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Search of human proteins with 95147342
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
(2881 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 5786 0.0
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 2594 0.0
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 2282 0.0
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 1918 0.0
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 523 e-148
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 520 e-147
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 505 e-142
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 505 e-142
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 505 e-142
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 505 e-142
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 496 e-139
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 402 e-111
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 402 e-111
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 394 e-109
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 363 1e-99
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 362 2e-99
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 362 2e-99
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 357 1e-97
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 354 6e-97
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 354 6e-97
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 354 6e-97
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 354 6e-97
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 354 8e-97
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 354 8e-97
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 354 8e-97
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 269 3e-71
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 268 4e-71
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 268 4e-71
gi|4557565 excision repair cross-complementing rodent repair def... 245 4e-64
gi|58219008 RAD26L hypothetical protein [Homo sapiens] 226 3e-58
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 5786 bits (15011), Expect = 0.0
Identities = 2881/2881 (100%), Positives = 2881/2881 (100%)
Query: 1 MTDPMMDFFDDANLFGETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQGTP 60
MTDPMMDFFDDANLFGETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQGTP
Sbjct: 1 MTDPMMDFFDDANLFGETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQGTP 60
Query: 61 THQKMTDFEQLNQFDSIKFHHVNQSFGSPAEHVLSPHSQFNCSPIHPQNQPNGLFPDVSD 120
THQKMTDFEQLNQFDSIKFHHVNQSFGSPAEHVLSPHSQFNCSPIHPQNQPNGLFPDVSD
Sbjct: 61 THQKMTDFEQLNQFDSIKFHHVNQSFGSPAEHVLSPHSQFNCSPIHPQNQPNGLFPDVSD 120
Query: 121 GSPMWGHQTATTISNQNGSPFHQQGHSHSMHQNKSFVAHHDFALFQANEQQTQCTSLRSQ 180
GSPMWGHQTATTISNQNGSPFHQQGHSHSMHQNKSFVAHHDFALFQANEQQTQCTSLRSQ
Sbjct: 121 GSPMWGHQTATTISNQNGSPFHQQGHSHSMHQNKSFVAHHDFALFQANEQQTQCTSLRSQ 180
Query: 181 QNRNNLNPGQNSLSQSKNFMNVSGPHRVNVNHPPQMTNASNSQQSISMQQFSQTSNPSAH 240
QNRNNLNPGQNSLSQSKNFMNVSGPHRVNVNHPPQMTNASNSQQSISMQQFSQTSNPSAH
Sbjct: 181 QNRNNLNPGQNSLSQSKNFMNVSGPHRVNVNHPPQMTNASNSQQSISMQQFSQTSNPSAH 240
Query: 241 FHKCSSHQEGNFNGPSPNMTSCSVSNSQQFSSHYSFSSNHISPNSLLQSSAVLASNHTNQ 300
FHKCSSHQEGNFNGPSPNMTSCSVSNSQQFSSHYSFSSNHISPNSLLQSSAVLASNHTNQ
Sbjct: 241 FHKCSSHQEGNFNGPSPNMTSCSVSNSQQFSSHYSFSSNHISPNSLLQSSAVLASNHTNQ 300
Query: 301 TLSDFTGSNSFSPHRGIKQESTQHILNPNTSLNSNNFQILHSSHPQGNYSNSKLSPVHMN 360
TLSDFTGSNSFSPHRGIKQESTQHILNPNTSLNSNNFQILHSSHPQGNYSNSKLSPVHMN
Sbjct: 301 TLSDFTGSNSFSPHRGIKQESTQHILNPNTSLNSNNFQILHSSHPQGNYSNSKLSPVHMN 360
Query: 361 FPDPVDSGTQMGHFNDHVETNGFSSLEENLLHQVESQTEPFTGLDPEDLLQEGLLPHFDE 420
FPDPVDSGTQMGHFNDHVETNGFSSLEENLLHQVESQTEPFTGLDPEDLLQEGLLPHFDE
Sbjct: 361 FPDPVDSGTQMGHFNDHVETNGFSSLEENLLHQVESQTEPFTGLDPEDLLQEGLLPHFDE 420
Query: 421 STFGQDNSSHILDHDLDRQFTSHLVTRPSDMAQTQLQSQARSWHSSFSNHQHLHDRNHLC 480
STFGQDNSSHILDHDLDRQFTSHLVTRPSDMAQTQLQSQARSWHSSFSNHQHLHDRNHLC
Sbjct: 421 STFGQDNSSHILDHDLDRQFTSHLVTRPSDMAQTQLQSQARSWHSSFSNHQHLHDRNHLC 480
Query: 481 LQRQPPSSKKSDGSGTYTKLQNTQVRVMSEKKQRKKVESESKQEKANRIISEAIAKAKER 540
LQRQPPSSKKSDGSGTYTKLQNTQVRVMSEKKQRKKVESESKQEKANRIISEAIAKAKER
Sbjct: 481 LQRQPPSSKKSDGSGTYTKLQNTQVRVMSEKKQRKKVESESKQEKANRIISEAIAKAKER 540
Query: 541 GERNIPRVMSPENFPTASVEGKEEKKGRRMKSKPKDKDSKKTKTCSKLKEKTKIGKLIIT 600
GERNIPRVMSPENFPTASVEGKEEKKGRRMKSKPKDKDSKKTKTCSKLKEKTKIGKLIIT
Sbjct: 541 GERNIPRVMSPENFPTASVEGKEEKKGRRMKSKPKDKDSKKTKTCSKLKEKTKIGKLIIT 600
Query: 601 LGKKQKRKNESSDEISDAEQMPQHTLKDQDSQKRRSNRQIKRKKYAEDIEGKQSEEEVKG 660
LGKKQKRKNESSDEISDAEQMPQHTLKDQDSQKRRSNRQIKRKKYAEDIEGKQSEEEVKG
Sbjct: 601 LGKKQKRKNESSDEISDAEQMPQHTLKDQDSQKRRSNRQIKRKKYAEDIEGKQSEEEVKG 660
Query: 661 SMKIKKNSAPLPGEQPLQLFVENPSEEDAAIVDKILSSRTVKKEISPGVMIDTEEFFVKY 720
SMKIKKNSAPLPGEQPLQLFVENPSEEDAAIVDKILSSRTVKKEISPGVMIDTEEFFVKY
Sbjct: 661 SMKIKKNSAPLPGEQPLQLFVENPSEEDAAIVDKILSSRTVKKEISPGVMIDTEEFFVKY 720
Query: 721 KNYSYLHCEWATEEQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLE 780
KNYSYLHCEWATEEQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLE
Sbjct: 721 KNYSYLHCEWATEEQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLE 780
Query: 781 VSFCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRPDTRRLDRP 840
VSFCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRPDTRRLDRP
Sbjct: 781 VSFCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRPDTRRLDRP 840
Query: 841 PSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLY 900
PSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLY
Sbjct: 841 PSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLY 900
Query: 901 EILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQG 960
EILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQG
Sbjct: 901 EILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQG 960
Query: 961 RIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEH 1020
RIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEH
Sbjct: 961 RIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEH 1020
Query: 1021 KVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLR 1080
KVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLR
Sbjct: 1021 KVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLR 1080
Query: 1081 RLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMMEL 1140
RLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMMEL
Sbjct: 1081 RLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMMEL 1140
Query: 1141 RKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHK 1200
RKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHK
Sbjct: 1141 RKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHK 1200
Query: 1201 VLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRA 1260
VLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRA
Sbjct: 1201 VLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRA 1260
Query: 1261 GGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRA 1320
GGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRA
Sbjct: 1261 GGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRA 1320
Query: 1321 SLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDID 1380
SLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDID
Sbjct: 1321 SLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDID 1380
Query: 1381 QILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIEAISGR 1440
QILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIEAISGR
Sbjct: 1381 QILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIEAISGR 1440
Query: 1441 NSLVIDTPRIRKQTRPFSATKDELAELSEAESEGDEKPKLRRPCDRSNGYGRTECFRVEK 1500
NSLVIDTPRIRKQTRPFSATKDELAELSEAESEGDEKPKLRRPCDRSNGYGRTECFRVEK
Sbjct: 1441 NSLVIDTPRIRKQTRPFSATKDELAELSEAESEGDEKPKLRRPCDRSNGYGRTECFRVEK 1500
Query: 1501 NLLVYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKGFIWDLITPT 1560
NLLVYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKGFIWDLITPT
Sbjct: 1501 NLLVYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKGFIWDLITPT 1560
Query: 1561 EDGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQLLQDEGYKKHI 1620
EDGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQLLQDEGYKKHI
Sbjct: 1561 EDGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQLLQDEGYKKHI 1620
Query: 1621 KHHCNKVLLRVRMLYYLKQEVIGNECQKVFDGVDASDIDVWVPEPDHSEVPAEWWDFDAD 1680
KHHCNKVLLRVRMLYYLKQEVIGNECQKVFDGVDASDIDVWVPEPDHSEVPAEWWDFDAD
Sbjct: 1621 KHHCNKVLLRVRMLYYLKQEVIGNECQKVFDGVDASDIDVWVPEPDHSEVPAEWWDFDAD 1680
Query: 1681 KSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYKPA 1740
KSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYKPA
Sbjct: 1681 KSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYKPA 1740
Query: 1741 PAIFKDDIEDDVSSPGDLVIADGDGQLMEGDKVYWPTQSALTTRLRRLITAYQRTNKNRQ 1800
PAIFKDDIEDDVSSPGDLVIADGDGQLMEGDKVYWPTQSALTTRLRRLITAYQRTNKNRQ
Sbjct: 1741 PAIFKDDIEDDVSSPGDLVIADGDGQLMEGDKVYWPTQSALTTRLRRLITAYQRTNKNRQ 1800
Query: 1801 IQQIQPTFSVPTSVMQPIYEEATLNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPD 1860
IQQIQPTFSVPTSVMQPIYEEATLNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPD
Sbjct: 1801 IQQIQPTFSVPTSVMQPIYEEATLNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPD 1860
Query: 1861 RGQFDWTKFRAMARLHKKTDDSLEKYLYAFMSMCRRVCRLPSKEELVDPNIFIQPITEER 1920
RGQFDWTKFRAMARLHKKTDDSLEKYLYAFMSMCRRVCRLPSKEELVDPNIFIQPITEER
Sbjct: 1861 RGQFDWTKFRAMARLHKKTDDSLEKYLYAFMSMCRRVCRLPSKEELVDPNIFIQPITEER 1920
Query: 1921 ASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPVWWECGPHDRDLLIGAAKHGVS 1980
ASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPVWWECGPHDRDLLIGAAKHGVS
Sbjct: 1921 ASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPVWWECGPHDRDLLIGAAKHGVS 1980
Query: 1981 RTDYHILRDPELSFMAAQRNYSQSKMAHSRTSTPLLQQYQVALSASPLTSLPRLLDAKGI 2040
RTDYHILRDPELSFMAAQRNYSQSKMAHSRTSTPLLQQYQVALSASPLTSLPRLLDAKGI
Sbjct: 1981 RTDYHILRDPELSFMAAQRNYSQSKMAHSRTSTPLLQQYQVALSASPLTSLPRLLDAKGI 2040
Query: 2041 ILEEMKVKSENLKEEPQSSEEESMSSVETRTLIKSEPVSPKNGVLPQATGDQKSGGKCET 2100
ILEEMKVKSENLKEEPQSSEEESMSSVETRTLIKSEPVSPKNGVLPQATGDQKSGGKCET
Sbjct: 2041 ILEEMKVKSENLKEEPQSSEEESMSSVETRTLIKSEPVSPKNGVLPQATGDQKSGGKCET 2100
Query: 2101 DRRMVAARTEPLTPNPASKKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSR 2160
DRRMVAARTEPLTPNPASKKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSR
Sbjct: 2101 DRRMVAARTEPLTPNPASKKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSR 2160
Query: 2161 SGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYDEESV 2220
SGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYDEESV
Sbjct: 2161 SGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYDEESV 2220
Query: 2221 ASLSTTQDETQDSFQMNNGTPESAYILQGGYMLAASYWPKDRVMINRLDSICQTVLKGKW 2280
ASLSTTQDETQDSFQMNNGTPESAYILQGGYMLAASYWPKDRVMINRLDSICQTVLKGKW
Sbjct: 2221 ASLSTTQDETQDSFQMNNGTPESAYILQGGYMLAASYWPKDRVMINRLDSICQTVLKGKW 2280
Query: 2281 PSARRSYDANTVASFYTTKLLDSPGAATEYSDPSVPTPPGAGVKEEHDQSTQMSKEGGLK 2340
PSARRSYDANTVASFYTTKLLDSPGAATEYSDPSVPTPPGAGVKEEHDQSTQMSKEGGLK
Sbjct: 2281 PSARRSYDANTVASFYTTKLLDSPGAATEYSDPSVPTPPGAGVKEEHDQSTQMSKEGGLK 2340
Query: 2341 LTFQKQGLAQKRPFDGEDGALGQQQYLTRLRELQSASETSLVNFPKSIPVSGTSIQPTLG 2400
LTFQKQGLAQKRPFDGEDGALGQQQYLTRLRELQSASETSLVNFPKSIPVSGTSIQPTLG
Sbjct: 2341 LTFQKQGLAQKRPFDGEDGALGQQQYLTRLRELQSASETSLVNFPKSIPVSGTSIQPTLG 2400
Query: 2401 ANGVILDNQPIVKKRRGRRKNVEGVDIFFFNRNKPPNHVSLGLTSSQISTGINPALSYTQ 2460
ANGVILDNQPIVKKRRGRRKNVEGVDIFFFNRNKPPNHVSLGLTSSQISTGINPALSYTQ
Sbjct: 2401 ANGVILDNQPIVKKRRGRRKNVEGVDIFFFNRNKPPNHVSLGLTSSQISTGINPALSYTQ 2460
Query: 2461 PQGIPDTESPVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGYVEDLGAFIPRMQLHEGR 2520
PQGIPDTESPVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGYVEDLGAFIPRMQLHEGR
Sbjct: 2461 PQGIPDTESPVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGYVEDLGAFIPRMQLHEGR 2520
Query: 2521 PKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLKDLCRFLKENSEYGVA 2580
PKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLKDLCRFLKENSEYGVA
Sbjct: 2521 PKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLKDLCRFLKENSEYGVA 2580
Query: 2581 PEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSGIAKATAAAAAASATSVSGN 2640
PEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSGIAKATAAAAAASATSVSGN
Sbjct: 2581 PEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSGIAKATAAAAAASATSVSGN 2640
Query: 2641 PLLANGLLPGVDLTTLQALQQNLQNLQSLQVTAGLMGMPTGLPSGGEAKNMAAMFPMLLS 2700
PLLANGLLPGVDLTTLQALQQNLQNLQSLQVTAGLMGMPTGLPSGGEAKNMAAMFPMLLS
Sbjct: 2641 PLLANGLLPGVDLTTLQALQQNLQNLQSLQVTAGLMGMPTGLPSGGEAKNMAAMFPMLLS 2700
Query: 2701 GMAGLPNLLGMGGLLTKPTESGTEDKKGSDSKESEGKTERTESQSSENGGENSVSSSPST 2760
GMAGLPNLLGMGGLLTKPTESGTEDKKGSDSKESEGKTERTESQSSENGGENSVSSSPST
Sbjct: 2701 GMAGLPNLLGMGGLLTKPTESGTEDKKGSDSKESEGKTERTESQSSENGGENSVSSSPST 2760
Query: 2761 SSTAALNTAAAANPLALNPLLLSNILYPGMLLTPGLNLHIPTLSQSNTFDVQNKNSDLGS 2820
SSTAALNTAAAANPLALNPLLLSNILYPGMLLTPGLNLHIPTLSQSNTFDVQNKNSDLGS
Sbjct: 2761 SSTAALNTAAAANPLALNPLLLSNILYPGMLLTPGLNLHIPTLSQSNTFDVQNKNSDLGS 2820
Query: 2821 SKSVEVKEEDSRIKDQEDKGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSEDSDSSNE 2880
SKSVEVKEEDSRIKDQEDKGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSEDSDSSNE
Sbjct: 2821 SKSVEVKEEDSRIKDQEDKGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSEDSDSSNE 2880
Query: 2881 D 2881
D
Sbjct: 2881 D 2881
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 2594 bits (6723), Expect = 0.0
Identities = 1508/3120 (48%), Positives = 1936/3120 (62%), Gaps = 364/3120 (11%)
Query: 1 MTDP-MMDFF-DDANLFGETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQG 58
M DP MM F +D N+F E LEGL + + + + ++ + F L SL+H
Sbjct: 1 MADPGMMSLFGEDGNIFSEGLEGLGECGYPENPVNPMGQQMPIDQGFASLQ-PSLHHPST 59
Query: 59 TPTHQKMTDFEQLNQFDSIKFHHVNQS----FGSPAEHVLSPHSQFNCSPIHPQ------ 108
K+T F+ NQ++ K H ++Q +P + SPHSQ++ P+ PQ
Sbjct: 60 NQNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSNTPGNGLASPHSQYHTPPV-PQVPHGGS 118
Query: 109 -NQPNGLFPDVS---------DGSPMWGHQTATTISNQNGSPFHQQ-------------- 144
G++P + D S MWG + A + +Q +P+ QQ
Sbjct: 119 GGGQMGVYPGMQNERHGQSFVDSSSMWGPR-AVQVPDQIRAPYQQQQPQPQPPQPAPSGP 177
Query: 145 ---GHSHSMHQNKSFVAHHDFALFQANEQQTQCTSLRSQQNRNNLNPGQNSLSQSKNFMN 201
GH M Q S++A DF++ Q + Q Q + + GQ L+Q F+
Sbjct: 178 PAQGHPQHMQQMGSYMARGDFSMQQHGQPQ---------QRMSQFSQGQEGLNQGNPFIA 228
Query: 202 VSGPHRVNVNHPPQMTNASNSQQSISMQQFSQTSNPSAHFHKCSSH--------QEG--- 250
SGP +++H PQ + + S+QQF + + H + Q+G
Sbjct: 229 TSGPG--HLSHVPQQSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQQGAVR 286
Query: 251 ----NFNGPSPNMTSCSVSNSQQFSSH-YSFSSNHISPNSLLQSSAVLASNHT-NQTLSD 304
NF+ S + S +++NS Q+S + YS + + N+ + + L +N NQ++
Sbjct: 287 PQTLNFSSRSQTVPSPTINNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPR 346
Query: 305 FTGSNSFSPHRGIKQESTQHILNPNTSLNSNNFQILHSSHPQGNYSNS------------ 352
+ + F + G + Q ++P+ SLN N Q +H S PQG Y++
Sbjct: 347 YPNAVGFPSNSG-QGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNP 405
Query: 353 ------KLSPVHMNFPDPVDSGTQMGHFNDHVETNGFSSL-EENLLHQVESQTEPFTGLD 405
++ P P V S M H + G + + N+ + Q+ PF G+
Sbjct: 406 AGTPPPQVRPGSAGIPMEVGSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQSRPFIGMS 465
Query: 406 --PEDL-------------------LQEGLLPHFDESTFGQDNSSHILDHDLDRQ---FT 441
P +L +QE L+P + GQ S L Q
Sbjct: 466 SAPRELTGHMRPNGCPGVGLGDPQAIQERLIP--GQQHPGQQPSFQQLPTCPPLQPHPGL 523
Query: 442 SHLVTRPSDMAQTQLQSQARSWHSSFSNHQHLHDRNHLCLQRQPPSSKKSDGSGTYTKLQ 501
H + P Q Q ++ H H + L++ P + G
Sbjct: 524 HHQSSPPHPHHQPWAQLHPSPQNTPQKVPVHQHSPSEPFLEKPVPDMTQVSGPNAQLVKS 583
Query: 502 NTQVRVMSEKKQRKKVESESKQEKANRIISEAIAKAKERGERNIPRVMSPENFPTASVEG 561
+ + + ++ Q+KK K++K N I++E +K G+ + P + + S++G
Sbjct: 584 DDYLPSIEQQPQQKK-----KKKKNNHIVAEDPSKGF--GKDDFPGGVDNQELNRNSLDG 636
Query: 562 KEEKKGRRMKSK----------------------------PKDKDSKKTKTC------SK 587
+E+K ++ +SK PK+ KK KT SK
Sbjct: 637 SQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSK 696
Query: 588 LKEKTKIGKLIITLGKKQKRKNESSDEISDAEQMPQHTL-----KDQDSQKRRSNRQIKR 642
K L KK + E SD ++ P + +D QKRRS+RQ+KR
Sbjct: 697 KSSNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKR 756
Query: 643 KKYAEDIEGKQSEEEVKGSMKIKKNSAPLPGEQPLQLFVENPSEEDAAIVDKILSSRTVK 702
K+Y ED+E K S+EE + ++S + Q V+ + +V+KI+SSR+VK
Sbjct: 757 KRYTEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESVD----AEGPVVEKIMSSRSVK 812
Query: 703 KEISPGVMIDTEEFFVKYKNYSYLHCEWATEEQLLKDKRIQQKIKRFKLRQAQRAHFFAD 762
K+ G ++ EEF+VKYKN+SYLHC+WA+ E L KDKRIQQKIKRFK +Q Q F ++
Sbjct: 813 KQKESGEEVEIEEFYVKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFKAKQGQNK-FLSE 871
Query: 763 MEEEPFNPDYVEVDRVLEVSFCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIE 822
+E+E FNPDYVEVDR+++ + D D GEPV +YLVKWCSLPYEDSTWE ++D+D AKIE
Sbjct: 872 IEDELFNPDYVEVDRIMDFARSTD-DRGEPVTHYLVKWCSLPYEDSTWERRQDIDQAKIE 930
Query: 823 EFEQLQASRPDTRRLDRPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCI 882
EFE+L + P+T R++RPP++ WKK + SR+YKN N+LREYQLEG+NWLLFNWYN RNCI
Sbjct: 931 EFEKLMSREPETERVERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCI 990
Query: 883 LADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSL 942
LADEMGLGKTIQSITFLYEI L GI GPFL+IAPLSTI NWEREFRTWT++NVVVYHGS
Sbjct: 991 LADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVYHGSQ 1050
Query: 943 ISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRL 1002
SR+ IQ YEMYF+D QGR+I+G+Y+F AIITTFEMIL C EL I WRCV+IDEAHRL
Sbjct: 1051 ASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRL 1110
Query: 1003 KNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLK 1062
KN+NCKLLEGLK+M+LEHKVLLTGTPLQNTVEELFSLLHFLEP RFPSE+TFMQEFGDLK
Sbjct: 1111 KNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLK 1170
Query: 1063 TEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLS 1122
TEEQVQKLQAILKPMMLRRLKEDVEK LAPKEETIIEVELTNIQKKYYRAILEKNF+FLS
Sbjct: 1171 TEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLS 1230
Query: 1123 KGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAG 1182
KG GQ NVPNL+NTMMELRKCCNHPYLI GAEEKIL EF++T+N + DF LQAMIQ+AG
Sbjct: 1231 KGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAG 1290
Query: 1183 KLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAID 1242
KLVLIDKLLPK+KAGGH+VLIFSQMVRCLDILEDYLI +RY YERIDGRVRGNLRQAAID
Sbjct: 1291 KLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAID 1350
Query: 1243 RFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVK 1302
RFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ+K+VK
Sbjct: 1351 RFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK 1410
Query: 1303 VYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYG 1362
+YRL+TRNSYEREMFD+ASLKLGLDKAVLQSMSGRE+ G+QQLSKKEIEDLLR+GAYG
Sbjct: 1411 IYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYG 1470
Query: 1363 AIMEEEDEGSKFCEEDIDQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNF 1422
A+M+EEDEGSKFCEEDIDQILLRRT TITIESEG+GSTFAKASFVASGNRTDISLDDPNF
Sbjct: 1471 ALMDEEDEGSKFCEEDIDQILLRRTHTITIESEGKGSTFAKASFVASGNRTDISLDDPNF 1530
Query: 1423 WQKWAKKAEIDIEAISGRNSLVIDTPRIRKQTRPFSATK-DELAELSEAESEGDEKP--K 1479
WQKWAKKAE+DI+A++GRN+LVIDTPR+RKQTR +SA K DEL E S+ ES+ +EKP K
Sbjct: 1531 WQKWAKKAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKEDELMEFSDLESDSEEKPCAK 1590
Query: 1480 LRRPCDRSNGYGRTECFRVEKNLLVYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYC 1539
RRP D+S GY R+ECFRVEKNLLVYGWGRW +ILSHGR+KRQL E DVE ICR +L YC
Sbjct: 1591 PRRPQDKSQGYARSECFRVEKNLLVYGWGRWTDILSHGRYKRQLTEQDVETICRTILVYC 1650
Query: 1540 LVHYRGDEKIKGFIWDLITPTEDGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKA 1599
L HY+GDE IK FIWDLITPT DGQTR L NH GLSAPVPRGRKGKKVK Q++ +Q A
Sbjct: 1651 LNHYKGDENIKSFIWDLITPTADGQTRALVNHSGLSAPVPRGRKGKKVKAQSTQPVVQDA 1710
Query: 1600 EWLRKYNPEQLLQDEGYKKHIKHHCNKVLLRVRMLYYLKQEVIGNECQKVFDGVDASDID 1659
+WL NP+ L Q++ YKKH+KHHCNKVLLRVRMLYYL+QEVIG++ K+ +G D+S+ D
Sbjct: 1711 DWLASCNPDALFQEDSYKKHLKHHCNKVLLRVRMLYYLRQEVIGDQADKILEGADSSEAD 1770
Query: 1660 VWVPEPDHSEVPAEWWDFDADKSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVA 1719
VW+PEP H+EVPA+WWD +ADKSLLIGVFKHGYEKYN++RADPALCFLERVG PD KA+A
Sbjct: 1771 VWIPEPFHAEVPADWWDKEADKSLLIGVFKHGYEKYNSMRADPALCFLERVGMPDAKAIA 1830
Query: 1720 AEQRANDYM---------DGDVEDPEYKPAPAIFKDDIEDDVSSPG----DLVIADGDGQ 1766
AEQR D + D + EDPEYKP FKD+I++ +SP + + G+
Sbjct: 1831 AEQRGTDMLADGGDGGEFDREDEDPEYKPTRTPFKDEIDEFANSPSEDKEESMEIHATGK 1890
Query: 1767 LMEGD----KVYWPTQSALTTRLRRLITAYQRTNKNRQIQQIQPTFSVPTSVMQPIYEEA 1822
E + ++YWP S LTTRLRRLITAYQR+ K +Q++Q + +P E
Sbjct: 1891 HSESNAELGQLYWPNTSTLTTRLRRLITAYQRSYKRQQMRQ-EALMKTDRRRRRPREEVR 1949
Query: 1823 TLNPKMAAKI-ERQQRWTRREEADFYRVVSTFGVVFDPDRGQFDWTKFRAMARLHKKTDD 1881
L + A I E++Q+WTRREEADFYRVVSTFGV+FDP + QFDW +FRA ARL KK+D+
Sbjct: 1950 ALEAEREAIISEKRQKWTRREEADFYRVVSTFGVIFDPVKQQFDWNQFRAFARLDKKSDE 2009
Query: 1882 SLEKYLYAFMSMCRRVCRLPSK--EELVDPNIFIQPITEERASRTLYRIELLRKVREQAL 1939
SLEKY F++MCRRVCR+P K +E D + I+PITEERASRTLYRIELLRK+REQ L
Sbjct: 2010 SLEKYFSCFVAMCRRVCRMPVKPDDEPPDLSSIIEPITEERASRTLYRIELLRKIREQVL 2069
Query: 1940 RHPQLFERLKLCHPNPDLPVWWECGPHDRDLLIGAAKHGVSRTDYHILRDPELSFMAAQR 1999
HPQL ERLKLC P+ DLP WWECG HDRDLL+GAAKHGVSRTDYHIL DPELSF+ A +
Sbjct: 2070 HHPQLGERLKLCQPSLDLPEWWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHK 2129
Query: 2000 NYSQSKMAHSRTS-TPLLQQYQVALSASPLTSLPRLLDAKGIILEEMKVKSENLKEEPQS 2058
N++Q++ A + +S PL + + P+ S + D + +LE+ + K E E P +
Sbjct: 2130 NFAQNRGAGNTSSLNPLAVGF---VQTPPVISSAHIQDER--VLEQAEGKVEE-PENPAA 2183
Query: 2059 SEEESMSSVETRTLIKSEPVSPKNGVLPQATGDQKSGGKCETDRRMVAARTEPLTPNPAS 2118
E+ E T +G ++S +CE + V + + +
Sbjct: 2184 KEKCEGKEEEEET---------------DGSG-KESKQECEAEASSVKNELKGVEVGADT 2227
Query: 2119 KKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSS 2178
+ ++GSE + + + S SS + S
Sbjct: 2228 GSKSISEKGSEEDEEEKLEDD---------------------DKSEESSQPEAGAVSRGK 2266
Query: 2179 SSSTSSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYDEESVASLSTTQDETQDSFQMNN 2238
+ S++S S++ E D Y E+ S++ E +F
Sbjct: 2267 NFDEESNASMSTARDETRDG---------------FYMEDGDPSVAQLLHERTFAF---- 2307
Query: 2239 GTPESAYILQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWPSARRS-YDANTVASFYT 2297
S+WPKDRVMINRLD+IC+ VLKGKWP RR +D + YT
Sbjct: 2308 -----------------SFWPKDRVMINRLDNICEAVLKGKWPVNRRQMFDFQGLIPGYT 2350
Query: 2298 TKLLDSPGAATEYSDPSVPTPPGAGVKEEHDQSTQMSKEGGLKLTFQKQGLAQKRPFDGE 2357
+DSP +++ S+ E+ S Q+SKE L L+ +Q ++R + E
Sbjct: 2351 PTTVDSPLQKRSFAELSMVGQASISGSEDITTSPQLSKEDALNLSVPRQRRRRRRKIEIE 2410
Query: 2358 DGALGQQQYL----TRLRELQSASE-----------------TSLVNFPK---------- 2386
+++ L +LRE Q SE +S NF
Sbjct: 2411 AERAAKRRNLMEMVAQLRESQVVSENGQEKVVDLSKASREATSSTSNFSSLSSKFILPNV 2470
Query: 2387 SIPVS------------GTSIQPTLG-ANGVILDNQPIVKKRRGRRKNVEGVDIFFFNRN 2433
S PVS G S PT NG ++D +P +K+RRGRRKNVEG+D+ F +
Sbjct: 2471 STPVSDAFKTQMELLQAGLSRTPTRHLLNGSLVDGEPPMKRRRGRRKNVEGLDLLFMSHK 2530
Query: 2434 KPPNHVSLGLTSSQISTGINPALSYTQPQGIP-----DTESPVPVINLKDGTRLAGDDAP 2488
+ SL ++++ + + IP D ++ +PVINL+DGTRL G+DAP
Sbjct: 2531 R----TSLSAEDAEVTKAFEEDIETPPTRNIPSPGQLDPDTRIPVINLEDGTRLVGEDAP 2586
Query: 2489 KRKDLEKWLKEHPGYVEDLGAFIPR----MQLHEGRPKQKRHRCRNPNKLDVNSLTGEER 2544
K KDL +WLK HP Y D+ +++P+ + +PKQKRHRCRNPNKLD+N+LTGEER
Sbjct: 2587 KNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPNKLDINTLTGEER 2646
Query: 2545 VQLINRRNARKVGGAFAPPLKDLCRFLKENSEYGVAPEWGDVVKQSGFLPESMYERILTG 2604
V ++N+RN +K+GGA APP+KDL R+L+EN E+ VAP+W D+VKQSGF+PESM++R+LTG
Sbjct: 2647 VPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAPDWTDIVKQSGFVPESMFDRLLTG 2706
Query: 2605 PVVR-EEVSRRGRRPKSGIAKATAAAAAASATSVSGNPLLANGLLPGVDLTTLQALQQNL 2663
PVVR E SRRGRRPKS IA+A AAAAA ++TS NPLL N L G+DLT+L QNL
Sbjct: 2707 PVVRGEGASRRGRRPKSEIARAAAAAAAVASTS-GINPLLVNSLFAGMDLTSL----QNL 2761
Query: 2664 QNLQSLQVTAGLMGMPTGL----PSGGEAKNMAAMFPMLLSGMAGLPNLLGMGGLLTKPT 2719
QNLQSLQ+ AGLMG P GL +GG+AKN AA+ P++L GMAGLPN+ G+GGLL P
Sbjct: 2762 QNLQSLQL-AGLMGFPPGLATAATAGGDAKNPAAVLPLMLPGMAGLPNVFGLGGLLNNPL 2820
Query: 2720 ESGTEDKKGSDSK-ESEGKTERTESQSSENGGEN--------SVSSSPSTSSTAALNTAA 2770
+ T + + S+ E E T + E + +EN EN +VS++ S + + TA
Sbjct: 2821 SAATGNTTTASSQGEPEDSTSKGEEKGNENEDENKDSEKSTDAVSAADSANGSVGAATAP 2880
Query: 2771 A---ANPLALNPLLLS----NILYPGMLLTPGL-NLHIPTLSQSNTFDVQNKNSDLGSSK 2822
A +NPLA NP LLS + YP M L PGL L +P + + +GSS+
Sbjct: 2881 AGLPSNPLAFNPFLLSTMAPGLFYPSMFLPPGLGGLTLPGFPA-----LAGLQNAVGSSE 2935
Query: 2823 SVEV-KEEDSRIKDQEDKGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSEDSDSSNED 2881
K E KD E G++ + + + + + + G + S D +NE+
Sbjct: 2936 EKAADKAEGGPFKDGETLEGSDAEESLDKTAESSLLEDEIAQGEELDSLDGGDEIENNEN 2995
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 2282 bits (5914), Expect = 0.0
Identities = 1266/2259 (56%), Positives = 1540/2259 (68%), Gaps = 252/2259 (11%)
Query: 446 TRPSDMAQTQLQSQARSWHSSFSNHQHLHDRNHLCLQRQPPSSK-KSDGSGTYTKLQNTQ 504
T+P ++ Q QA+ S Q L + LQ Q SS+ S G L ++
Sbjct: 91 TQPVTLSSVQ---QAQIMGPGQSPGQRLSVPVKVVLQPQAGSSQGASSGLSVVKVLSASE 147
Query: 505 VRVMSEK-------------KQRKKVESESKQEKANRIISEAIAKAKERGERNIPRVMSP 551
V +S ++ +++E + KQEKANRI++EAIA+A+ RGE+NIPRV++
Sbjct: 148 VAALSSPASSAPHSGGKTGMEENRRLEHQKKQEKANRIVAEAIARARARGEQNIPRVLNE 207
Query: 552 ENFPTASVEGKEEKKGRRMKSKPKDKDSK----KTKTCSKLKEKTKIGKLIITLGKKQKR 607
+ P+ E + EKK R+ + + K+ K KT SK K K+K+ + +GKK+KR
Sbjct: 208 DELPSVRPEEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTKGKSKLNTITPVVGKKRKR 267
Query: 608 KNESSDEISDAEQMP-QHTLKDQDS--QKRRSNRQIKRKKYAEDIEGK----QSEEEVKG 660
N SSD SD E MP Q +D++S QKRRSNRQ+KRKKY ED++ K + EEEV
Sbjct: 268 -NTSSDN-SDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDV 325
Query: 661 SMKIKKNSA-PLPGEQP-------LQLFVENPSEEDAAIVDKILSSRTVKKEISPGVMID 712
+ IK P P ++P +Q FVENPSEEDAAIVDK+LS R VKKE+ G +
Sbjct: 326 TGPIKPEPILPEPVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTE 385
Query: 713 TEEFFVKYKNYSYLHCEWATEEQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDY 772
EEFFVKYKNYSYLHCEWAT QL KDKRI QK+KRFK + AQ HFF + +EEPFNPDY
Sbjct: 386 AEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHE-DEEPFNPDY 444
Query: 773 VEVDRVLEVSFCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRP 832
VEVDR+L+ S DKD GEPVIYYLVKWCSLPYEDSTWELKEDVD KI EF+++Q+ P
Sbjct: 445 VEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRIQSRHP 504
Query: 833 DTRRLDRPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKT 892
+ +R++RP ++ WKK++ S +YKN NQLREYQLEG+NWLLFNWYNR+NCILADEMGLGKT
Sbjct: 505 ELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKT 564
Query: 893 IQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYE 952
IQSI FL E+ GI GPFL+IAPLSTI NWEREF TWT++N +VYHGSL SRQMIQQYE
Sbjct: 565 IQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQQYE 624
Query: 953 MYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEG 1012
MY +DS+GR+I GAY+F A+ITTFEMIL C EL IEWRCVIIDEAHRLKN+NCKLL+
Sbjct: 625 MYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDS 684
Query: 1013 LKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQA 1072
LK M+LEHKVLLTGTPLQNTVEELFSLLHFLEP +FPSES F+++FGDLKTEEQVQKLQA
Sbjct: 685 LKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQA 744
Query: 1073 ILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPN 1132
ILKPMMLRRLKEDVEK LAPK+ETIIEVELTNIQKKYYRAILEKNFSFLSKGAG TN+PN
Sbjct: 745 ILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPN 804
Query: 1133 LVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLP 1192
L+NTMMELRKCCNHPYLI GAEEKIL EFR+ + DFHLQAM++SAGKLVLIDKLLP
Sbjct: 805 LLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLP 864
Query: 1193 KMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1252
K+KAGGHKVLIFSQMVRCLDILEDYLI +RYLYERIDGRVRGNLRQAAIDRFSKPDSDRF
Sbjct: 865 KLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 924
Query: 1253 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSY 1312
VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ+KAVKVYRL+TRNSY
Sbjct: 925 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 984
Query: 1313 EREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGS 1372
EREMFD+ASLKLGLDKAVLQSMSGR+ N+ GIQQ SKKEIEDLLR+GAY AIMEE+DEGS
Sbjct: 985 EREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGS 1044
Query: 1373 KFCEEDIDQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEI 1432
KFCEEDIDQILLRRT TITIESEG+GSTFAKASFVAS NRTDISLDDPNFWQKWAKKA++
Sbjct: 1045 KFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKKADL 1104
Query: 1433 DIEAISGRNSLVIDTPRIRKQTRPFSATKDE-LAELSEAESEGDEKPKLRRPCDRSNGYG 1491
D++ ++ +N+LVIDTPR+RKQTR FS KD+ L E S+ ESE DE+P+ RR DR + YG
Sbjct: 1105 DMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESEDDERPRSRRH-DRHHAYG 1163
Query: 1492 RTECFRVEKNLLVYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKG 1551
RT+CFRVEK+LLVYGWGRWR+ILSHGRFKR++ E DVE ICRA+L YCL+HYRGDE IKG
Sbjct: 1164 RTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVETICRAILVYCLLHYRGDENIKG 1223
Query: 1552 FIWDLITPTEDGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQLL 1611
FIWDLI+P E+G+T+ELQNH GLS PVPRGRKGKKVK+Q S+FDI KA+W+RKYNP+ L
Sbjct: 1224 FIWDLISPAENGKTKELQNHSGLSIPVPRGRKGKKVKSQ-STFDIHKADWIRKYNPDTLF 1282
Query: 1612 QDEGYKKHIKHHCNKVLLRVRMLYYLKQEVIGNECQKVFDGVDASDIDVWVPEPDHSEVP 1671
QDE YKKH+KH CNKVLLRVRMLYYL+QEVIG++ +KV G AS+ID+W P D EVP
Sbjct: 1283 QDESYKKHLKHQCNKVLLRVRMLYYLRQEVIGDQAEKVLGGAIASEIDIWFPVVDQLEVP 1342
Query: 1672 AEWWDFDADKSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYM--- 1728
WWD +ADKSLLIGVFKHGYEKYNT+RADPALCFLE+ G+PD+KA+AAE R D
Sbjct: 1343 TTWWDSEADKSLLIGVFKHGYEKYNTMRADPALCFLEKAGRPDDKAIAAEHRVLDNFSDI 1402
Query: 1729 ------DGDVEDPEYKPAPAIFKDDIEDDVSSPGDLVIADGDGQLMEGDK---------V 1773
D D EDPEYKP KD +DD P L++ D + +++GD+ +
Sbjct: 1403 VEGVDFDKDCEDPEYKPLQGPPKD--QDDEGDP--LMMMDEEISVIDGDEAQVTQQPGHL 1458
Query: 1774 YWPTQSALTTRLRRLITAYQRTNKNRQIQQIQPTFSVPTSVMQPIYEEATLNPKMAAKIE 1833
+WP SALT RLRRL+TAYQR+ K Q++ + + EA K A+ E
Sbjct: 1459 FWPPGSALTARLRRLVTAYQRSYKREQMK----IEAAERGDRRRRRCEAAFKLKEIARRE 1514
Query: 1834 RQQRWTRREEADFYRVVSTFGVVFDPDRGQFDWTKFRAMARLHKKTDDSLEKYLYAFMSM 1893
+QQRWTRRE+ DFYRVVSTFGV +DPD QF W +FR ARL KKTD+SL KY + F++M
Sbjct: 1515 KQQRWTRREQTDFYRVVSTFGVEYDPDTMQFHWDRFRTFARLDKKTDESLTKYFHGFVAM 1574
Query: 1894 CRRVCRLP--SKEELVDPNIFIQPITEERASRTLYRIELLRKVREQALRHPQLFERLKLC 1951
CR+VCRLP + +E DPN+FI+PITEERASRTLYRIELLR++REQ L HP L +RL LC
Sbjct: 1575 CRQVCRLPPAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQVLCHPLLEDRLALC 1634
Query: 1952 HP-NPDLPVWWECGPHDRDLLIGAAKHGVSRTDYHILRDPELSFMAAQRNYSQSKMAH-- 2008
P P+LP WWE HD +LL GAA+HGVS+TD +I++DP+ SF+AA+ NY Q+ A
Sbjct: 1635 QPPGPELPKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLAARMNYMQNHQAGAP 1694
Query: 2009 ----SRTSTPLLQQYQVALSASPLTSLPRLLDAKGIILEEMKVKSENLKEEPQSSEEESM 2064
SR STPLL Q + +ASPL P DA +++ P+ + + +
Sbjct: 1695 APSLSRCSTPLLHQQYTSRTASPLPLRP---DAP-------------VEKSPEETATQ-V 1737
Query: 2065 SSVETRTLIKSEPVSPKNGVLPQATGDQKSGGKCETDRRMVAARTEPLTPNPASKKPRVH 2124
S+E+ TL V ++ PQ + + R+ + T PL S+
Sbjct: 1738 PSLESLTLKLEHEVVARSRPTPQ-----------DYEMRVSPSDTTPLV----SRSVPPV 1782
Query: 2125 KRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSS 2184
K E SDS+ D S S SSSSSS
Sbjct: 1783 KLEDEDDSDSELD-----LSKLSPSSSSSS------------------------------ 1807
Query: 2185 SSSSSSSSSEESDSDEEEAQKRESTTHMKAYDEESVASLSTTQD--ETQDSFQMNNGTPE 2242
SSSSSSSS++ES+ ++EE K + K YDEES+ SL+ +QD +D QM TPE
Sbjct: 1808 SSSSSSSSTDESEDEKEE--KLTDQSRSKLYDEESLLSLTMSQDGFPNEDGEQM---TPE 1862
Query: 2243 SAYILQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWPSARRSYDANTVASFYT-TKLL 2301
+ + AS WPKDRV+INR+D +CQ VL GKWPS+RRS + T LL
Sbjct: 1863 LLLLQE---RQRASEWPKDRVLINRIDLVCQAVLSGKWPSSRRSQEMVTGGILGPGNHLL 1919
Query: 2302 DSPGAAT-EYSDPSVPTPPGAGVKEEHDQSTQMSKEGGLKLTFQKQGLAQKRPFDGEDGA 2360
DSP EY D VPTP + ++ + T ++G+ +K
Sbjct: 1920 DSPSLTPGEYGDSPVPTPRSSSAASMAEEEASAVSTAAAQFTKLRRGMDEK--------- 1970
Query: 2361 LGQQQYLTRLRELQSASETSLVNFPKSIPVSGTSIQPTLGANGVILDNQPIVKKRRGRRK 2420
++ ++++ E + F K L ANGV+ D P+ K++G RK
Sbjct: 1971 ----EFTVQIKD----EEGLKLTFQKH----------KLMANGVMGDGHPLFHKKKGNRK 2012
Query: 2421 NVEGVDIFFFNRNKPPNHVSLGLTSSQISTGINPALSYTQPQGIPDTESPVPVINLKDGT 2480
+ +++ + PNH+ + D E+ +PVIN DGT
Sbjct: 2013 KLVELEV---ECMEEPNHLDV------------------------DLETRIPVINKVDGT 2045
Query: 2481 RLAGDDAPKRKDLEKWLKEHPGYVEDLGAFIPRMQLH-EGRPKQKRHRCRNPNKLDVNSL 2539
L G+DAP+R +LE WL+ HP + D PR + E R KQK RC+ NK ++N L
Sbjct: 2046 LLVGEDAPRRAELEMWLQGHPEFAVD-----PRFLAYMEDRRKQKWQRCKKNNKAELNCL 2100
Query: 2540 TGEERVQLINRRNARKVGGAFAPPLKDLCRFLKENSEYGVAPEWGDVVKQSGFLPESMYE 2599
G E VQ N RN +K G E+++
Sbjct: 2101 -GMEPVQTANSRNGKK-----------------------------------GHHTETVFN 2124
Query: 2600 RILTGPVVREEVSRRGRRPKSGIAKATAAAAAASATSVS 2638
R+L GP+ E +R RR + ++K A S S+S
Sbjct: 2125 RVLPGPIAPESSKKRARRMRPDLSKMMALMQGGSTGSLS 2163
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 1918 bits (4969), Expect = 0.0
Identities = 1029/1827 (56%), Positives = 1268/1827 (69%), Gaps = 110/1827 (6%)
Query: 511 KKQRKKVESESKQEKANRIISEAIAKAKERGERNIPRVMSPENFPTASVEGKE--EKKGR 568
KK+RKK E QE A + + K K + E P+ P + E KE +K G
Sbjct: 93 KKKRKKKEP-GDQEGAAKGSKDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGA 151
Query: 569 RMKSKPKD----KDSKKTKTCSKLKEKTKIGKLIITLG-------KKQKRKNESSDEISD 617
+ KP++ K++K+ ++C+ +TK K G KK KRK+E++ E +
Sbjct: 152 KKARKPREASGTKEAKEKRSCTDSAARTKSRKASKEQGPTPVEKKKKGKRKSETTVESLE 211
Query: 618 AEQ--------MPQHTLKDQDSQKRRSNRQIKRKKYAEDIEGKQSEEEVKGSMKIKKNSA 669
+Q P+ + + DSQKRRS RQ+KR+KY ED++ K +++ + +
Sbjct: 212 LDQGLTNPSLRSPEESTESTDSQKRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGAGRT 271
Query: 670 PLPGEQPLQLFVENPSEEDAAIVDKILSSRTVKKEISPGVM-IDTEEFFVKYKNYSYLHC 728
L E P E+DA I++KIL+S+TV+ E+ PG D E F+VKY+N+SYLHC
Sbjct: 272 SALSASTLAWQAEEPPEDDANIIEKILASKTVQ-EVHPGEPPFDLELFYVKYRNFSYLHC 330
Query: 729 EWATEEQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSFCEDKD 788
+WAT E+L KD RI QKIKRF+ +QAQ H F + +E+ FNPDYVEVDR+LEV+ +D +
Sbjct: 331 KWATMEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRILEVAHTKDAE 390
Query: 789 TGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRPDTRRLDRPPSNIWKKI 848
TGE V +YLVKWCSLPYE+STWEL+EDVD AK++EFE LQ P+ + ++RP S+ W+K+
Sbjct: 391 TGEEVTHYLVKWCSLPYEESTWELEEDVDPAKVKEFESLQVL-PEIKHVERPASDSWQKL 449
Query: 849 DQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGIR 908
++SR+YKN NQLREYQLEG+NWLLFNWYNR+NCILADEMGLGKTIQSITFL EI L GI
Sbjct: 450 EKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGIH 509
Query: 909 GPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYR 968
GPFLIIAPLSTI NWEREFRTWT++N +VYHGS ISRQMIQQYEM +RD+QG + G ++
Sbjct: 510 GPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFK 569
Query: 969 FQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTP 1028
F +ITTFEMIL C EL I W CVIIDEAHRLKN+NCKLLEGLKLM LEHKVLLTGTP
Sbjct: 570 FHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTP 629
Query: 1029 LQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEK 1088
LQN+VEELFSLL+FLEP +FPSE+ F++EFGDLKTEEQV+KLQ+ILKPMMLRRLK+DVEK
Sbjct: 630 LQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRLKDDVEK 689
Query: 1089 KLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPY 1148
LAPK+ETIIEVELTNIQKKYYRAILEKNFSFL+KGA Q N+PNL+NTMMELRKCCNHPY
Sbjct: 690 NLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPY 749
Query: 1149 LIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMV 1208
LI GAEEKIL +FR T++P A DF LQAMIQ+AGKLVLIDKLLPK+ AGGHKVLIFSQMV
Sbjct: 750 LINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMV 809
Query: 1209 RCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT 1268
RCLDILEDYLI +RY YERIDGRVRGNLRQAAIDRF KPDSDRFVFLLCTRAGGLGINLT
Sbjct: 810 RCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLT 869
Query: 1269 AADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDK 1328
AADTCIIFDSDWNPQNDLQAQARCHRIGQ+KAVKVYRL+TRNSYEREMFD+ASLKLGLDK
Sbjct: 870 AADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDK 929
Query: 1329 AVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDIDQILLRRTK 1388
AVLQ ++ R+ G+QQLSK E+EDLLR+GAYGA+M+EEDEGSKFCEEDIDQIL RRT
Sbjct: 930 AVLQDIN-RKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTH 988
Query: 1389 TITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIEAISGRNSLVIDTP 1448
TITI+SEG+GSTFAKASFVASGNRTDISLDDPNFWQKWAK AE+D EA + + SLVID P
Sbjct: 989 TITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELDTEAKNEKESLVIDRP 1048
Query: 1449 RIRKQTRPF-SATKDELAELSEAESEGDEKP-KLRRPCDRSNGYGRTECFRVEKNLLVYG 1506
R+RKQT+ + S +DEL E SE +S+ DE+P + RR D++ Y R ECFRVEKNLL++G
Sbjct: 1049 RVRKQTKHYNSFEEDELMEFSELDSDSDERPTRSRRLNDKARRYLRAECFRVEKNLLIFG 1108
Query: 1507 WGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKGFIWDLITPTEDGQTR 1566
WGRW++IL+HGRFK LNE D+E+ICRALL YC+ HY+GDEKIK FIW+LITPT+DGQ +
Sbjct: 1109 WGRWKDILTHGRFKWHLNEKDMEMICRALLVYCVKHYKGDEKIKSFIWELITPTKDGQAQ 1168
Query: 1567 ELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQLLQDEGYKKHIKHHCNK 1626
LQNH GLSAPVPRGRKGKK K Q +++ A+WL NPE +L D+GYKKH+K HCNK
Sbjct: 1169 TLQNHSGLSAPVPRGRKGKKTKNQLLIPELKDADWLATCNPEVVLHDDGYKKHLKQHCNK 1228
Query: 1627 VLLRVRMLYYLKQEVIGNECQKVFDGVDASDIDVWVPEPDHSEVPAEWWDFDADKSLLIG 1686
VLLRVRMLYYLK E++G +K F+G A ++DV +P+ D+ E+P +WWD +ADKSLLIG
Sbjct: 1229 VLLRVRMLYYLKAEILGEAAEKAFEGSPARELDVPLPDIDYMEIPVDWWDAEADKSLLIG 1288
Query: 1687 VFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYKPAPAIFKD 1746
VFKHGYE+YN +RADPALCFLE+VG PDEK+++AEQ DG + PE +D
Sbjct: 1289 VFKHGYERYNAMRADPALCFLEKVGMPDEKSLSAEQGVT---DGTSDIPERGNTDK--ED 1343
Query: 1747 DIEDDV----------SSPGDLVIA---DGDGQLMEG---DKVYWPTQSALTTRLRRLIT 1790
+ ED V S GD V + D +G DK WP SALT RLRRL+T
Sbjct: 1344 NAEDKVDGLQKQTESSSDGGDGVFSEKKDDSRAAQDGSDPDKSPWPVSSALTARLRRLVT 1403
Query: 1791 AYQRTNKNRQIQQIQPTFSVPTSVMQPIYEEATLNPKMAAKI--ERQQRWTRREEADFYR 1848
YQR N+ + +P P + + EE I E Q+RWTRRE+ADFYR
Sbjct: 1404 VYQRCNRK---ELCRPEILGPGNQGYWVQEEMFRRTSEMDLINKEAQKRWTRREQADFYR 1460
Query: 1849 VVSTFGVVFDPDRGQFDWTKFRAMARLHKKTDDSLEKYLYAFMSMCRRVCRLPSKEE--L 1906
VS+FGVV+D ++ FDWT+FR ++RL KK+D+SLE+Y Y+F++MCR VCRLP+ ++
Sbjct: 1461 TVSSFGVVYDQEKKTFDWTQFRIISRLDKKSDESLEQYFYSFVAMCRNVCRLPTWKDGGP 1520
Query: 1907 VDPNIFIQPITEERASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPVWWECGPH 1966
D I+++PITEERA+RTLYRIELLRKVREQ L+ PQL ERL+LC P+ LPVWWECG H
Sbjct: 1521 PDTTIYVEPITEERAARTLYRIELLRKVREQVLKCPQLHERLQLCRPSLYLPVWWECGKH 1580
Query: 1967 DRDLLIGAAKHGVSRTDYHILRDPELSFMAAQRNYSQSKMAHSRTSTPLLQQYQV----- 2021
DRDLLIG AKHG++RTD +I+ DP+LSF+ A RNY+Q K + ++ L YQ
Sbjct: 1581 DRDLLIGTAKHGLNRTDCYIMNDPQLSFLDAYRNYAQHKRSGTQAPGNLCCLYQTNSKLY 1640
Query: 2022 -ALSASPLT-----------------------SLP---------RLLDAKGI-------- 2040
+L+ S ++ SLP ++ D I
Sbjct: 1641 ESLTYSQMSRTSESLENEPENLVRVESRDDHLSLPDVTCENFISKVQDVISINHDESLLP 1700
Query: 2041 -ILEEMKVKSENLKEEPQSSEEESMSSVETRTLIKSEPVSPKNGVLPQATGDQKSGGKCE 2099
LE M + L +EP S +E ++ E+R + + +S + + G
Sbjct: 1701 ESLESMMYGKKVLSQEPSSFQESPSTNTESRKDVITISISKDGNCQSGGPEAEIASGPTF 1760
Query: 2100 TDRRMVAARTEPLTPNPASKKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHS 2159
+ N + K G S++ E +S S + +
Sbjct: 1761 MGSLEAGGVAQANIKNGKHLLMSISKEGELCCSEAGQRPENIGQLEAKCLASPSLNPGNE 1820
Query: 2160 RSGSSSSSSSSCSSASSSSSS-------STSSSSSSSSSSSEESDSDEEEAQKRESTTHM 2212
S S C S + SS S S S SD +EEE + E M
Sbjct: 1821 SGFVDMCSLSVCDSKRNLSSDQQLIDLLENKSLESKLILSQNHSDEEEEEEENEEENLAM 1880
Query: 2213 KAYDEESVASLSTTQDETQDSFQMNNG 2239
E L T+ T S + N G
Sbjct: 1881 AVGMGERPEVLHLTEPTTNISREKNQG 1907
Score = 233 bits (594), Expect = 2e-60
Identities = 217/767 (28%), Positives = 328/767 (42%), Gaps = 146/767 (19%)
Query: 2189 SSSSSEESDSDEEEAQKRESTTHMKAY-----DEESVASLSTTQDETQDSFQMNNGTPES 2243
S SE+ D + ++ R+ H + Y +EES +S S + D Q P
Sbjct: 2018 SELKSEDMDFENKDDYDRDGNCHSQDYPGKYSEEESKSSTSGITGDIGDELQEARA-PTI 2076
Query: 2244 AYILQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWPSARRSYDANTVASFYTTKLLDS 2303
A +LQ + + S WPKDRV+INRLD+IC VLKGKWPS+++ + T+ T L S
Sbjct: 2077 AQLLQEKTLYSFSEWPKDRVIINRLDNICHVVLKGKWPSSQQYEPSGTLP---TPVLTSS 2133
Query: 2304 PGAATEYSDPSVPTPP---GAGVKEEHDQSTQMSKEGGLKLTFQKQGLAQKRPFDGE--- 2357
G+ T S+P GA + + Q+ KE L F K +RP++ E
Sbjct: 2134 AGSRTSLSEPEAAEHSFSNGAAL------AAQIHKESFLAPVFTKDEQKHRRPYEFEVER 2187
Query: 2358 -DGALGQQQYLTR---------------LRELQSASE-----TSLVNFPKSIPVSG--TS 2394
A G +Q+ +L +SE TS S P G +S
Sbjct: 2188 DAKARGLEQFSATHGHTPIILNGWHGESAMDLSCSSEGSPGATSPFPVSASTPKIGAISS 2247
Query: 2395 IQPTLG-------------------ANGVILDNQPIVKKRRGRRKNVEG-VDIFFFNRNK 2434
+Q LG NG + + ++RRGRRK+VEG +D+ F
Sbjct: 2248 LQGALGMDLSGILQAGLIHPVTGQIVNGSLRRDDAATRRRRGRRKHVEGGMDLIFLKEQT 2307
Query: 2435 PPNHVSLGLTSSQISTGINPALSYTQPQGIPDTESPVPVINLKDGTRLAGDDAPKR---K 2491
+ G+ G LS T P+G P P + + A A K K
Sbjct: 2308 ----LQAGILEVHEDPG-QATLSTTHPEG------PGPATSAPEPATAASSQAEKSIPSK 2356
Query: 2492 DLEKWLKEHPGYVEDLGAFIPRMQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRR 2551
L WL++ Y ++ F +PKQ+R RC+ P KLDV+SL+GEERV I +
Sbjct: 2357 SLLDWLRQQADYSLEVPGFGANFS---DKPKQRRPRCKEPGKLDVSSLSGEERVPAIPKE 2413
Query: 2552 NARKVGGAFAPPLKDLCRFLKENSEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREE- 2610
P L+ GFLPE+ + L P++R+
Sbjct: 2414 ----------PGLR-------------------------GFLPENKFNHTLAEPILRDTG 2438
Query: 2611 VSRRGRRPKSGIAKATAAAAAASATSVSG-NPLLANGLLPGVDLTTLQALQQNLQNLQSL 2669
RRGRRP+S + KA + A S SG PL NGL+ G+DL L QN++N+ +
Sbjct: 2439 PRRRGRRPRSELLKAPSIV----ADSPSGMGPLFMNGLIAGMDLVGL----QNMRNMPGI 2490
Query: 2670 QVTAGLMGMPTG---LPSGGEAKNMAAMFPMLLSGMAGLPNLLGMGGLLTKP-TESGTED 2725
+T GL+G P G +P+G E K+ +M PM+L GMA +P + G+GGLL+ P + T
Sbjct: 2491 PLT-GLVGFPAGFATMPTGEEVKSTLSMLPMMLPGMAAVPQMFGVGGLLSPPMATTCTST 2549
Query: 2726 KKGSDSKESEGKTERTESQSSENGGENSVSS--------SPSTSSTAALNTAAAANPLAL 2777
S S ++ T TE + + + V + P S + ++P+A
Sbjct: 2550 APASLSSTTKSGTAVTEKTAEDKPSSHDVKTDTLAEDKPGPGPFSDQSEPAITTSSPVAF 2609
Query: 2778 NPLLLSNI----LYPGMLLTPGLNLHIPTLSQSNTFDVQNKNSDLGSSKSVEVKEEDSRI 2833
NP L+ + +YP M L+PG+ + +P + Q+ ++ S K + +S
Sbjct: 2610 NPFLIPGVSPGLIYPSMFLSPGMGMALPAMQQARHSEIVGLESQKRKKKKTKGDNPNSH- 2668
Query: 2834 KDQEDKGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSEDSDSSNE 2880
E E P + + E S A + + DS+N+
Sbjct: 2669 --PEPAPSCEREPSGDENCAEPSAPLPAEREHGAQAGEGALKDSNND 2713
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 523 bits (1348), Expect = e-148
Identities = 378/1157 (32%), Positives = 588/1157 (50%), Gaps = 159/1157 (13%)
Query: 433 DHDLDRQFTSHLVTRPSDMAQTQLQSQARSWHSSFSNHQHLHDRNHLCLQRQPPSSKKSD 492
D L +SH + + + + QS++ S H + + + Q S +S
Sbjct: 12 DSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESA 71
Query: 493 GSGTYTKLQNTQVRVMSEKKQRKKVE---------------SESKQEKANRIISEAIAKA 537
GS + L + + S+K++ V+ + S+QE + I E +
Sbjct: 72 GSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVYGVRRSNRSRQEPSRFNIKEEASSG 131
Query: 538 KE------RGERNIPRVMSPENFPTASVEGKEEKKGRRMKSKPKDKDSKKTKTCSKLK-E 590
E RG+R + + + P+ E+++G +S+P+ K K + +
Sbjct: 132 SESGSPKRRGQRQLKKQEKWKQEPSED----EQEQGTSAESEPEQKKVKARRPVPRRTVP 187
Query: 591 KTKIGKLIITLGKKQKRKNESSDEISDAEQMPQHTLKDQDSQKRRSNRQIKRKKYAEDIE 650
K ++ K T K+K K +SSDE D ++ P+ Q RR R K Y ED +
Sbjct: 188 KPRVKKQPKTQRGKRK-KQDSSDEDDDDDEAPKR-------QTRR--RAAKNVSYKEDDD 237
Query: 651 GKQSEEEVKGSMKIKKNSAPLPGEQPLQLFVENPSEEDAAIVDKILSSRTVKKEIS---- 706
+ +++ + GE + ++++ ++K+L SR KK +
Sbjct: 238 FETDSDDL----------IEMTGEGV------DEQQDNSETIEKVLDSRLGKKGATGAST 281
Query: 707 ----------PGVMIDTE------EFFVKYKNYSYLHCEWATEEQLLKDK-RIQQKIKRF 749
P DTE ++ +K+K +SY+H W +EE L + K + +K++ F
Sbjct: 282 TVYAIEANGDPSGDFDTEKDEGEIQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENF 341
Query: 750 KLRQAQRAHFFADMEEEP-------------FNPDYVEVDRVLEVSFCEDK--------- 787
K ++ + + + E N Y V+RV+ V +
Sbjct: 342 KKKEDEIKQWLGKVSPEDVEYFNCQQELASELNKQYQIVERVIAVKTSKSTLGQTDFPAH 401
Query: 788 -----DTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAK-----IEEFEQLQASRP----D 833
+ EP YL KW LPY + +WE ++ + K I+ F S+ +
Sbjct: 402 SRKPAPSNEPE--YLCKWMGLPYSECSWE--DEALIGKKFQNCIDSFHSRNNSKTIPTRE 457
Query: 834 TRRLDRPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTI 893
+ L + P + K + +LR+YQLEGLNWL +W + ILADEMGLGKTI
Sbjct: 458 CKALKQRPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTI 517
Query: 894 QSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQY 951
Q+I+FL Y + GPFLI+ PLST+ +W+REF W +INVVVY G L+SR I++Y
Sbjct: 518 QTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREY 577
Query: 952 EMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLE 1011
E ++ +F A+ITT+E++L L +I W + +DEAHRLKN + L +
Sbjct: 578 EWIHSQTK------RLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYK 631
Query: 1012 GLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQ 1071
L H++L+TGTPLQN+++EL+SLLHF+ P +F F ++ G + E Q L
Sbjct: 632 TLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGR-ENGYQSLH 690
Query: 1072 AILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVP 1131
+L+P +LRR+K+DVEK L K E I+ VE++ +QK+YY+ IL +N+ L+KG + +
Sbjct: 691 KVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGT-RGSTS 749
Query: 1132 NLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLL 1191
+N +MEL+KCCNH YLIK EE ++ L ++I+S+GKL+L+DKLL
Sbjct: 750 GFLNIVMELKKCCNHCYLIKPPEENERENGQEI---------LLSLIRSSGKLILLDKLL 800
Query: 1192 PKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDR 1251
+++ G++VLIFSQMVR LDIL +YL K Y ++R+DG ++G +R+ A+D F+ S+
Sbjct: 801 TRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSED 860
Query: 1252 FVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNS 1311
F FLL TRAGGLGINL +ADT +IFDSDWNPQNDLQAQAR HRIGQ K V +YRLVT+ +
Sbjct: 861 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGT 920
Query: 1312 YEREMFDRASLKLGLDKAVLQSM--SGR---ESNVG--GIQQLSKKEIEDLLRRGAYGAI 1364
E E+ +RA K+ LD V+Q M +GR E+N G +K+E+ +L+ GA
Sbjct: 921 VEEEIIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNSNPFNKEELTAILKFGAEDLF 980
Query: 1365 MEEEDEGSKFCEEDIDQIL----LRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDP 1420
E E E S+ E DID+IL R + T ++ S F A+F + ++
Sbjct: 981 KELEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELEERPH 1040
Query: 1421 NFWQK---WAKKAEIDIEAISGRNSLVIDTPRIRKQTRPF-------------SATKDEL 1464
W + ++ +++ E + PRIR T+ A +
Sbjct: 1041 KDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQRSSA 1100
Query: 1465 AELSEAESEGDEKPKLR 1481
+E +S+ D+KPK R
Sbjct: 1101 SESETEDSDDDKKPKRR 1117
Score = 49.7 bits (117), Expect = 4e-05
Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 2136 SDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEE 2195
S E SS S +SS S+S S S SGS S S S S S SSS SS S S E
Sbjct: 8 SQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESE 67
Query: 2196 SDSDEEEAQK-RESTTHMKAYDEESVASLSTTQDETQDSF 2234
S+S ++Q A +E +A + +E D +
Sbjct: 68 SESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVY 107
Score = 37.7 bits (86), Expect = 0.17
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 19/107 (17%)
Query: 2112 LTPNPASKKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSC 2171
L N +S GS+S S S+S+ S GS S S+
Sbjct: 15 LHSNASSHSASEEASGSDSGSQSESE-------------------QGSDPGSGHGSESNS 55
Query: 2172 SSASSSSSSSTSSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYDEE 2218
SS SS S S + S S+ S S ++ E+ A K+E +K EE
Sbjct: 56 SSESSESQSESESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEE 102
Score = 36.2 bits (82), Expect = 0.48
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 1675 WDFDADKSLLIGVFKHGYEKYNTIRADPALCFLERV 1710
W + D LL+G+++HGY + I+ DP L +++
Sbjct: 1261 WGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKI 1296
Score = 35.8 bits (81), Expect = 0.63
Identities = 56/239 (23%), Positives = 83/239 (34%), Gaps = 41/239 (17%)
Query: 1967 DRDLLIGAAKHGVSRTDYHILRDPELSFMAAQRNYSQSKMAHSRTSTPLLQQYQVALSAS 2026
D LL+G +HG + I DPEL K + Q+ A
Sbjct: 1266 DSRLLLGIYEHGYGNWEL-IKTDPELKLTDKILPVETDKKPQGK---------QLQTRAD 1315
Query: 2027 PLTSLPRL-LDAKGIIL--EEMKVKSENLKEEPQSSEEESMSSVETRTLIKSEPVSPKNG 2083
L L R L+ KG + EE K+K K +P+ +E + ++ I E SP++
Sbjct: 1316 YLLKLLRKGLEKKGAVTGGEEAKLK----KRKPRVKKENKVPRLKEEHGI--ELSSPRHS 1369
Query: 2084 VLPQATGDQKSGGKCETDRRMVAARTEPLTPNPASKKPRVHKRGSESS-SDSDSDSERSS 2142
P G+ K G P+ K+ + +K SS D + D ER
Sbjct: 1370 DNPSEEGEVKDDG----------LEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKK 1419
Query: 2143 CSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDEE 2201
+ S + SSS S S T+ S E+ D D+E
Sbjct: 1420 SKDKKEKPKSGDA-----------KSSSKSKRSQGPVHITAGSEPVPIGEDEDDDLDQE 1467
Score = 33.5 bits (75), Expect = 3.1
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 30/133 (22%)
Query: 487 SSKKSDGSGTYTKLQNTQVRVMSEKKQRKKVESESKQEKANRIISEAIAKAKERGERNIP 546
S + SD ++++ + KK++KK E++ +EK + ++ + G+
Sbjct: 1365 SPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKEK------QMSSRKDKEGD---- 1414
Query: 547 RVMSPENFPTASVEGKEEKKGRRMKSKPKDKDSKKTKTCSKLKEKTKIGKLIITLGKKQK 606
KE KK + K KPK D+K S K K G + IT G +
Sbjct: 1415 ---------------KERKKSKDKKEKPKSGDAK-----SSSKSKRSQGPVHITAGSEPV 1454
Query: 607 RKNESSDEISDAE 619
E D+ D E
Sbjct: 1455 PIGEDEDDDLDQE 1467
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 520 bits (1340), Expect = e-147
Identities = 332/861 (38%), Positives = 476/861 (55%), Gaps = 126/861 (14%)
Query: 715 EFFVKYKNYSYLHCEWATEEQLLKDKRI----------------------QQKIKRFKLR 752
+FFVK++ SY HC W +E QL ++ ++K ++ K +
Sbjct: 542 QFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFGGDEEKSRKRKNK 601
Query: 753 QAQRAHFFADMEEEPFN----PDYVEVDRVLEVSFCEDKDTGEPVIYYLVKWCSLPYEDS 808
+ FA+MEE + P+++ + R+L S DK + ++YL+KW LPY+ +
Sbjct: 602 DPK----FAEMEERFYRYGIKPEWMMIHRILNHSV--DK---KGHVHYLIKWRDLPYDQA 652
Query: 809 TWELKEDVDLAKIEEFEQL----------QASRPDT-------RRLDRPPSNIWKKIDQS 851
+WE EDV++ + F+Q + RP R+L+RPP +D +
Sbjct: 653 SWE-SEDVEIQDYDLFKQSYWNHRELMRGEEGRPGKKLKKVKLRKLERPPET--PTVDPT 709
Query: 852 RDYKN--------GNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL 903
Y+ G L YQ+EGLNWL F+W + ILADEMGLGKT+Q+ FLY +
Sbjct: 710 VKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLY 769
Query: 904 LTG-IRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGR 961
G +GPFL+ APLSTI NWEREF W D+ VV Y G SR +I++ E F D+ R
Sbjct: 770 KEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIR 829
Query: 962 IIRGAYR--------FQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGL 1013
+ A R F ++T++E+I L +I+W C+I+DEAHRLKN K L
Sbjct: 830 GGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL 889
Query: 1014 KLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAI 1073
+L+HK+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+Q++KL +
Sbjct: 890 NGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDM 949
Query: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNL 1133
L P MLRRLK DV K + K E I+ VEL+ +QKKYY+ IL +NF L+ G V +L
Sbjct: 950 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV-SL 1008
Query: 1134 VNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPK 1193
+N +M+L+KCCNHPYL A + Y+ +A +I+++GKL+L+ K+L
Sbjct: 1009 LNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSA-------LIRASGKLLLLQKMLKN 1061
Query: 1194 MKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFV 1253
+K GGH+VLIFSQM + LD+LED+L H+ Y YERIDG + GN+RQ AIDRF+ P + +F
Sbjct: 1062 LKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFC 1121
Query: 1254 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYE 1313
FLL TRAGGLGINL ADT II+DSDWNP ND+QA +R HRIGQNK V +YR VTR S E
Sbjct: 1122 FLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1181
Query: 1314 REMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSK 1373
+ A K+ L V++ G ++ +SK+E++D+L+ G +E +G
Sbjct: 1182 ERITQVAKKKMMLTHLVVRPGLGSKTG-----SMSKQELDDILKFGTEELFKDEATDGGG 1236
Query: 1374 FCEEDID-----------QILLRRTKTITIESEGRG-----STFAKASFVA----SGNRT 1413
+E D + LL R + T ++E +G S+F A +V G
Sbjct: 1237 DNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEE 1296
Query: 1414 DISLD--------DPNFWQKWAKKAEIDIEAISGRNSLVIDTPRIRKQTRPFSATK---- 1461
++ + DP++W+K + + RN + RIRKQ ++
Sbjct: 1297 EVEREIIKQEESVDPDYWEKLLRHHYEQQQEDLARN--LGKGKRIRKQVNYNDGSQEDRD 1354
Query: 1462 ------DELAELSEAESEGDE 1476
D ++ S A EGDE
Sbjct: 1355 WQDDQSDNQSDYSVASEEGDE 1375
Score = 41.2 bits (95), Expect = 0.015
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 560 EGKEEKKGRRMKSKPKDKDSKKTKTCSKLKEKTKIGKLIITLGKKQKRKNESSDEI---S 616
EGK R+ K P+ D+KK K K K+G G K+KR + D++ S
Sbjct: 264 EGKGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLG----GFGSKRKRSSSEDDDLDVES 319
Query: 617 DAEQMPQHTLKDQDSQKRRSNRQIKRKKYAEDIEGKQSEEEV 658
D + ++ D RS+R RKK + K+ EEEV
Sbjct: 320 DFDDASINSYSVSDGSTSRSSR--SRKKLRTTKKKKKGEEEV 359
Score = 32.7 bits (73), Expect = 5.3
Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 39/165 (23%)
Query: 500 LQNTQVRVMSEKKQRKK-----VESESKQEKANRIISEAIAKAKERGERNIPRVMSPENF 554
L T+ + +KK+ KK + +Q+K ++ + + G + E
Sbjct: 43 LSETETPKLKKKKKPKKPRDPKIPKSKRQKKERMLLCRQLGDSSGEGPEFVEE--EEEVA 100
Query: 555 PTASVEGKEEKKGRRMKSKPKDKDSKKTKTCSKLKEKTKIGKLIITLGKKQKRKNESSDE 614
+ EG + G++ K K K KK+K+ K+K + E D+
Sbjct: 101 LRSDSEGSDYTPGKKKKKKLGPKKEKKSKS-------------------KRKEEEEEEDD 141
Query: 615 ISDAEQMPQHTLKDQDSQKRRSNRQIKRKKYAEDIEGKQSEEEVK 659
D DS++ +S+ Q+ EDI+ SEE+ +
Sbjct: 142 -------------DDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYR 173
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 505 bits (1301), Expect = e-142
Identities = 295/713 (41%), Positives = 410/713 (57%), Gaps = 86/713 (12%)
Query: 711 IDTEEFFVKYKNYSYLHCEWATEEQLLKDKRIQQKIKRFKL------------------- 751
I EFFVK+ SY HC W E QL + + + K
Sbjct: 506 IPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRKNDMDEPPPFDYGSGDEDGKS 565
Query: 752 -RQAQRAHFFADMEEEPFN----PDYVEVDRVLEVSFCEDKDTGEPVIYYLVKWCSLPYE 806
++ + +A MEE + P+++ + R+L SF + D ++YL+KW LPY+
Sbjct: 566 EKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNHSFDKKGD-----VHYLIKWKDLPYD 620
Query: 807 DSTWELKEDVDLAKIEEFEQLQASRPDTRRLD--RPPSNIWKKIDQSRDYKN-------- 856
TWE+ +D+D+ + +Q + + R P + KK + RD K
Sbjct: 621 QCTWEI-DDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKGKKLRDDKQEKPPDTPI 679
Query: 857 -----------------GNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL 899
G L YQLEGLNWL F+W + ILADEMGLGKT+Q+I FL
Sbjct: 680 VDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFL 739
Query: 900 YEILLTG-IRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRD 957
Y + G +GP+L+ APLSTI NWEREF W D VV Y G SR +I++ E F D
Sbjct: 740 YSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFED 799
Query: 958 SQGRIIRGAYR--------FQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKL 1009
+ R + +R F ++T++E+I L +IEW C+++DEAHRLKN K
Sbjct: 800 NAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKF 859
Query: 1010 LEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQK 1069
L +++K+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+Q++K
Sbjct: 860 FRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKK 919
Query: 1070 LQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFL-SKGAGQT 1128
L +L P MLRRLK DV K + K E I+ VEL+ +QKKYY+ IL +NF L SKG G
Sbjct: 920 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG-- 977
Query: 1129 NVPNLVNTMMELRKCCNHPYL--IKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVL 1186
N +L+N MM+L+KCCNHPYL + E +L + ++++S+GKL+L
Sbjct: 978 NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPN---------GSYDGSSLVKSSGKLML 1028
Query: 1187 IDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSK 1246
+ K+L K++ GH+VLIFSQM + LD+LED+L ++ Y YERIDG + G LRQ AIDRF+
Sbjct: 1029 LQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNA 1088
Query: 1247 PDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRL 1306
P + +F FLL TRAGGLGINL ADT II+DSDWNP ND+QA +R HRIGQNK V +YR
Sbjct: 1089 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1148
Query: 1307 VTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRG 1359
VTR S E + A K+ L V++ G +S ++K+E++D+L+ G
Sbjct: 1149 VTRASVEERITQVAKRKMMLTHLVVRPGLGSKSG-----SMTKQELDDILKFG 1196
Score = 33.1 bits (74), Expect = 4.1
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 581 KTKTCSKLKEKTKIGKLIITLGKKQKRKNESSDEISDAEQMPQHTLKDQDSQ---KRRSN 637
K K KLKE GK +K+K S+DE+S+ E+ + + + S ++
Sbjct: 49 KKKKPKKLKENKCKGK--------RKKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKK 100
Query: 638 RQIKRKKYAEDIEGKQSEEE---VKGSMKIKKNSAPLPGEQPLQLFVENPSEED 688
+++K KK + K+ E+E G +K K+S L E L SEED
Sbjct: 101 KKLKDKKEKKAKRKKKDEDEDDNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEED 154
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 505 bits (1300), Expect = e-142
Identities = 333/864 (38%), Positives = 474/864 (54%), Gaps = 118/864 (13%)
Query: 715 EFFVKYKNYSYLHCEWATEEQL-----LKDKRIQQKIK----------------RFKLRQ 753
EFFVK+ SY HC WA E QL + + Q+K + R+
Sbjct: 549 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 608
Query: 754 AQRAHFFADMEEEPFN----PDYVEVDRVLEVSFCEDKDTGEPVIYYLVKWCSLPYEDST 809
+ H+ A+MEE+ + P+++ V R++ S DK +YLVKW LPY+ ST
Sbjct: 609 VKDPHY-AEMEEKYYRFGIKPEWMTVHRIINHSV--DKKGN---YHYLVKWRDLPYDQST 662
Query: 810 WELKEDVDLAKIEEFEQ--------LQASRPDTRRL----------DRPPSNIWKKIDQS 851
WE ++++++ + EE +Q + P R D PPS+ D +
Sbjct: 663 WE-EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTN--DPT 719
Query: 852 RDYKN--------GNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL 903
Y+ G L YQLEGLNWL F+W + ILADEMGLGKTIQ+I FLY +
Sbjct: 720 VKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLY 779
Query: 904 LTG-IRGPFLIIAPLSTIANWEREFRTWTD-INVVVYHGSLISRQMIQQYEMYFRDSQGR 961
G +GPFL+ APLSTI NWEREF+ W VV Y G SR +I++ E F D+ +
Sbjct: 780 KEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIK 839
Query: 962 IIRGAYR--------FQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGL 1013
+ A++ F ++T++E+I L +I W C+++DEAHRLKN K L
Sbjct: 840 GGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVL 899
Query: 1014 KLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAI 1073
++HK+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+Q++KL +
Sbjct: 900 NGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDL 959
Query: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNL 1133
L P MLRRLK DV K + K E I+ VEL+ +QKKYY+ IL +NF L+ G V +L
Sbjct: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV-SL 1018
Query: 1134 VNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPK 1193
+N MM+L+KCCNHPYL A ++ + + A+I+S+GKL+L+ K+L K
Sbjct: 1019 LNIMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
Query: 1194 MKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFV 1253
+K GH+VLIFSQM + LD+LED+L ++ Y YERIDG + G LRQ AIDRF+ P + +F
Sbjct: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
Query: 1254 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYE 1313
FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ V +YR VTR S E
Sbjct: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
Query: 1314 REMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSK 1373
+ A K+ L V++ G ++ +SK+E++D+L+ G + ++E+EG
Sbjct: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAG-----SMSKQELDDILKFGT-EELFKDENEGEN 1245
Query: 1374 FCEEDIDQI---------LLRRTKTITIESEGRG-----STFAKASFVASGNRTDISLD- 1418
EED I LL R + T +++ + S+F A +V ++
Sbjct: 1246 -KEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIER 1304
Query: 1419 ---------DPNFWQKWAKKAEIDIEAISGRNSLVIDTPRIRKQTRPFSATKDELAELS- 1468
DP++W+K + + RN + R+RKQ A +++ S
Sbjct: 1305 EIIKQEENVDPDYWEKLLRHHYEQQQEDLARN--LGKGKRVRKQVNYNDAAQEDQDNQSE 1362
Query: 1469 ------EAESEGDEKPKLRRPCDR 1486
E + + DE+P+ RR R
Sbjct: 1363 YSVGSEEEDEDFDERPEGRRQSKR 1386
Score = 32.3 bits (72), Expect = 6.9
Identities = 16/64 (25%), Positives = 35/64 (54%)
Query: 2142 SCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDEE 2201
S S+ SS +SS + + + +S+++S C+S ++ + S + EE+++ EE
Sbjct: 1522 SADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEE 1581
Query: 2202 EAQK 2205
+ +K
Sbjct: 1582 KPEK 1585
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 505 bits (1300), Expect = e-142
Identities = 333/864 (38%), Positives = 474/864 (54%), Gaps = 118/864 (13%)
Query: 715 EFFVKYKNYSYLHCEWATEEQL-----LKDKRIQQKIK----------------RFKLRQ 753
EFFVK+ SY HC WA E QL + + Q+K + R+
Sbjct: 549 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 608
Query: 754 AQRAHFFADMEEEPFN----PDYVEVDRVLEVSFCEDKDTGEPVIYYLVKWCSLPYEDST 809
+ H+ A+MEE+ + P+++ V R++ S DK +YLVKW LPY+ ST
Sbjct: 609 VKDPHY-AEMEEKYYRFGIKPEWMTVHRIINHSV--DKKGN---YHYLVKWRDLPYDQST 662
Query: 810 WELKEDVDLAKIEEFEQ--------LQASRPDTRRL----------DRPPSNIWKKIDQS 851
WE ++++++ + EE +Q + P R D PPS+ D +
Sbjct: 663 WE-EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTN--DPT 719
Query: 852 RDYKN--------GNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL 903
Y+ G L YQLEGLNWL F+W + ILADEMGLGKTIQ+I FLY +
Sbjct: 720 VKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLY 779
Query: 904 LTG-IRGPFLIIAPLSTIANWEREFRTWTD-INVVVYHGSLISRQMIQQYEMYFRDSQGR 961
G +GPFL+ APLSTI NWEREF+ W VV Y G SR +I++ E F D+ +
Sbjct: 780 KEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIK 839
Query: 962 IIRGAYR--------FQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGL 1013
+ A++ F ++T++E+I L +I W C+++DEAHRLKN K L
Sbjct: 840 GGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVL 899
Query: 1014 KLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAI 1073
++HK+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+Q++KL +
Sbjct: 900 NGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDL 959
Query: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNL 1133
L P MLRRLK DV K + K E I+ VEL+ +QKKYY+ IL +NF L+ G V +L
Sbjct: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV-SL 1018
Query: 1134 VNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPK 1193
+N MM+L+KCCNHPYL A ++ + + A+I+S+GKL+L+ K+L K
Sbjct: 1019 LNIMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
Query: 1194 MKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFV 1253
+K GH+VLIFSQM + LD+LED+L ++ Y YERIDG + G LRQ AIDRF+ P + +F
Sbjct: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
Query: 1254 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYE 1313
FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ V +YR VTR S E
Sbjct: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
Query: 1314 REMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSK 1373
+ A K+ L V++ G ++ +SK+E++D+L+ G + ++E+EG
Sbjct: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAG-----SMSKQELDDILKFGT-EELFKDENEGEN 1245
Query: 1374 FCEEDIDQI---------LLRRTKTITIESEGRG-----STFAKASFVASGNRTDISLD- 1418
EED I LL R + T +++ + S+F A +V ++
Sbjct: 1246 -KEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIER 1304
Query: 1419 ---------DPNFWQKWAKKAEIDIEAISGRNSLVIDTPRIRKQTRPFSATKDELAELS- 1468
DP++W+K + + RN + R+RKQ A +++ S
Sbjct: 1305 EIIKQEENVDPDYWEKLLRHHYEQQQEDLARN--LGKGKRVRKQVNYNDAAQEDQDNQSE 1362
Query: 1469 ------EAESEGDEKPKLRRPCDR 1486
E + + DE+P+ RR R
Sbjct: 1363 YSVGSEEEDEDFDERPEGRRQSKR 1386
Score = 32.3 bits (72), Expect = 6.9
Identities = 16/64 (25%), Positives = 35/64 (54%)
Query: 2142 SCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDEE 2201
S S+ SS +SS + + + +S+++S C+S ++ + S + EE+++ EE
Sbjct: 1522 SADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEE 1581
Query: 2202 EAQK 2205
+ +K
Sbjct: 1582 KPEK 1585
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 505 bits (1300), Expect = e-142
Identities = 333/864 (38%), Positives = 474/864 (54%), Gaps = 118/864 (13%)
Query: 715 EFFVKYKNYSYLHCEWATEEQL-----LKDKRIQQKIK----------------RFKLRQ 753
EFFVK+ SY HC WA E QL + + Q+K + R+
Sbjct: 608 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 667
Query: 754 AQRAHFFADMEEEPFN----PDYVEVDRVLEVSFCEDKDTGEPVIYYLVKWCSLPYEDST 809
+ H+ A+MEE+ + P+++ V R++ S DK +YLVKW LPY+ ST
Sbjct: 668 VKDPHY-AEMEEKYYRFGIKPEWMTVHRIINHSV--DKKGN---YHYLVKWRDLPYDQST 721
Query: 810 WELKEDVDLAKIEEFEQ--------LQASRPDTRRL----------DRPPSNIWKKIDQS 851
WE ++++++ + EE +Q + P R D PPS+ D +
Sbjct: 722 WE-EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTN--DPT 778
Query: 852 RDYKN--------GNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL 903
Y+ G L YQLEGLNWL F+W + ILADEMGLGKTIQ+I FLY +
Sbjct: 779 VKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLY 838
Query: 904 LTG-IRGPFLIIAPLSTIANWEREFRTWTD-INVVVYHGSLISRQMIQQYEMYFRDSQGR 961
G +GPFL+ APLSTI NWEREF+ W VV Y G SR +I++ E F D+ +
Sbjct: 839 KEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIK 898
Query: 962 IIRGAYR--------FQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGL 1013
+ A++ F ++T++E+I L +I W C+++DEAHRLKN K L
Sbjct: 899 GGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVL 958
Query: 1014 KLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAI 1073
++HK+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+Q++KL +
Sbjct: 959 NGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDL 1018
Query: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNL 1133
L P MLRRLK DV K + K E I+ VEL+ +QKKYY+ IL +NF L+ G V +L
Sbjct: 1019 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV-SL 1077
Query: 1134 VNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPK 1193
+N MM+L+KCCNHPYL A ++ + + A+I+S+GKL+L+ K+L K
Sbjct: 1078 LNIMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1130
Query: 1194 MKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFV 1253
+K GH+VLIFSQM + LD+LED+L ++ Y YERIDG + G LRQ AIDRF+ P + +F
Sbjct: 1131 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1190
Query: 1254 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYE 1313
FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ V +YR VTR S E
Sbjct: 1191 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1250
Query: 1314 REMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSK 1373
+ A K+ L V++ G ++ +SK+E++D+L+ G + ++E+EG
Sbjct: 1251 ERITQVAKRKMMLTHLVVRPGLGSKAG-----SMSKQELDDILKFGT-EELFKDENEGEN 1304
Query: 1374 FCEEDIDQI---------LLRRTKTITIESEGRG-----STFAKASFVASGNRTDISLD- 1418
EED I LL R + T +++ + S+F A +V ++
Sbjct: 1305 -KEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIER 1363
Query: 1419 ---------DPNFWQKWAKKAEIDIEAISGRNSLVIDTPRIRKQTRPFSATKDELAELS- 1468
DP++W+K + + RN + R+RKQ A +++ S
Sbjct: 1364 EIIKQEENVDPDYWEKLLRHHYEQQQEDLARN--LGKGKRVRKQVNYNDAAQEDQDNQSE 1421
Query: 1469 ------EAESEGDEKPKLRRPCDR 1486
E + + DE+P+ RR R
Sbjct: 1422 YSVGSEEEDEDFDERPEGRRQSKR 1445
Score = 32.3 bits (72), Expect = 6.9
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2129 ESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSS 2188
E D +DS+RSS +S + +S ++ +S+++S C+S ++ + S
Sbjct: 1575 ELMPDPSADSKRSSRASSPTKTSPTTP-------EASATNSPCTSKPATPAPSEKGEGIR 1627
Query: 2189 SSSSSEESDSDEEEAQK 2205
+ EE+++ EE+ +K
Sbjct: 1628 TPLEKEEAENQEEKPEK 1644
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 496 bits (1278), Expect = e-139
Identities = 374/1111 (33%), Positives = 561/1111 (50%), Gaps = 143/1111 (12%)
Query: 483 RQPPSSKKSDGSGTYTKLQNTQVRVMSEKKQRKKVESESKQEKANRIISEAIAKAKERGE 542
+ PS S K Q Q + + E +S + + S + + K + E
Sbjct: 88 KSSPSILAVQRSAILKKQQQQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDE 147
Query: 543 RNIPRVMSPENFPTASVEGKEEKKGRRMKS--------KPKDK-DSKKTKTCSKLKEKTK 593
MS P+ S E ++ R S +PK+K S+K + SK K K
Sbjct: 148 ---DWQMSGSGSPSQSGSDSESEEEREKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKK 204
Query: 594 IGKLIITLGKKQKRKNESSDEISDAEQMPQHTLKDQDSQKRRSNRQIK-RKKYAEDIEGK 652
I LG+K KR+ +SS+E D E D D+ KR S RQ Y ED E K
Sbjct: 205 I------LGQK-KRQIDSSEEDDDEE--------DYDNDKRSSRRQATVNVSYKEDEEMK 249
Query: 653 QSEEEVKGSMKIKKNSAPLPGEQPLQLFVENPSEEDAAIVDKILSSRTVKK--------- 703
+++ + GE V P EE+ +++ + R +K
Sbjct: 250 TDSDDL----------LEVCGED-----VPQPEEEEFETIERFMDCRIGRKGATGATTTI 294
Query: 704 -------EISPGVMIDTE----EFFVKYKNYSYLHCEWATEEQLLKDK-RIQQKIKRFKL 751
+ + G + E ++ +K+K +S++H W TEE L + R +K+ +K
Sbjct: 295 YAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKK 354
Query: 752 RQAQRAHFFADMEEEP-------------FNPDYVEVDRVLEVSFCEDKDTGEPVIYYLV 798
+ + + + E + Y V+R++ S + G P Y
Sbjct: 355 KDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSN-QKSAAGYPDYY--C 411
Query: 799 KWCSLPYEDSTWE---LKEDVDLAKIEEFEQLQASRP----DTRRLDRPPSNI-WKKIDQ 850
KW LPY + +WE L A I+E+ S+ D + L + P + KK
Sbjct: 412 KWQGLPYSECSWEDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPS 471
Query: 851 SRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRG 909
G +LR+YQL GLNWL +W +CILADEMGLGKTIQ+I+FL Y + G
Sbjct: 472 YIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYG 531
Query: 910 PFLIIAPLSTIANWEREFRTW-TDINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYR 968
PFL++ PLST+ +W+RE +TW + +N VVY G + SR MI+ +E ++ +
Sbjct: 532 PFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTK------RLK 585
Query: 969 FQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTP 1028
F ++TT+E++L L + W + +DEAHRLKN + L + L H++L+TGTP
Sbjct: 586 FNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTP 645
Query: 1029 LQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEK 1088
LQN+++EL+SLLHF+ P +F S F +E G + E L L+P +LRR+K+DVEK
Sbjct: 646 LQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGR-EYGYASLHKELEPFLLRRVKKDVEK 704
Query: 1089 KLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPY 1148
L K E I+ +E++ +QK+YY+ IL +N+ LSKG+ + + +N MMEL+KCCNH Y
Sbjct: 705 SLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGS-KGSTSGFLNIMMELKKCCNHCY 763
Query: 1149 LIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMV 1208
LIK + + YN + LQ +I+S+GKL+L+DKLL +++ G++VLIFSQMV
Sbjct: 764 LIKPPDNN------EFYNKQEA---LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMV 814
Query: 1209 RCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT 1268
R LDIL +YL ++++ ++R+DG ++G LR+ A+D F+ S+ F FLL TRAGGLGINL
Sbjct: 815 RMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLA 874
Query: 1269 AADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDK 1328
+ADT +IFDSDWNPQNDLQAQAR HRIGQ K V +YRLVT+ S E ++ +RA K+ LD
Sbjct: 875 SADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDH 934
Query: 1329 AVLQSMSGRESNV-------GGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDIDQ 1381
V+Q M V +K+E+ +L+ GA E E E + E DID+
Sbjct: 935 LVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDE 994
Query: 1382 ILLRRTKT-------ITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWA------K 1428
I L+R +T +T+ E S F A+F ++ + DI L+ + W +
Sbjct: 995 I-LKRAETHENEPGPLTVGDE-LLSQFKVANF-SNMDEDDIELEPERNSKNWEEIIPEDQ 1051
Query: 1429 KAEIDIEAISGRNSLVIDTPRIRKQTRPFSATKDE---------LAELSEAESEGDEKPK 1479
+ ++ E + PR+R + S E S++ SEG K
Sbjct: 1052 RRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISEGKRPKK 1111
Query: 1480 LRRP--CDRSN--GYGRTECFRVEKNLLVYG 1506
RP R N G+ E R K+ +G
Sbjct: 1112 RGRPRTIPRENIKGFSDAEIRRFIKSYKKFG 1142
Score = 58.2 bits (139), Expect = 1e-07
Identities = 35/73 (47%), Positives = 40/73 (54%)
Query: 2134 SDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSS 2193
SD +S R+S S S S S S S SGSSS SSS SS+ S SS S S S S S S S
Sbjct: 5 SDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSES 64
Query: 2194 EESDSDEEEAQKR 2206
E S E + Q +
Sbjct: 65 ESDTSRENKVQAK 77
Score = 51.6 bits (122), Expect = 1e-05
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 2125 KRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSS 2184
+ S SS SD DS +S S SSS SSS S S+SGSS S S S S + S S S TS
Sbjct: 11 RNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDTSR 70
Query: 2185 -----------------SSSSSSSSSEESDSDEEEAQKRESTTHMKAYDEESVASLSTTQ 2227
SS S + + S +++ Q+++ H + + S S+++
Sbjct: 71 ENKVQAKPPKVDGAEFWKSSPSILAVQRSAILKKQQQQQQQQQHQASSNSGSEEDSSSSE 130
Query: 2228 DETQDSFQM 2236
D S ++
Sbjct: 131 DSDDSSSEV 139
Score = 47.4 bits (111), Expect = 2e-04
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 2130 SSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSS 2189
S +S +S S S S S+S S S S SGSSS SSS S +S S S S S S S S
Sbjct: 5 SDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSES 64
Query: 2190 SSSSEESDSDEEEAQKRESTTHMKAYDEESVASLST-------TQDETQDSFQMNNGTPE 2242
S + + + + K + K+ S Q + Q N+G+ E
Sbjct: 65 ESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAILKKQQQQQQQQQHQASSNSGSEE 124
Query: 2243 SA 2244
+
Sbjct: 125 DS 126
Score = 40.8 bits (94), Expect = 0.020
Identities = 24/67 (35%), Positives = 32/67 (47%)
Query: 2144 SSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDEEEA 2203
+ S S +S S S S+S S + SSS SS+ SSS S SS +S S+
Sbjct: 2 NGHSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQ 61
Query: 2204 QKRESTT 2210
+ ES T
Sbjct: 62 SESESDT 68
Score = 37.7 bits (86), Expect = 0.17
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 1675 WDFDADKSLLIGVFKHGYEKYNTIRADPALCFLERV--GKPDEKAVAAE-QRANDYM 1728
W + D +LLIG++++GY + I+ DP L ++ PD+K A + Q DY+
Sbjct: 1253 WGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYL 1309
Score = 35.8 bits (81), Expect = 0.63
Identities = 42/178 (23%), Positives = 66/178 (37%), Gaps = 17/178 (9%)
Query: 2057 QSSEEESMSSVETRTLIKSEPVSPKNGVLPQATGDQKSGGKCETDRRMVAA--RTEPLTP 2114
QS +S S E+ + +SE + + + QA + G + + A R+ L
Sbjct: 46 QSGSSDSDSGSESGSQSESESDTSRENKV-QAKPPKVDGAEFWKSSPSILAVQRSAILKK 104
Query: 2115 NPASKKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSS---------SSSCSHSRSGSSS 2165
++ + H+ S S S+ DS S S S S S S S S+SGS S
Sbjct: 105 QQQQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDS 164
Query: 2166 SSS-----SSCSSASSSSSSSTSSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYDEE 2218
S SSC S S + S+ + + QK+ + D+E
Sbjct: 165 ESEEEREKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEEDDDE 222
Score = 35.8 bits (81), Expect = 0.63
Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 24/135 (17%)
Query: 2128 SESSSDSDSDSERSSCSSRSSS--------------SSSSSSCSHSRSG---------SS 2164
S+S S+S S SE S +SR + SS S + RS
Sbjct: 52 SDSGSESGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAILKKQQQQQQQ 111
Query: 2165 SSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYDEESVASLS 2224
+S +S S SSS+ S SSS + DE+ + D ES
Sbjct: 112 QQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEERE 171
Query: 2225 TTQ-DETQDSFQMNN 2238
+ DET+ ++ N
Sbjct: 172 KSSCDETESDYEPKN 186
Score = 35.0 bits (79), Expect = 1.1
Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 21/168 (12%)
Query: 2720 ESGTEDKKGSDSKE---SEGKTERTESQSSENGGENSVSSSPSTSSTAALNTAAAANPLA 2776
+SG+ GS S S+G + ++ S S++G E S S S S S T+ N A P
Sbjct: 23 DSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSE-SGSQSESESDTSRENKVQAKPPKV 81
Query: 2777 -------LNPLLL----SNILYPGMLLTPGLNLHIPTLSQSNTFDVQNKNSDLGSSKSVE 2825
+P +L S IL + S S +++SD SS E
Sbjct: 82 DGAEFWKSSPSILAVQRSAILKKQQQQQQQQQHQASSNSGSEEDSSSSEDSDDSSS---E 138
Query: 2826 VKEEDSRIKDQEDKGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSE 2873
VK + + +D + G PS ++ +D SE+ S D T S E
Sbjct: 139 VKRKKHKDEDWQMSGSGSPS---QSGSDSESEEEREKSSCDETESDYE 183
Score = 33.5 bits (75), Expect = 3.1
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 2814 KNSDLGSSKSVEVKEEDSRIKDQEDKGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSE 2873
+NS SS+S ++DS G + S + +S+ GS +D+ SGS+S S S
Sbjct: 11 RNSSGESSQS----DDDSGSASGSGSGSSSGSSSDGSSSQSGS--SDSDSGSESGSQSES 64
Query: 2874 DSDSSNED 2881
+SD+S E+
Sbjct: 65 ESDTSREN 72
Score = 32.7 bits (73), Expect = 5.3
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 2127 GSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSS 2186
GS S S SDS+SE R SS + + S S S +
Sbjct: 155 GSPSQSGSDSESE----EEREKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKILGQKK 210
Query: 2187 SSSSSSSEESDSDEEEAQKRES 2208
SS E+ D ++ + KR S
Sbjct: 211 RQIDSSEEDDDEEDYDNDKRSS 232
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 402 bits (1034), Expect = e-111
Identities = 253/643 (39%), Positives = 366/643 (56%), Gaps = 61/643 (9%)
Query: 839 RPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITF 898
R SN+ + + S Y G LR+YQ+ GLNWL+ + N N ILADEMGLGKT+Q+I
Sbjct: 162 RKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIAL 221
Query: 899 L-YEILLTGIRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFR 956
L Y I GP +++ P ST+ NW EF+ W + V+ + G +R + EM
Sbjct: 222 LGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPG 281
Query: 957 DSQGRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLM 1016
+ + +T++EM++ WR ++IDEAHR+KN+ KL E ++
Sbjct: 282 E-----------WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREF 330
Query: 1017 NLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGD---LKTEEQVQKLQAI 1073
+++LLTGTPLQN + EL++LL+FL P F S F F L ++ V++L A+
Sbjct: 331 KSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAV 390
Query: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNL 1133
LKP +LRR+K DVEK L PK+E I + L+ +Q+++Y IL K+ L+ +G+ + L
Sbjct: 391 LKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNS-SGKMDKMRL 449
Query: 1134 VNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPK 1193
+N +M+LRKCCNHPYL GAE P +D H+ + ++GK+V++DKLL K
Sbjct: 450 LNILMQLRKCCNHPYLFDGAEPG---------PPYTTDEHI---VSNSGKMVVLDKLLAK 497
Query: 1194 MKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFV 1253
+K G +VLIFSQM R LDILEDY + + Y Y R+DG+ R+ AI+ F+ P+S +F+
Sbjct: 498 LKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNAPNSSKFI 557
Query: 1254 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYE 1313
F+L TRAGGLGINL +AD I++DSDWNPQ DLQA R HRIGQ K V+V+RL+T N+ E
Sbjct: 558 FMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 617
Query: 1314 REMFDRASLKLGLDKAVLQS--MSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEG 1371
+ +RA +KL LD V+Q + ++SN +L+K+E+ ++R GA +E
Sbjct: 618 ERIVERAEIKLRLDSIVIQQGRLIDQQSN-----KLAKEEMLQMIRHGATHVFASKE--- 669
Query: 1372 SKFCEEDIDQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNF--------- 1422
S+ +EDI IL R K T E R ++S R DI F
Sbjct: 670 SELTDEDITTILERGEKK-TAEMNERLQKMGESSL--RNFRMDIEQSLYKFEGEDYREKQ 726
Query: 1423 ------W---QKWAKKAEIDIEAISGRNSLVIDTPRIRKQTRP 1456
W K +KA ++A R +L + P+I K RP
Sbjct: 727 KLGMVEWIEPPKRERKANYAVDAYF-REALRVSEPKIPKAPRP 768
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 402 bits (1033), Expect = e-111
Identities = 248/634 (39%), Positives = 360/634 (56%), Gaps = 49/634 (7%)
Query: 842 SNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-Y 900
+N+ + + S Y +LR+YQ+ GLNWL+ + N N ILADEMGLGKT+Q+I+ L Y
Sbjct: 162 TNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGY 221
Query: 901 EILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQG 960
I GP +++ P ST+ NW EF+ W +L S +I E +
Sbjct: 222 MKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVP--------TLRSVCLIGDKEQRAAFVRD 273
Query: 961 RIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEH 1020
++ G + +T++EM++ WR ++IDEAHR+KN+ KL E ++ +
Sbjct: 274 VLLPGEW--DVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTN 331
Query: 1021 KVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGD---LKTEEQVQKLQAILKPM 1077
++LLTGTPLQN + EL+SLL+FL P F S F F L ++ V++L +L+P
Sbjct: 332 RLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPF 391
Query: 1078 MLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTM 1137
+LRR+K DVEK L PK+E I V L+ +Q+++Y IL K+ L+ AG+ + L+N +
Sbjct: 392 LLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNS-AGKMDKMRLLNIL 450
Query: 1138 MELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAG 1197
M+LRKCCNHPYL GAE P +D HL + ++GK+V++DKLLPK+K
Sbjct: 451 MQLRKCCNHPYLFDGAEPG---------PPYTTDMHL---VTNSGKMVVLDKLLPKLKEQ 498
Query: 1198 GHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLC 1257
G +VLIFSQM R LDILEDY + + Y Y R+DG+ + RQ +I+ +++P+S +FVF+L
Sbjct: 499 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLS 558
Query: 1258 TRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMF 1317
TRAGGLGINL AD I++DSDWNPQ DLQA R HRIGQ K V+V+R +T N+ E +
Sbjct: 559 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 618
Query: 1318 DRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEE 1377
+RA +KL LD V+Q + N + ++ K E+ ++R GA +E S+ +E
Sbjct: 619 ERAEMKLRLDSIVIQQGRLVDQN---LNKIGKDEMLQMIRHGATHVFASKE---SEITDE 672
Query: 1378 DIDQILLRRTKTITI---------ESEGRGSTFAKASFVASGNRTDISLDDPNFWQKW-- 1426
DID IL R K ES R T S V + D + +W
Sbjct: 673 DIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIE 732
Query: 1427 ----AKKAEIDIEAISGRNSLVIDTPRIRKQTRP 1456
+KA ++A R +L + P+ K RP
Sbjct: 733 PPKRERKANYAVDAYF-REALRVSEPKAPKAPRP 765
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 394 bits (1011), Expect = e-109
Identities = 253/655 (38%), Positives = 366/655 (55%), Gaps = 73/655 (11%)
Query: 839 RPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITF 898
R SN+ + + S Y G LR+YQ+ GLNWL+ + N N ILADEMGLGKT+Q+I
Sbjct: 162 RKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIAL 221
Query: 899 L-YEILLTGIRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFR 956
L Y I GP +++ P ST+ NW EF+ W + V+ + G +R + EM
Sbjct: 222 LGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPG 281
Query: 957 DSQGRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLM 1016
+ + +T++EM++ WR ++IDEAHR+KN+ KL E ++
Sbjct: 282 E-----------WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREF 330
Query: 1017 NLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGD---LKTEEQVQKLQAI 1073
+++LLTGTPLQN + EL++LL+FL P F S F F L ++ V++L A+
Sbjct: 331 KSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAV 390
Query: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNL 1133
LKP +LRR+K DVEK L PK+E I + L+ +Q+++Y IL K+ L+ +G+ + L
Sbjct: 391 LKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNS-SGKMDKMRL 449
Query: 1134 VNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPK 1193
+N +M+LRKCCNHPYL GAE P +D H+ + ++GK+V++DKLL K
Sbjct: 450 LNILMQLRKCCNHPYLFDGAEPG---------PPYTTDEHI---VSNSGKMVVLDKLLAK 497
Query: 1194 MKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQ------------AAI 1241
+K G +VLIFSQM R LDILEDY + + Y Y R+DG+ R+ AI
Sbjct: 498 LKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAI 557
Query: 1242 DRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAV 1301
+ F+ P+S +F+F+L TRAGGLGINL +AD I++DSDWNPQ DLQA R HRIGQ K V
Sbjct: 558 EAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPV 617
Query: 1302 KVYRLVTRNSYEREMFDRASLKLGLDKAVLQS--MSGRESNVGGIQQLSKKEIEDLLRRG 1359
+V+RL+T N+ E + +RA +KL LD V+Q + ++SN +L+K+E+ ++R G
Sbjct: 618 RVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSN-----KLAKEEMLQMIRHG 672
Query: 1360 AYGAIMEEEDEGSKFCEEDIDQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDD 1419
A +E S+ +EDI IL R K T E R ++S R DI
Sbjct: 673 ATHVFASKE---SELTDEDITTILERGEKK-TAEMNERLQKMGESSL--RNFRMDIEQSL 726
Query: 1420 PNF---------------W---QKWAKKAEIDIEAISGRNSLVIDTPRIRKQTRP 1456
F W K +KA ++A R +L + P+I K RP
Sbjct: 727 YKFEGEDYREKQKLGMVEWIEPPKRERKANYAVDAYF-REALRVSEPKIPKAPRP 780
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 363 bits (933), Expect = 1e-99
Identities = 218/535 (40%), Positives = 324/535 (60%), Gaps = 43/535 (8%)
Query: 857 GNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSIT-FLYEILLTGIRGPFLIIA 915
G LR YQLEG+NWL ++ + CIL DEMGLGKT Q+I F+Y GPFLI+
Sbjct: 43 GIHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILC 102
Query: 916 PLSTIANWEREFRTWTD-INVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIIT 974
PLS ++NW+ E + + ++ V Y G R +QQ ++ RF ++T
Sbjct: 103 PLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQD-----------LKQESRFHVLLT 151
Query: 975 TFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVE 1034
T+E+ L L + W +++DEAHRLKN++ L + L ++ +LLTGTP+QN+++
Sbjct: 152 TYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQ 211
Query: 1035 ELFSLLHFLEPLRFPSEST--FMQEFGDLKTE-EQVQKLQAILKPMMLRRLKEDVEKKLA 1091
EL+SLL F+EP F E F+Q + D++ E E +L +L+P +LRR+K +V +L
Sbjct: 212 ELYSLLSFVEPDLFSKEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRVKAEVATELP 271
Query: 1092 PKEETIIEVELTNIQKKYYRAILEKNF-SFLSKGAGQTNVPNLVNTMMELRKCCNHPYLI 1150
K E +I ++ +QKKYY+AIL K+ +F ++ A + + N+++ +LRKC +HPYL
Sbjct: 272 KKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNILS---QLRKCVDHPYLF 328
Query: 1151 KGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRC 1210
G E + P HL +++GKL L+DKLL + +GGH+VL+FSQM +
Sbjct: 329 DGVEPE----------PFEVGDHLT---EASGKLHLLDKLLAFLYSGGHRVLLFSQMTQM 375
Query: 1211 LDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAA 1270
LDIL+DY+ ++ Y YER+DG VRG R AI F + FVFLL TRAGG+G+NLTAA
Sbjct: 376 LDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQPI--FVFLLSTRAGGVGMNLTAA 433
Query: 1271 DTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAV 1330
DT I DSD+NPQNDLQA AR HRIGQNK+VKV RL+ R++ E ++ +A+ KL L +
Sbjct: 434 DTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMI 493
Query: 1331 LQSMSGRESNVGGIQQLSKKEIE--DLLRRGAYGAIMEEEDEGSKFCEEDIDQIL 1383
++ G +G + + +++ ++L+ +G EGS E D++ IL
Sbjct: 494 IE---GGHFTLGAQKPAADADLQLSEILK---FGLDKLLASEGSTMDEIDLESIL 542
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 362 bits (930), Expect = 2e-99
Identities = 230/612 (37%), Positives = 343/612 (56%), Gaps = 64/612 (10%)
Query: 806 EDSTWELKEDVDLAK--IEEFEQLQASRPDTRRLDRPPSNIWKKIDQSRDYKNGNQLREY 863
E S + K+ ++ AK +++ +Q S ++ I +++++ L+ Y
Sbjct: 668 EVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHY 727
Query: 864 QLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIAN 922
QL+GL W++ + N N ILADEMGLGKTIQ+I + Y + + GP+LII PLST++N
Sbjct: 728 QLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSN 787
Query: 923 WEREFRTWTDINVVV-YHGS-LISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMIL 980
W EF W V + Y G+ + R ++ Q + +F ++TT+E I+
Sbjct: 788 WTYEFDKWAPSVVKISYKGTPAMRRSLVPQLR-------------SGKFNVLLTTYEYII 834
Query: 981 GGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLE-HKVLLTGTPLQNTVEELFSL 1039
L I W+ +I+DE HR+KN +CKL + L + ++LLTGTPLQN + EL++L
Sbjct: 835 KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 894
Query: 1040 LHFLEPLRFPSESTFMQEFG----------DLKTEEQV---QKLQAILKPMMLRRLKEDV 1086
L+FL P F S STF Q F DL EE + ++L +L+P +LRRLK++V
Sbjct: 895 LNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV 954
Query: 1087 EKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGA-----GQTNVPNLVNTMMELR 1141
E +L K E +I+ +++ +QK YR + K L+ G+ G+ L+NT+M+LR
Sbjct: 955 ESQLPEKVEYVIKCDMSALQKILYRHMQAKGI-LLTDGSEKDKKGKGGAKTLMNTIMQLR 1013
Query: 1142 KCCNHPYLIKGAEEKI---LGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGG 1198
K CNHPY+ + EE LG N A + +++GK L+D++LPK++A
Sbjct: 1014 KICNHPYMFQHIEESFAEHLGYSNGVINGAE-------LYRASGKFELLDRILPKLRATN 1066
Query: 1199 HKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCT 1258
H+VL+F QM + I+EDY + +LY R+DG + R A + +F++P S F+FLL T
Sbjct: 1067 HRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLST 1126
Query: 1259 RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFD 1318
RAGGLG+NL AADT +IFDSDWNP DLQAQ R HRIGQ V+V RL T NS E ++
Sbjct: 1127 RAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILA 1186
Query: 1319 RASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCE-- 1376
A KL +D+ V+Q+ G Q S RR AI+E E+E + E
Sbjct: 1187 AAKYKLNVDQKVIQA--------GMFDQKSSSH----ERRAFLQAILEHEEENEEEDEVP 1234
Query: 1377 --EDIDQILLRR 1386
E ++Q++ RR
Sbjct: 1235 DDETLNQMIARR 1246
Score = 37.0 bits (84), Expect = 0.28
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 2461 PQGIPDTES------PVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGY 2503
P G P ES PV V + + G L G +APK L+ WL+ +PGY
Sbjct: 579 PDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGY 627
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 362 bits (930), Expect = 2e-99
Identities = 230/612 (37%), Positives = 343/612 (56%), Gaps = 64/612 (10%)
Query: 806 EDSTWELKEDVDLAK--IEEFEQLQASRPDTRRLDRPPSNIWKKIDQSRDYKNGNQLREY 863
E S + K+ ++ AK +++ +Q S ++ I +++++ L+ Y
Sbjct: 668 EVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHY 727
Query: 864 QLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIAN 922
QL+GL W++ + N N ILADEMGLGKTIQ+I + Y + + GP+LII PLST++N
Sbjct: 728 QLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSN 787
Query: 923 WEREFRTWTDINVVV-YHGS-LISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMIL 980
W EF W V + Y G+ + R ++ Q + +F ++TT+E I+
Sbjct: 788 WTYEFDKWAPSVVKISYKGTPAMRRSLVPQLR-------------SGKFNVLLTTYEYII 834
Query: 981 GGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLE-HKVLLTGTPLQNTVEELFSL 1039
L I W+ +I+DE HR+KN +CKL + L + ++LLTGTPLQN + EL++L
Sbjct: 835 KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 894
Query: 1040 LHFLEPLRFPSESTFMQEFG----------DLKTEEQV---QKLQAILKPMMLRRLKEDV 1086
L+FL P F S STF Q F DL EE + ++L +L+P +LRRLK++V
Sbjct: 895 LNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV 954
Query: 1087 EKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGA-----GQTNVPNLVNTMMELR 1141
E +L K E +I+ +++ +QK YR + K L+ G+ G+ L+NT+M+LR
Sbjct: 955 ESQLPEKVEYVIKCDMSALQKILYRHMQAKGI-LLTDGSEKDKKGKGGAKTLMNTIMQLR 1013
Query: 1142 KCCNHPYLIKGAEEKI---LGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGG 1198
K CNHPY+ + EE LG N A + +++GK L+D++LPK++A
Sbjct: 1014 KICNHPYMFQHIEESFAEHLGYSNGVINGAE-------LYRASGKFELLDRILPKLRATN 1066
Query: 1199 HKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCT 1258
H+VL+F QM + I+EDY + +LY R+DG + R A + +F++P S F+FLL T
Sbjct: 1067 HRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLST 1126
Query: 1259 RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFD 1318
RAGGLG+NL AADT +IFDSDWNP DLQAQ R HRIGQ V+V RL T NS E ++
Sbjct: 1127 RAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILA 1186
Query: 1319 RASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCE-- 1376
A KL +D+ V+Q+ G Q S RR AI+E E+E + E
Sbjct: 1187 AAKYKLNVDQKVIQA--------GMFDQKSSSH----ERRAFLQAILEHEEENEEEDEVP 1234
Query: 1377 --EDIDQILLRR 1386
E ++Q++ RR
Sbjct: 1235 DDETLNQMIARR 1246
Score = 37.0 bits (84), Expect = 0.28
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 2461 PQGIPDTES------PVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGY 2503
P G P ES PV V + + G L G +APK L+ WL+ +PGY
Sbjct: 579 PDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGY 627
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 357 bits (915), Expect = 1e-97
Identities = 226/613 (36%), Positives = 335/613 (54%), Gaps = 99/613 (16%)
Query: 850 QSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGIRG 909
Q + G +R YQ+EG+ WL W N N ILADEMGLGKT+Q I + ++ G+ G
Sbjct: 213 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPG 272
Query: 910 PFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYR 968
PFL+ PLST+ NW EF+ +T DI ++YHG+ RQ + + +Y R +I
Sbjct: 273 PFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVR-NIYKRKGTLQI------ 325
Query: 969 FQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTP 1028
+IT+FE+ + L W+ +I+DE HR+KN C+L+ LK N ++K+LLTGTP
Sbjct: 326 HPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTP 385
Query: 1029 LQNTVEELFSLLHFLEPLRFPSESTFMQEFG---------DLKTEEQVQK----LQAILK 1075
LQN + EL+SLL+FL P F +F F D+ +E+ Q L IL
Sbjct: 386 LQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILT 445
Query: 1076 PMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEK------------------- 1116
P +LRRLK DV ++ PK E ++ L+ Q+ +Y AI+ +
Sbjct: 446 PFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPT 505
Query: 1117 -----------NFSFLS--------------------KGAGQTNVP-------NLVNTMM 1138
N+S + + + N+P L N MM
Sbjct: 506 GRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMM 565
Query: 1139 ELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGG 1198
LRKCCNHPYLI+ + + EF+ + ++ ++GK +++D++LP++K G
Sbjct: 566 LLRKCCNHPYLIEYPIDPVTQEFKID----------EELVTNSGKFLILDRMLPELKKRG 615
Query: 1199 HKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCT 1258
HKVL+FSQM LDIL DY + + + R+DG + + R+ + F+ D + F+FL+ T
Sbjct: 616 HKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNT-DPEVFIFLVST 674
Query: 1259 RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFD 1318
RAGGLGINLTAADT II+DSDWNPQ+DLQAQ RCHRIGQ K V VYRLVT N+ ++++ +
Sbjct: 675 RAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVE 734
Query: 1319 RASLKLGLDKAVLQS--MSGRESNVGGIQQ-LSKKEIEDLLRRGAYGAIMEEEDEGSK-- 1373
RA+ K L+K ++ G +S + + L KE+ +LL+ Y E E +GS+
Sbjct: 735 RAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDY----EREIKGSREK 790
Query: 1374 -FCEEDIDQILLR 1385
++D++ +L R
Sbjct: 791 VISDKDLELLLDR 803
Score = 32.7 bits (73), Expect = 5.3
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 494 SGTYTKLQNTQVRVMSEKKQRKKVESESKQEKAN-RIISEAIAKAKERGERNIPRVMSPE 552
S Y+K T++ ++Q+KK + E K+E + +I ++E+ R E
Sbjct: 75 SNIYSKFLLTKMEQQQLEEQKKKEKLERKKESLKVKKGKNSIDASEEKPVMRKKRGREDE 134
Query: 553 NFPTASVEGKEEKKGRRMKSKPKDKD--SKKTKTCSKLKEKTKIGKLII 599
++ + V KEE K+K +++D S T C + +K K II
Sbjct: 135 SYNISEVMSKEEILSVAKKNKKENEDENSSSTNLCVEDLQKNKDSNSII 183
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 354 bits (909), Expect = 6e-97
Identities = 227/598 (37%), Positives = 333/598 (55%), Gaps = 58/598 (9%)
Query: 813 KEDVDLAKIEEFEQLQASRPDTRRLDRPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLL 872
K+DVD +E+ QA + + +++D+ L++YQ++GL WL+
Sbjct: 711 KQDVD----DEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLV 766
Query: 873 FNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWT 931
+ N N ILADEMGLGKTIQ+I + Y + I GPFLII PLST++NW EF W
Sbjct: 767 SLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA 826
Query: 932 DINVVV-YHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIE 990
V V Y GS +R+ +R +F ++TT+E I+ L I
Sbjct: 827 PSVVKVSYKGSPAARRAFVPQ-----------LRSG-KFNVLLTTYEYIIKDKHILAKIR 874
Query: 991 WRCVIIDEAHRLKNKNCKLLEGLKLMNLE-HKVLLTGTPLQNTVEELFSLLHFLEPLRFP 1049
W+ +I+DE HR+KN +CKL + L + ++LLTGTPLQN + EL++LL+FL P F
Sbjct: 875 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFK 934
Query: 1050 SESTFMQEFG----------DLKTEEQV---QKLQAILKPMMLRRLKEDVEKKLAPKEET 1096
S STF Q F DL EE + ++L +L+P +LRRLK++VE +L K E
Sbjct: 935 SCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEY 994
Query: 1097 IIEVELTNIQKKYYRAILEKNFSFLSKGA-----GQTNVPNLVNTMMELRKCCNHPYLIK 1151
+I+ +++ +Q+ YR + K L+ G+ G+ L+NT+M+LRK CNHPY+ +
Sbjct: 995 VIKCDMSALQRVLYRHMQAKGV-LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1053
Query: 1152 GAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCL 1211
EE F + + +++GK L+D++LPK++A HKVL+F QM +
Sbjct: 1054 HIEES----FSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLM 1109
Query: 1212 DILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAAD 1271
I+EDY ++ + Y R+DG + R + F++P S+ F+FLL TRAGGLG+NL +AD
Sbjct: 1110 TIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSAD 1169
Query: 1272 TCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVL 1331
T IIFDSDWNP DLQAQ R HRIGQ V+V RL T NS E ++ A KL +D+ V+
Sbjct: 1170 TVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
Query: 1332 QSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCE----EDIDQILLR 1385
Q+ G Q S RR AI+E E++ + E E ++Q++ R
Sbjct: 1230 QA--------GMFDQKSSSH----ERRAFLQAILEHEEQDEEEDEVPDDETVNQMIAR 1275
Score = 43.9 bits (102), Expect = 0.002
Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 32/207 (15%)
Query: 2451 GINPALSYTQPQGIPDTES------PVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGYV 2504
G PA+ P G P E+ PV VI+++ G L G DAPK LE WL+ +PGY
Sbjct: 594 GQTPAIG---PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGY- 649
Query: 2505 EDLGAFIPRMQLHE--GRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAP 2562
PR E +++ P +L EE+ +K+ +
Sbjct: 650 ----EVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEK---------KKIPDPDSD 696
Query: 2563 PLKDL-CRFLKENSEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSG 2621
+ ++ R + EN++ V E+G V Q+ L + V E V ++ +G
Sbjct: 697 DVSEVDARHIIENAKQDVDDEYG--VSQA--LARGLQSYYAVAHAVTERVDKQSALMVNG 752
Query: 2622 IAKATAAAAAASATSVSGNPLLANGLL 2648
+ K S+ N L NG+L
Sbjct: 753 VLKQYQIKGLEWLVSLYNNNL--NGIL 777
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 354 bits (909), Expect = 6e-97
Identities = 227/598 (37%), Positives = 333/598 (55%), Gaps = 58/598 (9%)
Query: 813 KEDVDLAKIEEFEQLQASRPDTRRLDRPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLL 872
K+DVD +E+ QA + + +++D+ L++YQ++GL WL+
Sbjct: 711 KQDVD----DEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLV 766
Query: 873 FNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWT 931
+ N N ILADEMGLGKTIQ+I + Y + I GPFLII PLST++NW EF W
Sbjct: 767 SLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA 826
Query: 932 DINVVV-YHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIE 990
V V Y GS +R+ +R +F ++TT+E I+ L I
Sbjct: 827 PSVVKVSYKGSPAARRAFVPQ-----------LRSG-KFNVLLTTYEYIIKDKHILAKIR 874
Query: 991 WRCVIIDEAHRLKNKNCKLLEGLKLMNLE-HKVLLTGTPLQNTVEELFSLLHFLEPLRFP 1049
W+ +I+DE HR+KN +CKL + L + ++LLTGTPLQN + EL++LL+FL P F
Sbjct: 875 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFK 934
Query: 1050 SESTFMQEFG----------DLKTEEQV---QKLQAILKPMMLRRLKEDVEKKLAPKEET 1096
S STF Q F DL EE + ++L +L+P +LRRLK++VE +L K E
Sbjct: 935 SCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEY 994
Query: 1097 IIEVELTNIQKKYYRAILEKNFSFLSKGA-----GQTNVPNLVNTMMELRKCCNHPYLIK 1151
+I+ +++ +Q+ YR + K L+ G+ G+ L+NT+M+LRK CNHPY+ +
Sbjct: 995 VIKCDMSALQRVLYRHMQAKGV-LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1053
Query: 1152 GAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCL 1211
EE F + + +++GK L+D++LPK++A HKVL+F QM +
Sbjct: 1054 HIEES----FSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLM 1109
Query: 1212 DILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAAD 1271
I+EDY ++ + Y R+DG + R + F++P S+ F+FLL TRAGGLG+NL +AD
Sbjct: 1110 TIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSAD 1169
Query: 1272 TCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVL 1331
T IIFDSDWNP DLQAQ R HRIGQ V+V RL T NS E ++ A KL +D+ V+
Sbjct: 1170 TVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
Query: 1332 QSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCE----EDIDQILLR 1385
Q+ G Q S RR AI+E E++ + E E ++Q++ R
Sbjct: 1230 QA--------GMFDQKSSSH----ERRAFLQAILEHEEQDEEEDEVPDDETVNQMIAR 1275
Score = 43.9 bits (102), Expect = 0.002
Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 32/207 (15%)
Query: 2451 GINPALSYTQPQGIPDTES------PVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGYV 2504
G PA+ P G P E+ PV VI+++ G L G DAPK LE WL+ +PGY
Sbjct: 594 GQTPAIG---PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGY- 649
Query: 2505 EDLGAFIPRMQLHE--GRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAP 2562
PR E +++ P +L EE+ +K+ +
Sbjct: 650 ----EVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEK---------KKIPDPDSD 696
Query: 2563 PLKDL-CRFLKENSEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSG 2621
+ ++ R + EN++ V E+G V Q+ L + V E V ++ +G
Sbjct: 697 DVSEVDARHIIENAKQDVDDEYG--VSQA--LARGLQSYYAVAHAVTERVDKQSALMVNG 752
Query: 2622 IAKATAAAAAASATSVSGNPLLANGLL 2648
+ K S+ N L NG+L
Sbjct: 753 VLKQYQIKGLEWLVSLYNNNL--NGIL 777
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 354 bits (909), Expect = 6e-97
Identities = 227/598 (37%), Positives = 333/598 (55%), Gaps = 58/598 (9%)
Query: 813 KEDVDLAKIEEFEQLQASRPDTRRLDRPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLL 872
K+DVD +E+ QA + + +++D+ L++YQ++GL WL+
Sbjct: 711 KQDVD----DEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLV 766
Query: 873 FNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWT 931
+ N N ILADEMGLGKTIQ+I + Y + I GPFLII PLST++NW EF W
Sbjct: 767 SLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA 826
Query: 932 DINVVV-YHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIE 990
V V Y GS +R+ +R +F ++TT+E I+ L I
Sbjct: 827 PSVVKVSYKGSPAARRAFVPQ-----------LRSG-KFNVLLTTYEYIIKDKHILAKIR 874
Query: 991 WRCVIIDEAHRLKNKNCKLLEGLKLMNLE-HKVLLTGTPLQNTVEELFSLLHFLEPLRFP 1049
W+ +I+DE HR+KN +CKL + L + ++LLTGTPLQN + EL++LL+FL P F
Sbjct: 875 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFK 934
Query: 1050 SESTFMQEFG----------DLKTEEQV---QKLQAILKPMMLRRLKEDVEKKLAPKEET 1096
S STF Q F DL EE + ++L +L+P +LRRLK++VE +L K E
Sbjct: 935 SCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEY 994
Query: 1097 IIEVELTNIQKKYYRAILEKNFSFLSKGA-----GQTNVPNLVNTMMELRKCCNHPYLIK 1151
+I+ +++ +Q+ YR + K L+ G+ G+ L+NT+M+LRK CNHPY+ +
Sbjct: 995 VIKCDMSALQRVLYRHMQAKGV-LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1053
Query: 1152 GAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCL 1211
EE F + + +++GK L+D++LPK++A HKVL+F QM +
Sbjct: 1054 HIEES----FSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLM 1109
Query: 1212 DILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAAD 1271
I+EDY ++ + Y R+DG + R + F++P S+ F+FLL TRAGGLG+NL +AD
Sbjct: 1110 TIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSAD 1169
Query: 1272 TCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVL 1331
T IIFDSDWNP DLQAQ R HRIGQ V+V RL T NS E ++ A KL +D+ V+
Sbjct: 1170 TVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
Query: 1332 QSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCE----EDIDQILLR 1385
Q+ G Q S RR AI+E E++ + E E ++Q++ R
Sbjct: 1230 QA--------GMFDQKSSSH----ERRAFLQAILEHEEQDEEEDEVPDDETVNQMIAR 1275
Score = 43.9 bits (102), Expect = 0.002
Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 32/207 (15%)
Query: 2451 GINPALSYTQPQGIPDTES------PVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGYV 2504
G PA+ P G P E+ PV VI+++ G L G DAPK LE WL+ +PGY
Sbjct: 594 GQTPAIG---PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGY- 649
Query: 2505 EDLGAFIPRMQLHE--GRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAP 2562
PR E +++ P +L EE+ +K+ +
Sbjct: 650 ----EVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEK---------KKIPDPDSD 696
Query: 2563 PLKDL-CRFLKENSEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSG 2621
+ ++ R + EN++ V E+G V Q+ L + V E V ++ +G
Sbjct: 697 DVSEVDARHIIENAKQDVDDEYG--VSQA--LARGLQSYYAVAHAVTERVDKQSALMVNG 752
Query: 2622 IAKATAAAAAASATSVSGNPLLANGLL 2648
+ K S+ N L NG+L
Sbjct: 753 VLKQYQIKGLEWLVSLYNNNL--NGIL 777
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 354 bits (909), Expect = 6e-97
Identities = 227/598 (37%), Positives = 333/598 (55%), Gaps = 58/598 (9%)
Query: 813 KEDVDLAKIEEFEQLQASRPDTRRLDRPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLL 872
K+DVD +E+ QA + + +++D+ L++YQ++GL WL+
Sbjct: 711 KQDVD----DEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLV 766
Query: 873 FNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWT 931
+ N N ILADEMGLGKTIQ+I + Y + I GPFLII PLST++NW EF W
Sbjct: 767 SLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA 826
Query: 932 DINVVV-YHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIE 990
V V Y GS +R+ +R +F ++TT+E I+ L I
Sbjct: 827 PSVVKVSYKGSPAARRAFVPQ-----------LRSG-KFNVLLTTYEYIIKDKHILAKIR 874
Query: 991 WRCVIIDEAHRLKNKNCKLLEGLKLMNLE-HKVLLTGTPLQNTVEELFSLLHFLEPLRFP 1049
W+ +I+DE HR+KN +CKL + L + ++LLTGTPLQN + EL++LL+FL P F
Sbjct: 875 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFK 934
Query: 1050 SESTFMQEFG----------DLKTEEQV---QKLQAILKPMMLRRLKEDVEKKLAPKEET 1096
S STF Q F DL EE + ++L +L+P +LRRLK++VE +L K E
Sbjct: 935 SCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEY 994
Query: 1097 IIEVELTNIQKKYYRAILEKNFSFLSKGA-----GQTNVPNLVNTMMELRKCCNHPYLIK 1151
+I+ +++ +Q+ YR + K L+ G+ G+ L+NT+M+LRK CNHPY+ +
Sbjct: 995 VIKCDMSALQRVLYRHMQAKGV-LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1053
Query: 1152 GAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCL 1211
EE F + + +++GK L+D++LPK++A HKVL+F QM +
Sbjct: 1054 HIEES----FSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLM 1109
Query: 1212 DILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAAD 1271
I+EDY ++ + Y R+DG + R + F++P S+ F+FLL TRAGGLG+NL +AD
Sbjct: 1110 TIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSAD 1169
Query: 1272 TCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVL 1331
T IIFDSDWNP DLQAQ R HRIGQ V+V RL T NS E ++ A KL +D+ V+
Sbjct: 1170 TVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
Query: 1332 QSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCE----EDIDQILLR 1385
Q+ G Q S RR AI+E E++ + E E ++Q++ R
Sbjct: 1230 QA--------GMFDQKSSSH----ERRAFLQAILEHEEQDEEEDEVPDDETVNQMIAR 1275
Score = 43.9 bits (102), Expect = 0.002
Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 32/207 (15%)
Query: 2451 GINPALSYTQPQGIPDTES------PVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGYV 2504
G PA+ P G P E+ PV VI+++ G L G DAPK LE WL+ +PGY
Sbjct: 594 GQTPAIG---PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGY- 649
Query: 2505 EDLGAFIPRMQLHE--GRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAP 2562
PR E +++ P +L EE+ +K+ +
Sbjct: 650 ----EVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEK---------KKIPDPDSD 696
Query: 2563 PLKDL-CRFLKENSEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSG 2621
+ ++ R + EN++ V E+G V Q+ L + V E V ++ +G
Sbjct: 697 DVSEVDARHIIENAKQDVDDEYG--VSQA--LARGLQSYYAVAHAVTERVDKQSALMVNG 752
Query: 2622 IAKATAAAAAASATSVSGNPLLANGLL 2648
+ K S+ N L NG+L
Sbjct: 753 VLKQYQIKGLEWLVSLYNNNL--NGIL 777
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 354 bits (908), Expect = 8e-97
Identities = 226/585 (38%), Positives = 327/585 (55%), Gaps = 55/585 (9%)
Query: 813 KEDVDLAKIEEFEQLQASRPDTRRLDRPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLL 872
K+DVD +E+ QA + + +++D+ L++YQ++GL WL+
Sbjct: 711 KQDVD----DEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLV 766
Query: 873 FNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWT 931
+ N N ILADEMGLGKTIQ+I + Y + I GPFLII PLST++NW EF W
Sbjct: 767 SLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA 826
Query: 932 DINVVV-YHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIE 990
V V Y GS +R+ +R +F ++TT+E I+ L I
Sbjct: 827 PSVVKVSYKGSPAARRAFVPQ-----------LRSG-KFNVLLTTYEYIIKDKHILAKIR 874
Query: 991 WRCVIIDEAHRLKNKNCKLLEGLKLMNLE-HKVLLTGTPLQNTVEELFSLLHFLEPLRFP 1049
W+ +I+DE HR+KN +CKL + L + ++LLTGTPLQN + EL++LL+FL P F
Sbjct: 875 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFK 934
Query: 1050 SESTFMQEFG----------DLKTEEQV---QKLQAILKPMMLRRLKEDVEKKLAPKEET 1096
S STF Q F DL EE + ++L +L+P +LRRLK++VE +L K E
Sbjct: 935 SCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEY 994
Query: 1097 IIEVELTNIQKKYYRAILEKNFSFLSKGA-----GQTNVPNLVNTMMELRKCCNHPYLIK 1151
+I+ +++ +Q+ YR + K L+ G+ G+ L+NT+M+LRK CNHPY+ +
Sbjct: 995 VIKCDMSALQRVLYRHMQAKGV-LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1053
Query: 1152 GAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCL 1211
EE F + + +++GK L+D++LPK++A HKVL+F QM +
Sbjct: 1054 HIEES----FSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLM 1109
Query: 1212 DILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAAD 1271
I+EDY ++ + Y R+DG + R + F++P S+ F+FLL TRAGGLG+NL +AD
Sbjct: 1110 TIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSAD 1169
Query: 1272 TCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVL 1331
T IIFDSDWNP DLQAQ R HRIGQ V+V RL T NS E ++ A KL +D+ V+
Sbjct: 1170 TVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
Query: 1332 QSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIME-EEDEGSKFC 1375
Q+ G Q S RR AI+E EE + S+ C
Sbjct: 1230 QA--------GMFDQKSSSH----ERRAFLQAILEHEEQDESRHC 1262
Score = 43.9 bits (102), Expect = 0.002
Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 32/207 (15%)
Query: 2451 GINPALSYTQPQGIPDTES------PVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGYV 2504
G PA+ P G P E+ PV VI+++ G L G DAPK LE WL+ +PGY
Sbjct: 594 GQTPAIG---PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGY- 649
Query: 2505 EDLGAFIPRMQLHE--GRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAP 2562
PR E +++ P +L EE+ +K+ +
Sbjct: 650 ----EVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEK---------KKIPDPDSD 696
Query: 2563 PLKDL-CRFLKENSEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSG 2621
+ ++ R + EN++ V E+G V Q+ L + V E V ++ +G
Sbjct: 697 DVSEVDARHIIENAKQDVDDEYG--VSQA--LARGLQSYYAVAHAVTERVDKQSALMVNG 752
Query: 2622 IAKATAAAAAASATSVSGNPLLANGLL 2648
+ K S+ N L NG+L
Sbjct: 753 VLKQYQIKGLEWLVSLYNNNL--NGIL 777
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 354 bits (908), Expect = 8e-97
Identities = 226/585 (38%), Positives = 327/585 (55%), Gaps = 55/585 (9%)
Query: 813 KEDVDLAKIEEFEQLQASRPDTRRLDRPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLL 872
K+DVD +E+ QA + + +++D+ L++YQ++GL WL+
Sbjct: 711 KQDVD----DEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLV 766
Query: 873 FNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWT 931
+ N N ILADEMGLGKTIQ+I + Y + I GPFLII PLST++NW EF W
Sbjct: 767 SLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA 826
Query: 932 DINVVV-YHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIE 990
V V Y GS +R+ +R +F ++TT+E I+ L I
Sbjct: 827 PSVVKVSYKGSPAARRAFVPQ-----------LRSG-KFNVLLTTYEYIIKDKHILAKIR 874
Query: 991 WRCVIIDEAHRLKNKNCKLLEGLKLMNLE-HKVLLTGTPLQNTVEELFSLLHFLEPLRFP 1049
W+ +I+DE HR+KN +CKL + L + ++LLTGTPLQN + EL++LL+FL P F
Sbjct: 875 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFK 934
Query: 1050 SESTFMQEFG----------DLKTEEQV---QKLQAILKPMMLRRLKEDVEKKLAPKEET 1096
S STF Q F DL EE + ++L +L+P +LRRLK++VE +L K E
Sbjct: 935 SCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEY 994
Query: 1097 IIEVELTNIQKKYYRAILEKNFSFLSKGA-----GQTNVPNLVNTMMELRKCCNHPYLIK 1151
+I+ +++ +Q+ YR + K L+ G+ G+ L+NT+M+LRK CNHPY+ +
Sbjct: 995 VIKCDMSALQRVLYRHMQAKGV-LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1053
Query: 1152 GAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCL 1211
EE F + + +++GK L+D++LPK++A HKVL+F QM +
Sbjct: 1054 HIEES----FSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLM 1109
Query: 1212 DILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAAD 1271
I+EDY ++ + Y R+DG + R + F++P S+ F+FLL TRAGGLG+NL +AD
Sbjct: 1110 TIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSAD 1169
Query: 1272 TCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVL 1331
T IIFDSDWNP DLQAQ R HRIGQ V+V RL T NS E ++ A KL +D+ V+
Sbjct: 1170 TVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
Query: 1332 QSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIME-EEDEGSKFC 1375
Q+ G Q S RR AI+E EE + S+ C
Sbjct: 1230 QA--------GMFDQKSSSH----ERRAFLQAILEHEEQDESRHC 1262
Score = 43.9 bits (102), Expect = 0.002
Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 32/207 (15%)
Query: 2451 GINPALSYTQPQGIPDTES------PVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGYV 2504
G PA+ P G P E+ PV VI+++ G L G DAPK LE WL+ +PGY
Sbjct: 594 GQTPAIG---PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGY- 649
Query: 2505 EDLGAFIPRMQLHE--GRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAP 2562
PR E +++ P +L EE+ +K+ +
Sbjct: 650 ----EVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEK---------KKIPDPDSD 696
Query: 2563 PLKDL-CRFLKENSEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSG 2621
+ ++ R + EN++ V E+G V Q+ L + V E V ++ +G
Sbjct: 697 DVSEVDARHIIENAKQDVDDEYG--VSQA--LARGLQSYYAVAHAVTERVDKQSALMVNG 752
Query: 2622 IAKATAAAAAASATSVSGNPLLANGLL 2648
+ K S+ N L NG+L
Sbjct: 753 VLKQYQIKGLEWLVSLYNNNL--NGIL 777
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 354 bits (908), Expect = 8e-97
Identities = 226/585 (38%), Positives = 327/585 (55%), Gaps = 55/585 (9%)
Query: 813 KEDVDLAKIEEFEQLQASRPDTRRLDRPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLL 872
K+DVD +E+ QA + + +++D+ L++YQ++GL WL+
Sbjct: 711 KQDVD----DEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLV 766
Query: 873 FNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWT 931
+ N N ILADEMGLGKTIQ+I + Y + I GPFLII PLST++NW EF W
Sbjct: 767 SLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA 826
Query: 932 DINVVV-YHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIE 990
V V Y GS +R+ +R +F ++TT+E I+ L I
Sbjct: 827 PSVVKVSYKGSPAARRAFVPQ-----------LRSG-KFNVLLTTYEYIIKDKHILAKIR 874
Query: 991 WRCVIIDEAHRLKNKNCKLLEGLKLMNLE-HKVLLTGTPLQNTVEELFSLLHFLEPLRFP 1049
W+ +I+DE HR+KN +CKL + L + ++LLTGTPLQN + EL++LL+FL P F
Sbjct: 875 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFK 934
Query: 1050 SESTFMQEFG----------DLKTEEQV---QKLQAILKPMMLRRLKEDVEKKLAPKEET 1096
S STF Q F DL EE + ++L +L+P +LRRLK++VE +L K E
Sbjct: 935 SCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEY 994
Query: 1097 IIEVELTNIQKKYYRAILEKNFSFLSKGA-----GQTNVPNLVNTMMELRKCCNHPYLIK 1151
+I+ +++ +Q+ YR + K L+ G+ G+ L+NT+M+LRK CNHPY+ +
Sbjct: 995 VIKCDMSALQRVLYRHMQAKGV-LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1053
Query: 1152 GAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCL 1211
EE F + + +++GK L+D++LPK++A HKVL+F QM +
Sbjct: 1054 HIEES----FSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLM 1109
Query: 1212 DILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAAD 1271
I+EDY ++ + Y R+DG + R + F++P S+ F+FLL TRAGGLG+NL +AD
Sbjct: 1110 TIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSAD 1169
Query: 1272 TCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVL 1331
T IIFDSDWNP DLQAQ R HRIGQ V+V RL T NS E ++ A KL +D+ V+
Sbjct: 1170 TVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
Query: 1332 QSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIME-EEDEGSKFC 1375
Q+ G Q S RR AI+E EE + S+ C
Sbjct: 1230 QA--------GMFDQKSSSH----ERRAFLQAILEHEEQDESRHC 1262
Score = 43.9 bits (102), Expect = 0.002
Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 32/207 (15%)
Query: 2451 GINPALSYTQPQGIPDTES------PVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGYV 2504
G PA+ P G P E+ PV VI+++ G L G DAPK LE WL+ +PGY
Sbjct: 594 GQTPAIG---PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGY- 649
Query: 2505 EDLGAFIPRMQLHE--GRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAP 2562
PR E +++ P +L EE+ +K+ +
Sbjct: 650 ----EVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEK---------KKIPDPDSD 696
Query: 2563 PLKDL-CRFLKENSEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSG 2621
+ ++ R + EN++ V E+G V Q+ L + V E V ++ +G
Sbjct: 697 DVSEVDARHIIENAKQDVDDEYG--VSQA--LARGLQSYYAVAHAVTERVDKQSALMVNG 752
Query: 2622 IAKATAAAAAASATSVSGNPLLANGLL 2648
+ K S+ N L NG+L
Sbjct: 753 VLKQYQIKGLEWLVSLYNNNL--NGIL 777
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 269 bits (687), Expect = 3e-71
Identities = 187/547 (34%), Positives = 279/547 (51%), Gaps = 72/547 (13%)
Query: 848 IDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGI 907
I+Q L+ YQ GLNWL + N ILADEMGLGKTIQ+I FL + G
Sbjct: 485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN 544
Query: 908 RGPFLIIAPLSTIANWEREFRTW-TDINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGA 966
GP LI+ P STI NW RE W + V+ Y+GS R+ I ++ ++ R
Sbjct: 545 NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQI-RFNIHSRYED------- 596
Query: 967 YRFQAIITTFEMILGGCGE---LNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL 1023
+ I+TT+ + + ++ I DE H LKN + L +N +++L
Sbjct: 597 --YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLL 654
Query: 1024 LTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKT----------EEQVQKLQAI 1073
LTGTP+QN + EL SLL+F+ P F S ++ ++ KT +E++ + I
Sbjct: 655 LTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQI 714
Query: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAI---LEKNFSFLSKGAGQTNV 1130
+KP +LRR+KE+V K+L PK++ I ++ Q++ Y + L+K+ + L K
Sbjct: 715 IKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNT----- 769
Query: 1131 PNLVNTMMELRKCCNHPYL---------IKGAEEKILGE-----------FRDTYNPAAS 1170
+ N MM+LRK NHP L +K + +L E F D +
Sbjct: 770 -EMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDM--EVMT 826
Query: 1171 DFHLQA----------------MIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDIL 1214
DF L +I +GK ++ +L ++K G +V++FSQ LDIL
Sbjct: 827 DFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDIL 886
Query: 1215 EDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCI 1274
E L H ++ Y R+DG+ + + R ID F+ D D FVFLL T+AGGLGINLT+A+ I
Sbjct: 887 EVLLKHHQHRYLRLDGKTQISERIHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVI 945
Query: 1275 IFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSM 1334
+ D D NP ND QA+ RCHR+GQ K V V +L+++ + E M KL L++ +
Sbjct: 946 LHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVD 1005
Query: 1335 SGRESNV 1341
G E ++
Sbjct: 1006 EGDEGSM 1012
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 268 bits (686), Expect = 4e-71
Identities = 184/544 (33%), Positives = 277/544 (50%), Gaps = 64/544 (11%)
Query: 848 IDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGI 907
I+Q L+ YQ GLNWL + N ILADEMGLGKTIQ+I FL + G
Sbjct: 485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN 544
Query: 908 RGPFLIIAPLSTIANWEREFRTW-TDINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGA 966
GP LI+ P STI NW RE W + V+ Y+GS R+ I ++ ++ R
Sbjct: 545 NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQI-RFNIHSRYED------- 596
Query: 967 YRFQAIITTFEMILGGCGE---LNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL 1023
+ I+TT+ + + ++ I DE H LKN + L +N +++L
Sbjct: 597 --YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLL 654
Query: 1024 LTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKT----------EEQVQKLQAI 1073
LTGTP+QN + EL SLL+F+ P F S ++ ++ KT +E++ + I
Sbjct: 655 LTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQI 714
Query: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNL 1133
+KP +LRR+KE+V K+L PK++ I ++ Q++ Y + + ++ + N +
Sbjct: 715 IKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-EM 773
Query: 1134 VNTMMELRKCCNHPYL---------IKGAEEKILGE-----------FRDTYNPAASDFH 1173
N MM+LRK NHP L +K + +L E F D +DF
Sbjct: 774 CNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDM--EVMTDFE 831
Query: 1174 LQA----------------MIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDY 1217
L +I +GK ++ +L ++K G +V++FSQ LDILE
Sbjct: 832 LHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVL 891
Query: 1218 LIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFD 1277
L H ++ Y R+DG+ + + R ID F+ D D FVFLL T+AGGLGINLT+A+ I+ D
Sbjct: 892 LKHHQHRYLRLDGKTQISERIHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHD 950
Query: 1278 SDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGR 1337
D NP ND QA+ RCHR+GQ K V V +L+++ + E M KL L++ + G
Sbjct: 951 IDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGD 1010
Query: 1338 ESNV 1341
E ++
Sbjct: 1011 EGSM 1014
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 268 bits (686), Expect = 4e-71
Identities = 184/544 (33%), Positives = 277/544 (50%), Gaps = 64/544 (11%)
Query: 848 IDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGI 907
I+Q L+ YQ GLNWL + N ILADEMGLGKTIQ+I FL + G
Sbjct: 485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN 544
Query: 908 RGPFLIIAPLSTIANWEREFRTW-TDINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGA 966
GP LI+ P STI NW RE W + V+ Y+GS R+ I ++ ++ R
Sbjct: 545 NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQI-RFNIHSRYED------- 596
Query: 967 YRFQAIITTFEMILGGCGE---LNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL 1023
+ I+TT+ + + ++ I DE H LKN + L +N +++L
Sbjct: 597 --YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLL 654
Query: 1024 LTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKT----------EEQVQKLQAI 1073
LTGTP+QN + EL SLL+F+ P F S ++ ++ KT +E++ + I
Sbjct: 655 LTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQI 714
Query: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNL 1133
+KP +LRR+KE+V K+L PK++ I ++ Q++ Y + + ++ + N +
Sbjct: 715 IKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-EM 773
Query: 1134 VNTMMELRKCCNHPYL---------IKGAEEKILGE-----------FRDTYNPAASDFH 1173
N MM+LRK NHP L +K + +L E F D +DF
Sbjct: 774 CNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDM--EVMTDFE 831
Query: 1174 LQA----------------MIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDY 1217
L +I +GK ++ +L ++K G +V++FSQ LDILE
Sbjct: 832 LHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVL 891
Query: 1218 LIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFD 1277
L H ++ Y R+DG+ + + R ID F+ D D FVFLL T+AGGLGINLT+A+ I+ D
Sbjct: 892 LKHHQHRYLRLDGKTQISERIHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHD 950
Query: 1278 SDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGR 1337
D NP ND QA+ RCHR+GQ K V V +L+++ + E M KL L++ + G
Sbjct: 951 IDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGD 1010
Query: 1338 ESNV 1341
E ++
Sbjct: 1011 EGSM 1014
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 245 bits (626), Expect = 4e-64
Identities = 168/511 (32%), Positives = 258/511 (50%), Gaps = 55/511 (10%)
Query: 859 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGIR---------- 908
+L +YQ G+ WL + IL DEMGLGKTIQ I FL + + IR
Sbjct: 506 KLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEG 565
Query: 909 -GPFLIIAPLSTIANWEREFRTW-TDINVVVYH--GSLISRQMIQQYEMYFRDSQGRIIR 964
GP +I+ P + + W +EF TW V + H GS ++ E RD
Sbjct: 566 LGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKK-----EKLIRDV------ 614
Query: 965 GAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLL 1024
A+ +IT++ I +++ +W VI+DE H+++N N + K H+++L
Sbjct: 615 -AHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIIL 673
Query: 1025 TGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEF------GDLKTEEQVQK--------- 1069
+G+P+QN + EL+SL F+ P + + FM++F G VQ
Sbjct: 674 SGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACV 733
Query: 1070 LQAILKPMMLRRLKEDVEKKLA--PKEETIIEVELTNIQKKYYRAILE-KNFSFLSKGAG 1126
L+ + P +LRR+K DV+ L+ K E ++ LT+ Q K Y+ ++ K + G
Sbjct: 734 LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEM 793
Query: 1127 QTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVL 1186
Q + + ++ LRK CNHP L G + + G D + + +GK+++
Sbjct: 794 Q-----IFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYW-----KRSGKMIV 843
Query: 1187 IDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSK 1246
++ LL G +VL+FSQ + LDILE +L ++Y Y ++DG RQ I R+++
Sbjct: 844 VESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNE 903
Query: 1247 PDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRL 1306
D+ FVFLL TR GGLG+NLT A+ +I+D DWNP D QA+ R RIGQ K V VYRL
Sbjct: 904 -DTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRL 962
Query: 1307 VTRNSYEREMFDRASLKLGLDKAVLQSMSGR 1337
+T + E +++ R K L VL+ R
Sbjct: 963 LTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 993
>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
Length = 712
Score = 226 bits (576), Expect = 3e-58
Identities = 164/578 (28%), Positives = 269/578 (46%), Gaps = 95/578 (16%)
Query: 840 PPSNIWKKIDQSRD---YKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSI 896
P S++ K+ + D Y LR+YQ EG +L ++ + CIL D+MGLGKT+Q I
Sbjct: 111 PSSSVAFKLSDNGDSIPYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVI 170
Query: 897 TFLY-----------------EILLTGIRGP---------FLIIAPLSTIANWEREFRTW 930
+FL E LL ++ FLI+APLS + NW+ E TW
Sbjct: 171 SFLAAVLHKKGTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTW 230
Query: 931 TDINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIE 990
V V HG+ ++I+ + + + +TT+E + ELN++E
Sbjct: 231 GYFRVTVLHGNRKDNELIRVKQR--------------KCEIALTTYETLRLCLDELNSLE 276
Query: 991 WRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPS 1050
W VI+DEAHR+KN ++ E +K + ++ LTGT LQN ++EL+ ++ + P S
Sbjct: 277 WSAVIVDEAHRIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGS 336
Query: 1051 ESTFMQEFGDLKTEEQ---------------VQKLQAILKPMMLRRLKEDVEKKLAPKEE 1095
+ F ++F D Q +Q+L + LRR K ++ +L KE+
Sbjct: 337 GTYFKKQFSDPVEHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKED 396
Query: 1096 TIIEVELTNIQKKYYRAILE----------------------KNFSFLSKGAGQTNVPNL 1133
++ LT+ QK Y+ +LE +N + + G+T
Sbjct: 397 RMVYCSLTDFQKAVYQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLY 456
Query: 1134 VNTMMELRKCCNHPYLIKGAE-------------EKILGEFRDTYNPAA-SDFHLQAMIQ 1179
++ + L+K NH L++ A +++ F D + + F + +
Sbjct: 457 LSYLTVLQKVANHVALLQAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPK 516
Query: 1180 SAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQA 1239
+GK+ ++ +LL + KVL+FS + LD+L+ Y + Y R+DG + R
Sbjct: 517 YSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLK 576
Query: 1240 AIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNK 1299
+ F+ D + L+ T AGGLG+N A+ ++FD WNP NDLQA R +RIGQ +
Sbjct: 577 IVKEFNSTQ-DVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCR 635
Query: 1300 AVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGR 1337
VKV RL++ + E M+ R K L V+ S + +
Sbjct: 636 DVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAK 673
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,826,433
Number of Sequences: 37866
Number of extensions: 5566451
Number of successful extensions: 59940
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 839
Number of HSP's that attempted gapping in prelim test: 28302
Number of HSP's gapped (non-prelim): 17241
length of query: 2881
length of database: 18,247,518
effective HSP length: 120
effective length of query: 2761
effective length of database: 13,703,598
effective search space: 37835634078
effective search space used: 37835634078
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 71 (32.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.