Guide to the Human Genome
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Name: THAP3 Sequence: fasta or formatted (175aa) NCBI GI: 42734379
Description:

THAP domain containing, apoptosis associated protein 3

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         14           2
 C cysteine            3.4          6           2
 D aspartate           2.3          4           1
 E glutamate           9.1         16           2
 F phenylalanine       5.7         10           1
 G glycine             5.1          9           1
 H histidine           2.9          5           1
 I isoleucine          1.1          2           1
 K lysine              5.7         10           1
 L leucine             6.9         12           2
 M methionine          1.7          3           1
 N asparagine          6.9         12           1
 P proline             8.0         14           2
 Q glutamine           5.7         10           2
 R arginine            8.0         14           2
 S serine              8.6         15           3
 T threonine           4.6          8           1
 V valine              4.6          8           1
 W tryptophan          1.1          2           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   THAP domain containing, apoptosis associated protein... 
THAP1                 0.211   THAP domain containing, apoptosis associated protein ...
THAP2                 0.164   THAP domain containing, apoptosis associated protein...
THAP5                 0.132   THAP domain containing 5 isoform 1 
THAP8                 0.117   THAP domain containing 8 
THAP4                 0.109   THAP domain containing 4 
THAP7                 0.085   THAP domain containing 7 isoform 2 
THAP7                 0.085   THAP domain containing 7 isoform 1 
THAP9                 0.085   THAP domain containing 9 
THAP6                 0.076   THAP domain containing 6 
THAP10                0.056   THAP domain containing 10 
THAP5                 0.050   THAP domain containing 5 isoform 2 
LOC100291948          0.015   PREDICTED: hypothetical protein XP_002345897 
LOC100291512          0.015   PREDICTED: hypothetical protein XP_002346753 
LOC100288180          0.015   PREDICTED: hypothetical protein XP_002342610 
LOC100291071          0.012   PREDICTED: hypothetical protein XP_002346951 
LOC100287198          0.012   PREDICTED: hypothetical protein XP_002342815 
LOC100287198          0.012   PREDICTED: hypothetical protein 
IPO8                  0.012   importin 8 
RRP1                  0.012   ribosomal RNA processing 1 homolog 
REEP2                 0.012   receptor accessory protein 2 
ZNF200                0.009   zinc finger protein 200 isoform 3 
ZNF200                0.009   zinc finger protein 200 isoform 3 
ZNF200                0.009   zinc finger protein 200 isoform 3 
FAM117B               0.009   amyotrophic lateral sclerosis 2 (juvenile) chromosom...
RAB11FIP1             0.009   RAB11 family interacting protein 1 isoform 3 
RAB11FIP1             0.009   RAB11 family interacting protein 1 isoform 1 
ASMTL                 0.009   acetylserotonin O-methyltransferase-like 
LOC100293275          0.009   PREDICTED: hypothetical protein 
LOC100129887          0.009   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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