           8.0         51           2
 F phenylalanine       2.5         16           2
 G glycine             6.6         42           5
 H histidine           2.2         14           1
 I isoleucine          3.3         21           2
 K lysine              6.0         38           2
 L leucine             7.7         49           2
 M methionine          3.3         21           1
 N asparagine          5.2         33           1
 P proline             3.6         23           2
 Q glutamine           5.2         33           2
 R arginine            6.9         44           2
 S serine             12.5         80           5
 T threonine           4.5         29           2
 V valine              4.2         27           2
 W tryptophan          0.3          2           1
 Y tyrosine            3.3         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nucleolar protein 4 
C20orf112             0.297   hypothetical protein LOC140688 
DSPP                  0.027   dentin sialophosphoprotein preproprotein 
LEO1                  0.018   Leo1, Paf1/RNA polymerase II complex component, homo...
DMP1                  0.014   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.014   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
UNC13A                0.014   unc-13 homolog A 
TNRC18                0.014   trinucleotide repeat containing 18 
UBTF                  0.012   upstream binding transcription factor, RNA polymera...
UBTF                  0.012   upstream binding transcription factor, RNA polymera...
UBTF                  0.012   upstream binding transcription factor, RNA polymerase...
KIAA1009              0.012   KIAA1009 protein 
HRNR                  0.011   hornerin 
SETD1A                0.011   SET domain containing 1A 
KIAA1107              0.011   hypothetical protein LOC23285 
ZAK                   0.011   MLK-related kinase isoform 2 
ACRC                  0.011   ACRC protein 
RBM33                 0.010   RNA binding motif protein 33 
SCAND3                0.010   SCAN domain containing 3 
BAZ2B                 0.010   bromodomain adjacent to zinc finger domain, 2B [Homo...
SETD1B                0.010   SET domain containing 1B 
C14orf37              0.010   hypothetical protein LOC145407 
HRC                   0.010   histidine rich calcium binding protein precursor [Hom...
RTF1                  0.010   Paf1/RNA polymerase II complex component 
CHD5                  0.010   chromodomain helicase DNA binding protein 5 
CHD1                  0.010   chromodomain helicase DNA binding protein 1 
KRBA2                 0.009   KRAB-A domain containing 2 
ACIN1                 0.009   apoptotic chromatin condensation inducer 1 
KDM6B                 0.009   lysine (K)-specific demethylase 6B 
CWC22                 0.009   CWC22 spliceosome-associated protein homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press