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Search of human proteins with 9910354
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9910354 THAP domain containing 10 [Homo sapiens]
(257 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9910354 THAP domain containing 10 [Homo sapiens] 530 e-151
gi|13899259 THAP domain containing, apoptosis associated protein... 46 4e-05
gi|42734379 THAP domain containing, apoptosis associated protein... 44 1e-04
gi|56788351 THAP domain containing 7 isoform 2 [Homo sapiens] 37 0.017
gi|56788349 THAP domain containing 7 isoform 1 [Homo sapiens] 37 0.017
gi|194440668 THAP domain containing 5 isoform 1 [Homo sapiens] 35 0.084
gi|55749480 syndecan 1 precursor [Homo sapiens] 33 0.32
gi|29568086 syndecan 1 precursor [Homo sapiens] 33 0.32
gi|22749337 THAP domain containing 8 [Homo sapiens] 32 0.42
gi|153070260 myristoylated alanine-rich protein kinase C substra... 31 1.2
gi|83921602 solute carrier family 38, member 10 isoform a [Homo ... 31 1.2
gi|154744870 zinc finger protein 574 [Homo sapiens] 31 1.2
gi|46198301 hypothetical protein LOC79081 [Homo sapiens] 31 1.2
gi|5031633 FERM, RhoGEF, and pleckstrin domain protein 1 isoform... 30 1.6
gi|171543895 ataxin 2 [Homo sapiens] 30 2.1
gi|4885279 GLI family zinc finger 1 isoform 1 [Homo sapiens] 30 2.7
gi|8922446 THAP domain containing, apoptosis associated protein ... 30 2.7
gi|113423021 PREDICTED: similar to hCG1820409 [Homo sapiens] 30 2.7
gi|113422497 PREDICTED: similar to hCG1820409 [Homo sapiens] 30 2.7
gi|195539337 S-adenosylhomocysteine hydrolase-like 2 isoform b [... 29 3.5
gi|24308043 S-adenosylhomocysteine hydrolase-like 2 isoform a [H... 29 3.5
gi|40354197 THAP domain containing 11 [Homo sapiens] 29 3.5
gi|54860079 nadrin isoform 1 [Homo sapiens] 29 3.5
gi|54860105 nadrin isoform 2 [Homo sapiens] 29 3.5
gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens] 29 3.5
gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens] 29 3.5
gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens] 29 3.5
gi|119220596 helios isoform 1 [Homo sapiens] 29 3.5
gi|119220592 helios isoform 2 [Homo sapiens] 29 3.5
gi|239749851 PREDICTED: similar to hCG2040565 [Homo sapiens] 29 4.6
>gi|9910354 THAP domain containing 10 [Homo sapiens]
Length = 257
Score = 530 bits (1365), Expect = e-151
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MPARCVAAHCGNTTKSGKSLFRFPKDRAVRLLWDRFVRGCRADWYGGNDRSVICSDHFAP 60
MPARCVAAHCGNTTKSGKSLFRFPKDRAVRLLWDRFVRGCRADWYGGNDRSVICSDHFAP
Sbjct: 1 MPARCVAAHCGNTTKSGKSLFRFPKDRAVRLLWDRFVRGCRADWYGGNDRSVICSDHFAP 60
Query: 61 ACFDVSSVIQKNLRFSQRLRLVAGAVPTLHRVPAPAPKRGEEGDQAGRLDTRGELQAARH 120
ACFDVSSVIQKNLRFSQRLRLVAGAVPTLHRVPAPAPKRGEEGDQAGRLDTRGELQAARH
Sbjct: 61 ACFDVSSVIQKNLRFSQRLRLVAGAVPTLHRVPAPAPKRGEEGDQAGRLDTRGELQAARH 120
Query: 121 SEAAPGPVSCTRPRAGKQAAASQITCENELVQTQPHADNPSNTVTSVPTHCEEGPVHKST 180
SEAAPGPVSCTRPRAGKQAAASQITCENELVQTQPHADNPSNTVTSVPTHCEEGPVHKST
Sbjct: 121 SEAAPGPVSCTRPRAGKQAAASQITCENELVQTQPHADNPSNTVTSVPTHCEEGPVHKST 180
Query: 181 QISLKRPRHRSVGIQAKVKAFGKRLCNATTQTEELWSRTSSLFDIYSSDSETDTDWDIKS 240
QISLKRPRHRSVGIQAKVKAFGKRLCNATTQTEELWSRTSSLFDIYSSDSETDTDWDIKS
Sbjct: 181 QISLKRPRHRSVGIQAKVKAFGKRLCNATTQTEELWSRTSSLFDIYSSDSETDTDWDIKS 240
Query: 241 EQSDLSYMAVQVKEETC 257
EQSDLSYMAVQVKEETC
Sbjct: 241 EQSDLSYMAVQVKEETC 257
>gi|13899259 THAP domain containing, apoptosis associated protein
2 [Homo sapiens]
Length = 228
Score = 45.8 bits (107), Expect = 4e-05
Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 1 MPARCVAAHCGNTTKS--GKSLFRFPKDRAVRLLWDRFVRGCRADWYGGNDRSVICSDHF 58
MP C AA C T S RFP D R W R VR R ++ G + +CS HF
Sbjct: 1 MPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWVRLVR--RKNFVPGK-HTFLCSKHF 57
Query: 59 APACFDVSSVIQKNLRFSQRLRLVAGAVPTL 89
+CFD++ Q RL AVPT+
Sbjct: 58 EASCFDLT---------GQTRRLKMDAVPTI 79
>gi|42734379 THAP domain containing, apoptosis associated protein 3
[Homo sapiens]
Length = 175
Score = 44.3 bits (103), Expect = 1e-04
Identities = 42/162 (25%), Positives = 61/162 (37%), Gaps = 18/162 (11%)
Query: 1 MPARCVAAHCGNTTKSGK---SLFRFPKDRAVRLLWDRFVRGCRADWYGGNDRSVICSDH 57
MP C A C N S + + RFP R L +V + +VICS+H
Sbjct: 1 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELL--KEWVLNIGRGNFKPKQHTVICSEH 58
Query: 58 FAPACFDVSSVIQKNLRFSQRLRLVAGAVPTLHRVPAPAPKRGEEGDQAGRLDTRGELQA 117
F P CF F R L AVPT+ P + E D A RG +
Sbjct: 59 FRPECFSA---------FGNRKNLKHNAVPTVFAFQDPTQQVRENTDPASE---RGNASS 106
Query: 118 ARHSEAAP-GPVSCTRPRAGKQAAASQITCENELVQTQPHAD 158
++ + +P AG+ + + E +Q P+A+
Sbjct: 107 SQKEKTSPCRSQVLPEAGAGEDSPGRNMDTALEELQLPPNAE 148
>gi|56788351 THAP domain containing 7 isoform 2 [Homo sapiens]
Length = 309
Score = 37.0 bits (84), Expect = 0.017
Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 17/99 (17%)
Query: 1 MPARCVAAHC-----GNTTKSGKSLFRFPK-DRAVRLLW----DRFVRGCRADWYGGNDR 50
MP C AA C T G S R PK D R LW R + W ++
Sbjct: 1 MPRHCSAAGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEY 60
Query: 51 SVICSDHFAPACFDVSSVIQKNLRFSQRLRLVAGAVPTL 89
CS HF CF++ + S RL GAVPT+
Sbjct: 61 IYFCSKHFEEDCFELVGI-------SGYHRLKEGAVPTI 92
>gi|56788349 THAP domain containing 7 isoform 1 [Homo sapiens]
Length = 309
Score = 37.0 bits (84), Expect = 0.017
Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 17/99 (17%)
Query: 1 MPARCVAAHC-----GNTTKSGKSLFRFPK-DRAVRLLW----DRFVRGCRADWYGGNDR 50
MP C AA C T G S R PK D R LW R + W ++
Sbjct: 1 MPRHCSAAGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEY 60
Query: 51 SVICSDHFAPACFDVSSVIQKNLRFSQRLRLVAGAVPTL 89
CS HF CF++ + S RL GAVPT+
Sbjct: 61 IYFCSKHFEEDCFELVGI-------SGYHRLKEGAVPTI 92
>gi|194440668 THAP domain containing 5 isoform 1 [Homo sapiens]
Length = 395
Score = 34.7 bits (78), Expect = 0.084
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 1 MPARCVAAHC----GNTTKSGK-SLFRFPKDRAVRLLWDRFVRGCRADWYGGNDRSVICS 55
MP C A C G K K S + FP RL +++++ + D + + +CS
Sbjct: 1 MPRYCAAICCKNRRGRNNKDRKLSFYPFPLHDKERL--EKWLKNMKRDSWVPSKYQFLCS 58
Query: 56 DHFAPACFDVSSVIQKNLRFSQRLRLVAGAVPTLHRVP 93
DHF P D I+ +R+ L AVPT+ +P
Sbjct: 59 DHFTPDSLD----IRWGIRY-----LKQTAVPTIFSLP 87
>gi|55749480 syndecan 1 precursor [Homo sapiens]
Length = 310
Score = 32.7 bits (73), Expect = 0.32
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 102 EGDQAGRLDTRGELQ---AARHSEAAPGPVSCTRPRAGKQAAASQITCENELVQTQPHAD 158
EG + G E++ AR EA P P T+ QA+ + T E + PH D
Sbjct: 97 EGPKEGEAVVLPEVEPGLTAREQEATPRPRETTQLPTTHQASTTTATTAQEPATSHPHRD 156
Query: 159 -NPSNTVTSVPTHCEEGPVH 177
P + TS P + +H
Sbjct: 157 MQPGHHETSTPAGPSQADLH 176
>gi|29568086 syndecan 1 precursor [Homo sapiens]
Length = 310
Score = 32.7 bits (73), Expect = 0.32
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 102 EGDQAGRLDTRGELQ---AARHSEAAPGPVSCTRPRAGKQAAASQITCENELVQTQPHAD 158
EG + G E++ AR EA P P T+ QA+ + T E + PH D
Sbjct: 97 EGPKEGEAVVLPEVEPGLTAREQEATPRPRETTQLPTTHQASTTTATTAQEPATSHPHRD 156
Query: 159 -NPSNTVTSVPTHCEEGPVH 177
P + TS P + +H
Sbjct: 157 MQPGHHETSTPAGPSQADLH 176
>gi|22749337 THAP domain containing 8 [Homo sapiens]
Length = 274
Score = 32.3 bits (72), Expect = 0.42
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 1 MPARCVAAHCGNTT------KSGKSLFRFPKDRAVRL-LWDRFVRGCRADWYGGNDRSVI 53
MP C A +C NT S ++FP RL W + + GC W + +
Sbjct: 1 MPKYCRAPNCSNTAGRLGADNRPVSFYKFPLKDGPRLQAWLQHM-GCE-HWVPSCHQH-L 57
Query: 54 CSDHFAPACF 63
CS+HF P+CF
Sbjct: 58 CSEHFTPSCF 67
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 30.8 bits (68), Expect = 1.2
Identities = 26/104 (25%), Positives = 35/104 (33%), Gaps = 4/104 (3%)
Query: 84 GAVPTLHRVPAPAPKRGEEGDQAGRLDTRGELQAARHSEAAPGPVSCTRPRAGKQA-AAS 142
G+ P + A G A +GE AA EA PV P G+ A S
Sbjct: 62 GSAPAADKEEPAAAGSGAASPSAAE---KGEPAAAAAPEAGASPVEKEAPAEGEAAEPGS 118
Query: 143 QITCENELVQTQPHADNPSNTVTSVPTHCEEGPVHKSTQISLKR 186
E E +P + P+ E P K + S K+
Sbjct: 119 PTAAEGEAASAASSTSSPKAEDGATPSPSNETPKKKKKRFSFKK 162
>gi|83921602 solute carrier family 38, member 10 isoform a [Homo
sapiens]
Length = 1119
Score = 30.8 bits (68), Expect = 1.2
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 100 GEEGDQAG-RLDTRGELQAARHSEAAPGPVSCTRPRAGKQAAASQ 143
GE+G Q G RLD G L+ + PVS +PR G+ AA +
Sbjct: 967 GEQGGQQGHRLDHGGHLEMRKARGGDHVPVSHEQPRGGEDAAVQE 1011
>gi|154744870 zinc finger protein 574 [Homo sapiens]
Length = 896
Score = 30.8 bits (68), Expect = 1.2
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
Query: 94 APAPKRGEEGDQAGRLDTRGELQA--ARHSEAAPGPVSCTRPRAGKQAAASQITCENELV 151
A AP+R E G ++ + LQA A H+ A PG V P A + A++ +
Sbjct: 661 AQAPRRFECGTCGKKVGSAARLQAHEAAHAAAGPGEVLAKEPPAPRAPRATRAPVASPAA 720
Query: 152 QTQPHADNPSNTVTSVPTHCEEGPVHKSTQISLKRPRHRSVG 193
+P+ C E ST+ SL+ R G
Sbjct: 721 LGSTATASPAAPARRRGLECSECKKLFSTETSLQVHRRIHTG 762
>gi|46198301 hypothetical protein LOC79081 [Homo sapiens]
Length = 263
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 97 PKRGEEGDQAGRLDTRGELQAARHSEAAPGPVSCTRPRAG----KQAAASQITCENELVQ 152
P EG + + T +++ SEA PG C RPRA Q A Q TC++ V+
Sbjct: 174 PPNSFEGAEEEAVQTPAGVESGAASEA-PGGRGCDRPRADHAAPPQEAGVQCTCQHYTVR 232
Query: 153 TQPHADNPSN 162
+ P++
Sbjct: 233 EEAQKTPPAD 242
>gi|5031633 FERM, RhoGEF, and pleckstrin domain protein 1 isoform 1
[Homo sapiens]
Length = 1045
Score = 30.4 bits (67), Expect = 1.6
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 124 APGPVSCTRPRAGKQAAASQITCENELVQTQPHADNPSNTVTSVPTHCEEGPVHKSTQIS 183
+PG SC R + K +A + + + P + ++ S PT EE V TQ S
Sbjct: 403 SPGGQSCRRGKEPKVSAGEPGSHPSPAPRRSPAGNKQADGAASAPTEEEEEVVKDRTQQS 462
Query: 184 LKRPRHRSVG 193
+P S G
Sbjct: 463 KPQPPQPSTG 472
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 30.0 bits (66), Expect = 2.1
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 90 HRVPAPAPKRGEEGDQAGRLDTRGELQAARHSEAAPGPVSCTRPRAGKQAAASQITCENE 149
H P+P + QA L + + A H+ AP P S T P + Q+ + +
Sbjct: 1165 HPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMT-PASNTQSPQNSFPAAQQ 1223
Query: 150 LVQT------QPHADNPSNTVTSVPTHCEEGPV 176
V T QP NP + H + G V
Sbjct: 1224 TVFTIHPSHVQPAYTNPPHMAHVPQAHVQSGMV 1256
>gi|4885279 GLI family zinc finger 1 isoform 1 [Homo sapiens]
Length = 1106
Score = 29.6 bits (65), Expect = 2.7
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 133 PRAGKQAAASQITCENELVQTQPHADNPSNTVTSVPTHCEEGPVHKSTQISLKRPRHRSV 192
P G + + C + + PH+ P+ S C EGP+ S + ++K + R++
Sbjct: 28 PSVGTEGLSGPPFCHQANLMSGPHSYGPARETNS----CTEGPLFSSPRSAVKLTKKRAL 83
Query: 193 GI 194
I
Sbjct: 84 SI 85
>gi|8922446 THAP domain containing, apoptosis associated protein 1
isoform 1 [Homo sapiens]
Length = 213
Score = 29.6 bits (65), Expect = 2.7
Identities = 30/102 (29%), Positives = 38/102 (37%), Gaps = 15/102 (14%)
Query: 1 MPARCVAAHCGNTTKSGK--SLFRFPKDR-AVRLLWDRFVRGCRADWYGGNDRSVICSDH 57
M C A C N K S +FP R ++ W+ VR + S ICS+H
Sbjct: 1 MVQSCSAYGCKNRYDKDKPVSFHKFPLTRPSLCKEWEAAVRRKN---FKPTKYSSICSEH 57
Query: 58 FAPACFDVSSVIQKNLRFSQRLRLVAGAVPTLHRVPAPAPKR 99
F P CF R L AVPT+ P K+
Sbjct: 58 FTPDCFK---------RECNNKLLKENAVPTIFLCTEPHDKK 90
>gi|113423021 PREDICTED: similar to hCG1820409 [Homo sapiens]
Length = 578
Score = 29.6 bits (65), Expect = 2.7
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 89 LHRVPAPAPKRGEEGDQAG-----RLDTRGELQAARHSEAAPGPVSCTRPRAGKQ----A 139
L +P P+RG GD AG R RGE A + +A P +P AG Q +
Sbjct: 98 LGSLPPRLPRRGGRGDSAGGGGRDREAGRGE---ANPAHSARSPERPRKPEAGAQDFRDS 154
Query: 140 AASQITCENELVQTQPHADNPSNTVTSV 167
+ C+ V+ PH P S+
Sbjct: 155 ERTDRDCQPLRVKDSPHPCPPPGAPNSL 182
>gi|113422497 PREDICTED: similar to hCG1820409 [Homo sapiens]
Length = 578
Score = 29.6 bits (65), Expect = 2.7
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 89 LHRVPAPAPKRGEEGDQAG-----RLDTRGELQAARHSEAAPGPVSCTRPRAGKQ----A 139
L +P P+RG GD AG R RGE A + +A P +P AG Q +
Sbjct: 98 LGSLPPRLPRRGGRGDSAGGGGRDREAGRGE---ANPAHSARSPERPRKPEAGAQDFRDS 154
Query: 140 AASQITCENELVQTQPHADNPSNTVTSV 167
+ C+ V+ PH P S+
Sbjct: 155 ERTDRDCQPLRVKDSPHPCPPPGAPNSL 182
>gi|195539337 S-adenosylhomocysteine hydrolase-like 2 isoform b
[Homo sapiens]
Length = 610
Score = 29.3 bits (64), Expect = 3.5
Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 126 GPVSCTRPRAGKQAAASQITCENELVQTQPHAD------NPSNTVTSVPTHCEEGPVHKS 179
GP + P AGK AS + + Q Q H D +P TVT P ++
Sbjct: 68 GPAAALSPAAGKVPQASAMKRSDPHHQHQRHRDGGEALVSPDGTVTEAPRTVKKIQFADQ 127
Query: 180 TQISLKRPRHRSVGIQAKVKAFGKRLCNATTQTEELWSRTSSLFDIYSSDSETD-TDWDI 238
Q KRP G+R + + S +S+ SSD ET D
Sbjct: 128 KQEFNKRP-----------TKIGRRSLSRSISQSSTDSYSSAASYTDSSDDETSPRDKQQ 176
Query: 239 KSEQSDLSYMAVQVKE 254
K+ + + +K+
Sbjct: 177 KNSKGSSDFCVKNIKQ 192
>gi|24308043 S-adenosylhomocysteine hydrolase-like 2 isoform a [Homo
sapiens]
Length = 611
Score = 29.3 bits (64), Expect = 3.5
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 17/136 (12%)
Query: 126 GPVSCTRPRAGKQAAASQITCENELVQTQPHAD------NPSNTVTSVPTHCEEGPVHKS 179
GP + P AGK AS + + Q Q H D +P TVT P V K
Sbjct: 68 GPAAALSPAAGKVPQASAMKRSDPHHQHQRHRDGGEALVSPDGTVTEAPR-----TVKKQ 122
Query: 180 TQISLKRPRHRSVGIQAKVKAFGKRLCNATTQTEELWSRTSSLFDIYSSDSETD-TDWDI 238
Q + ++ + ++ + + ++T + +S +S D SSD ET D
Sbjct: 123 IQFADQKQEFNKRPTKIGRRSLSRSISQSSTDS---YSSAASYTD--SSDDETSPRDKQQ 177
Query: 239 KSEQSDLSYMAVQVKE 254
K+ + + +K+
Sbjct: 178 KNSKGSSDFCVKNIKQ 193
>gi|40354197 THAP domain containing 11 [Homo sapiens]
Length = 314
Score = 29.3 bits (64), Expect = 3.5
Identities = 56/280 (20%), Positives = 102/280 (36%), Gaps = 38/280 (13%)
Query: 5 CVAAHCGNTTKSGKSL--FRFPKDRAVRLLWDR-----FVRGCRADWYGGNDRSVICSDH 57
C C N + K+L + FPKD +R LW + V GC + + +CS H
Sbjct: 6 CCVPGCYNNSHRDKALHFYTFPKDAELRRLWLKNVSRAGVSGCFSTFQPTTGHR-LCSVH 64
Query: 58 F----------APACFDVSSVIQKNLRFSQRLRLVAGAVPTLHRVPAPAPKRGEEGDQAG 107
F P F + V ++ + R AGA R ++ ++ Q
Sbjct: 65 FQGGRKTYTVRVPTIFPLRGVNERKV-----ARRPAGAAAARRRQQQQQQQQQQQQQQQQ 119
Query: 108 RLDTRGELQAARHS--EAAPGPVSCTRPRAGKQAAASQITCENELVQTQPHADNPSNTVT 165
+ + + Q + S A+ + +P +AA +T + + +Q +T
Sbjct: 120 QQQQQQQQQQQQQSSPSASTAQTAQLQPNLVSASAAVLLTLQATVDSSQAPGSVQPAPIT 179
Query: 166 SVPTHCEEGPVHKSTQISLKRPRHRSVG-----IQAKVKAFGKRLCNATTQT----EELW 216
PT + P+ + Q+ + +QA C Q EE +
Sbjct: 180 --PTGEDVKPIDLTVQVEFAAAEGAAAAAAASELQAATAGLEAAECPMGPQLVVVGEEGF 237
Query: 217 SRTSS--LFDIYSSDSETDTDWDIKSEQSDLSYMAVQVKE 254
T S + + S +E + + ++ L+ M V++KE
Sbjct: 238 PDTGSDHSYSLSSGTTEEELLRKLNEQRDILALMEVKMKE 277
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 29.3 bits (64), Expect = 3.5
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 94 APAPKRGEEGDQAGRLDTRGELQAARHSEAAPGPVSCTRPRAGKQAAASQITCENELVQT 153
+P+P G G+ +L A R ++ P+ P +Q T L+ T
Sbjct: 674 SPSPPTQHTGQPPGQPSAPSQLSAPRRYSSSLSPIQA--PNHPPPQPPTQAT---PLMHT 728
Query: 154 QPHADNPSNTVTSVPTHCEEGPVHKSTQ 181
+P++ P N + H E P H Q
Sbjct: 729 KPNSQGPPNPMALPSEHGLEQPSHTPPQ 756
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 29.3 bits (64), Expect = 3.5
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 94 APAPKRGEEGDQAGRLDTRGELQAARHSEAAPGPVSCTRPRAGKQAAASQITCENELVQT 153
+P+P G G+ +L A R ++ P+ P +Q T L+ T
Sbjct: 596 SPSPPTQHTGQPPGQPSAPSQLSAPRRYSSSLSPIQA--PNHPPPQPPTQAT---PLMHT 650
Query: 154 QPHADNPSNTVTSVPTHCEEGPVHKSTQ 181
+P++ P N + H E P H Q
Sbjct: 651 KPNSQGPPNPMALPSEHGLEQPSHTPPQ 678
>gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens]
Length = 1137
Score = 29.3 bits (64), Expect = 3.5
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 155 PHADNPSNTVTSVPTHCEEG-PVHKSTQISLKRPRHRSVGIQAK-----VKAFGKRLCNA 208
PH+ NPS+ +S PTH P I R R + K + FG +A
Sbjct: 1004 PHSSNPSSLPSSPPTHNHNSVPFSNFGPIGTPDNRDRRTADRWKTDKPAMGGFGIDYLSA 1063
Query: 209 TTQTEELWSRTSS 221
T+ +E W + S+
Sbjct: 1064 TSSSESSWHQAST 1076
>gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens]
Length = 1049
Score = 29.3 bits (64), Expect = 3.5
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 155 PHADNPSNTVTSVPTHCEEG-PVHKSTQISLKRPRHRSVGIQAK-----VKAFGKRLCNA 208
PH+ NPS+ +S PTH P I R R + K + FG +A
Sbjct: 916 PHSSNPSSLPSSPPTHNHNSVPFSNFGPIGTPDNRDRRTADRWKTDKPAMGGFGIDYLSA 975
Query: 209 TTQTEELWSRTSS 221
T+ +E W + S+
Sbjct: 976 TSSSESSWHQAST 988
>gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens]
Length = 1091
Score = 29.3 bits (64), Expect = 3.5
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 155 PHADNPSNTVTSVPTHCEEG-PVHKSTQISLKRPRHRSVGIQAK-----VKAFGKRLCNA 208
PH+ NPS+ +S PTH P I R R + K + FG +A
Sbjct: 958 PHSSNPSSLPSSPPTHNHNSVPFSNFGPIGTPDNRDRRTADRWKTDKPAMGGFGIDYLSA 1017
Query: 209 TTQTEELWSRTSS 221
T+ +E W + S+
Sbjct: 1018 TSSSESSWHQAST 1030
>gi|119220596 helios isoform 1 [Homo sapiens]
Length = 526
Score = 29.3 bits (64), Expect = 3.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 138 QAAASQITCENELVQTQPHADNPSNTVTSVPTHCEEGPVHKSTQISLK 185
+A ITC+NEL + H++ + +S P P H ++ S+K
Sbjct: 4 EAIDGYITCDNELSPEREHSNMAIDLTSSTPNGQHASPSHMTSTNSVK 51
>gi|119220592 helios isoform 2 [Homo sapiens]
Length = 500
Score = 29.3 bits (64), Expect = 3.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 138 QAAASQITCENELVQTQPHADNPSNTVTSVPTHCEEGPVHKSTQISLK 185
+A ITC+NEL + H++ + +S P P H ++ S+K
Sbjct: 4 EAIDGYITCDNELSPEREHSNMAIDLTSSTPNGQHASPSHMTSTNSVK 51
>gi|239749851 PREDICTED: similar to hCG2040565 [Homo sapiens]
Length = 171
Score = 28.9 bits (63), Expect = 4.6
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 104 DQAGRLDTRGELQAARHSEAAPGPVSCTRPRAGKQAAASQ----ITCENELVQ--TQPHA 157
+Q R G+ Q +R + A+P + R R+G +AA Q E + + P
Sbjct: 11 EQGERAMNHGQWQKSRKALASPVTFTDDRSRSGCEAAVEQNDEKTGPEEDAIACCILPQR 70
Query: 158 DNPSNTVTSVPTHCEEGPVHKSTQISLKRPRHRSVGIQAK 197
P+ +VP EG +P+ RS+ + AK
Sbjct: 71 LRPTAVAATVPKRKAEGDAKGDKAKVKDKPQRRSMRLSAK 110
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.129 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,426,084
Number of Sequences: 37866
Number of extensions: 478692
Number of successful extensions: 1781
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1765
Number of HSP's gapped (non-prelim): 58
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.