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Search of human proteins with 94818790
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94818790 rhomboid domain containing 2 isoform a [Homo
sapiens]
(364 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94818790 rhomboid domain containing 2 isoform a [Homo sapiens] 740 0.0
gi|94818879 rhomboid domain containing 2 isoform b [Homo sapiens] 459 e-129
gi|11072101 rhomboid domain containing 3 [Homo sapiens] 61 2e-09
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 43 4e-04
gi|38373671 SEC24-related protein C [Homo sapiens] 38 0.016
gi|38373669 SEC24-related protein C [Homo sapiens] 38 0.016
gi|67089160 promyelocytic leukemia protein isoform 11 [Homo sapi... 37 0.021
gi|15451765 promyelocytic leukemia protein isoform 9 [Homo sapiens] 37 0.021
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 37 0.021
gi|33300639 rhomboid domain containing 1 [Homo sapiens] 37 0.021
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 37 0.028
gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens] 37 0.028
gi|4557853 transcription factor SOX9 [Homo sapiens] 36 0.047
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 36 0.047
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 36 0.047
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 35 0.081
gi|167736355 mucin 4 isoform a [Homo sapiens] 35 0.081
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 35 0.081
gi|4507399 transcription factor 4 isoform b [Homo sapiens] 35 0.11
gi|145312267 transcription factor 4 isoform a [Homo sapiens] 35 0.11
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 35 0.11
gi|38202209 methyl-CpG binding domain protein 5 [Homo sapiens] 35 0.11
gi|116284392 mucin 2 precursor [Homo sapiens] 35 0.14
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 35 0.14
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 35 0.14
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 35 0.14
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 35 0.14
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 35 0.14
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 35 0.14
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 35 0.14
>gi|94818790 rhomboid domain containing 2 isoform a [Homo sapiens]
Length = 364
Score = 740 bits (1910), Expect = 0.0
Identities = 364/364 (100%), Positives = 364/364 (100%)
Query: 1 MAASGPGCRSWCLCPEVPSATFFTALLSLLVSGPRLFLLQQPLAPSGLTLKSEALRNWQV 60
MAASGPGCRSWCLCPEVPSATFFTALLSLLVSGPRLFLLQQPLAPSGLTLKSEALRNWQV
Sbjct: 1 MAASGPGCRSWCLCPEVPSATFFTALLSLLVSGPRLFLLQQPLAPSGLTLKSEALRNWQV 60
Query: 61 YRLVTYIFVYENPISLLCGAIIIWRFAGNFERTVGTVRHCFFTVIFAIFSAIIFLSFEAV 120
YRLVTYIFVYENPISLLCGAIIIWRFAGNFERTVGTVRHCFFTVIFAIFSAIIFLSFEAV
Sbjct: 61 YRLVTYIFVYENPISLLCGAIIIWRFAGNFERTVGTVRHCFFTVIFAIFSAIIFLSFEAV 120
Query: 121 SSLSKLGEVEDARGFTPVAFAMLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQ 180
SSLSKLGEVEDARGFTPVAFAMLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQ
Sbjct: 121 SSLSKLGEVEDARGFTPVAFAMLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQ 180
Query: 181 TSFLSNVCGLSIGLAYGLTYCYSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERR 240
TSFLSNVCGLSIGLAYGLTYCYSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERR
Sbjct: 181 TSFLSNVCGLSIGLAYGLTYCYSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERR 240
Query: 241 AAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPA 300
AAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPA
Sbjct: 241 AAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPA 300
Query: 301 SGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSR 360
SGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSR
Sbjct: 301 SGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSR 360
Query: 361 VPMP 364
VPMP
Sbjct: 361 VPMP 364
>gi|94818879 rhomboid domain containing 2 isoform b [Homo sapiens]
Length = 223
Score = 459 bits (1180), Expect = e-129
Identities = 223/223 (100%), Positives = 223/223 (100%)
Query: 142 MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC 201
MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC
Sbjct: 1 MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC 60
Query: 202 YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP 261
YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP
Sbjct: 61 YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP 120
Query: 262 HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP 321
HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP
Sbjct: 121 HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP 180
Query: 322 ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 364
ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP
Sbjct: 181 ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 223
>gi|11072101 rhomboid domain containing 3 [Homo sapiens]
Length = 386
Score = 60.8 bits (146), Expect = 2e-09
Identities = 85/320 (26%), Positives = 134/320 (41%), Gaps = 44/320 (13%)
Query: 1 MAASGPGCRSWCLCPEVPSATFFTALLSLLVSGPRLFLLQQPLAPSGLTLKSEALRN-WQ 59
M A GP + L P +P A+ ++L LL+S L+L+ A GL L E L + WQ
Sbjct: 1 MHARGPHGQ---LSPALPLAS---SVLMLLMS--TLWLVG---AGPGLVLAPELLLDPWQ 49
Query: 60 VYRLVTYIFVYENPISLLCGAIIIWRFAGNFERTVGTVRHCFFTVIFAIFSAIIFLSFEA 119
V+RL+T+ + LL +++ E +GT+R + + A+ S ++ +
Sbjct: 50 VHRLLTHALGHTALPGLLLSLLLLPTVGWQQECHLGTLRFLHASALLALASGLLAVLLAG 109
Query: 120 VSSLSKLGEVEDARGFTPVAFAMLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLI- 178
+ S G G+ PV AML R R R +P L PWLLL + L+
Sbjct: 110 LGLSSAAGSC----GYMPVHLAMLAGEGHRPRRPRG-----ALPPWLSPWLLLALTPLLS 160
Query: 179 PQTSFLSNVCGLSIGLAYGLTYCYSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAE 238
+ FL +CGL GLAY ++ SER +++ + + ++G
Sbjct: 161 SEPPFLQLLCGLLAGLAYAAGAFRWLEPSER---------RLQVLQEGVLCRTLAGCWPL 211
Query: 239 RRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQ 298
R A L +P ++P P P + S + + A P P+L P Q
Sbjct: 212 RLLATPGSLAELPVTHPAGVRPPIPGPPYVASPDLWSHWEDSALPP-------PSLRPVQ 264
Query: 299 PA------SGLCYVQNHFGP 312
P +GL + F P
Sbjct: 265 PTWEGSSEAGLDWAGASFSP 284
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 43.1 bits (100), Expect = 4e-04
Identities = 39/127 (30%), Positives = 51/127 (40%), Gaps = 20/127 (15%)
Query: 249 PVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQN 308
P+ S S HP PS P S+ Q S + S P P P PP P G+ +QN
Sbjct: 784 PLGDSPHLPSPHPTRPPSRPPSRPQSVS--RPPSEPPLHPCPPPQAPPTLP--GIFVIQN 839
Query: 309 HFGPNPTSSSVYPASAGTSL-----------GIQPPTPVNSPGTVYSGALGTPGAAGSKE 357
G P +S+ P + G G PP P P + S A+ S+
Sbjct: 840 QLGVPPPASNPAPTAPGPPQPPLRPQSQPPEGPLPPAPHLPPSSTSSAV-----ASSSET 894
Query: 358 SSRVPMP 364
SSR+P P
Sbjct: 895 SSRLPAP 901
Score = 28.9 bits (63), Expect = 7.6
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 239 RRAAQSRKLNPVPGSYPTQSCHPHLSPSH--PVSQTQHASG-QKLASWPSCT---PGHMP 292
R ++ + ++ P P C P +P + Q+ G AS P+ T P P
Sbjct: 802 RPPSRPQSVSRPPSEPPLHPCPPPQAPPTLPGIFVIQNQLGVPPPASNPAPTAPGPPQPP 861
Query: 293 TLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTP 335
P QP G H P+ TSS+V +S+ TS + PTP
Sbjct: 862 LRPQSQPPEGPLPPAPHLPPSSTSSAV-ASSSETSSRLPAPTP 903
>gi|38373671 SEC24-related protein C [Homo sapiens]
Length = 1094
Score = 37.7 bits (86), Expect = 0.016
Identities = 42/146 (28%), Positives = 52/146 (35%), Gaps = 36/146 (24%)
Query: 249 PVPGSYPT----QSCHPHLSPSHPVSQTQHASGQK---------LASWPSCT------PG 289
PVPG T S P S + P S Q GQ + + PS T PG
Sbjct: 47 PVPGYQQTPPQGMSRAPPSSGAPPASTAQAPCGQAAYGQFGQGDVQNGPSSTVQMQRLPG 106
Query: 290 HMPTLPPYQPASGLCYVQNHFGPNPTSS-------------SVYPASAGTSLGIQPPTPV 336
P P P V +GP PTS+ +V PA + LG PPT +
Sbjct: 107 SQPFGSPLAPVGNQPPVLQPYGPPPTSAQVATQLSGMQISGAVAPAPPSSGLGFGPPTSL 166
Query: 337 NSPGTVYSGALGTPGAAGSKESSRVP 362
S SG+ G GS + P
Sbjct: 167 ASA----SGSFPNSGLYGSYPQGQAP 188
Score = 28.5 bits (62), Expect = 9.9
Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 15/99 (15%)
Query: 252 GSYPTQSCHPHLSPS--HPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNH 309
GSYP Q P LS + HP QT S AS S TP PASG + +
Sbjct: 180 GSYP-QGQAPPLSQAQGHPGIQTPQRSAPSQAS--SFTP----------PASGGPRLPSM 226
Query: 310 FGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALG 348
GP S S + P PGT +G LG
Sbjct: 227 TGPLLPGQSFGGPSVSQPNHVSSPPQALPPGTQMTGPLG 265
>gi|38373669 SEC24-related protein C [Homo sapiens]
Length = 1094
Score = 37.7 bits (86), Expect = 0.016
Identities = 42/146 (28%), Positives = 52/146 (35%), Gaps = 36/146 (24%)
Query: 249 PVPGSYPT----QSCHPHLSPSHPVSQTQHASGQK---------LASWPSCT------PG 289
PVPG T S P S + P S Q GQ + + PS T PG
Sbjct: 47 PVPGYQQTPPQGMSRAPPSSGAPPASTAQAPCGQAAYGQFGQGDVQNGPSSTVQMQRLPG 106
Query: 290 HMPTLPPYQPASGLCYVQNHFGPNPTSS-------------SVYPASAGTSLGIQPPTPV 336
P P P V +GP PTS+ +V PA + LG PPT +
Sbjct: 107 SQPFGSPLAPVGNQPPVLQPYGPPPTSAQVATQLSGMQISGAVAPAPPSSGLGFGPPTSL 166
Query: 337 NSPGTVYSGALGTPGAAGSKESSRVP 362
S SG+ G GS + P
Sbjct: 167 ASA----SGSFPNSGLYGSYPQGQAP 188
Score = 28.5 bits (62), Expect = 9.9
Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 15/99 (15%)
Query: 252 GSYPTQSCHPHLSPS--HPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNH 309
GSYP Q P LS + HP QT S AS S TP PASG + +
Sbjct: 180 GSYP-QGQAPPLSQAQGHPGIQTPQRSAPSQAS--SFTP----------PASGGPRLPSM 226
Query: 310 FGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALG 348
GP S S + P PGT +G LG
Sbjct: 227 TGPLLPGQSFGGPSVSQPNHVSSPPQALPPGTQMTGPLG 265
>gi|67089160 promyelocytic leukemia protein isoform 11 [Homo
sapiens]
Length = 781
Score = 37.4 bits (85), Expect = 0.021
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 235 SSAERRAAQSRKLNPV----PGSYPTQSCHPHLSPSH--PVSQTQHASGQKLASWPSCTP 288
SS+E A++ + P+ P S P S H SP+H PV A G AS C
Sbjct: 512 SSSEDSDAENSCMEPMETAEPQSSPAHSSPAHSSPAHSSPVQSLLRAQG---ASSLPCGT 568
Query: 289 GHMPTLPPYQPA 300
H P PP+QPA
Sbjct: 569 YHPPAWPPHQPA 580
>gi|15451765 promyelocytic leukemia protein isoform 9 [Homo sapiens]
Length = 829
Score = 37.4 bits (85), Expect = 0.021
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 235 SSAERRAAQSRKLNPV----PGSYPTQSCHPHLSPSH--PVSQTQHASGQKLASWPSCTP 288
SS+E A++ + P+ P S P S H SP+H PV A G AS C
Sbjct: 560 SSSEDSDAENSCMEPMETAEPQSSPAHSSPAHSSPAHSSPVQSLLRAQG---ASSLPCGT 616
Query: 289 GHMPTLPPYQPA 300
H P PP+QPA
Sbjct: 617 YHPPAWPPHQPA 628
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 37.4 bits (85), Expect = 0.021
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 244 SRKLNPVPGSY-PTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASG 302
S +P SY PT + SPS+ S T + S+ +P + PT P Y P S
Sbjct: 1696 SPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTS- 1752
Query: 303 LCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSP 339
N+ +P+ S P+ + TS P +P SP
Sbjct: 1753 ----PNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSP 1785
Score = 36.2 bits (82), Expect = 0.047
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 244 SRKLNPVPGSY-PTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASG 302
S +P SY PT + SPS+ S T + S+ +P + PT P Y P S
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS- 1717
Query: 303 LCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSP 339
++ +P+ S P+ + TS P +P SP
Sbjct: 1718 ----PSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP 1750
Score = 35.8 bits (81), Expect = 0.062
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 251 PGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHF 310
P PT + SPS+ S T + S+ +P + PT P Y P S ++
Sbjct: 1634 PNYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-----PSYS 1686
Query: 311 GPNPTSSSVYPASAGTSLGIQPPTPVNSP 339
+P+ S P+ + TS P +P SP
Sbjct: 1687 PTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1715
Score = 35.4 bits (80), Expect = 0.081
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 251 PGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHF 310
PG Y QS P SP+ P + S+ +P + PT P Y P S ++
Sbjct: 1605 PGGYTPQS--PSYSPTSP------SYSPTSPSYSPTSPNYSPTSPSYSPTS-----PSYS 1651
Query: 311 GPNPTSSSVYPASAGTSLGIQPPTPVNSP 339
+P+ S P+ + TS P +P SP
Sbjct: 1652 PTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1680
Score = 35.0 bits (79), Expect = 0.11
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 12/122 (9%)
Query: 244 SRKLNPVPGSYPTQS-----CHPHLSPSHP-VSQTQHASGQKLASWPSCTPGHMPTLPPY 297
S K P SY S P SP+ P S T ++ TP + PT P Y
Sbjct: 1836 SPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTY 1895
Query: 298 QPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKE 357
P S + + +P S P + TS P +P SP T G+ +P + G
Sbjct: 1896 SPTSPV-----YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP-TSPKGSTYSPTSPGYSP 1949
Query: 358 SS 359
+S
Sbjct: 1950 TS 1951
Score = 32.3 bits (72), Expect = 0.68
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 287 TPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYPAS---AGTSLGIQPPTPVNSP 339
+P + PT P Y+P S Y +PTS S P S + TS P +P SP
Sbjct: 1590 SPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSP 1645
Score = 32.0 bits (71), Expect = 0.89
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 244 SRKLNPVPGSY-PTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASG 302
S P SY PT + SP++ + ++ S+ +P + PT P Y P+S
Sbjct: 1752 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSP--SYSPTSPSYSPTSPSYSPSSP 1809
Query: 303 LCYVQN--HFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGT 341
Q+ + +P+ S P+ + TS P +P SP +
Sbjct: 1810 RYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSS 1850
Score = 28.9 bits (63), Expect = 7.6
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 251 PGSYPTQSCHPHLSPSH-PVSQTQHASGQKLASWPSCTPGHMPTLPPYQPAS 301
P PT + SP + P S T + K +++ +PG+ PT P Y S
Sbjct: 1907 PKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTS 1958
>gi|33300639 rhomboid domain containing 1 [Homo sapiens]
Length = 315
Score = 37.4 bits (85), Expect = 0.021
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 9/163 (5%)
Query: 40 QQPLAPSGLTL-KSEALRNWQVYRLVTYIFVYENPISLLCG-AIIIWRFAGNFERTVGTV 97
Q+PL S L++ K ++WQ RL+ + + L A ++W+ N ER +G+
Sbjct: 46 QKPLYSSCLSVEKCYQQKDWQ--RLLLSPLHHADDWHLYFNMASMLWKGI-NLERRLGSR 102
Query: 98 RHCFFTVIFAIFSAIIFLSFE-AVSSLSKLGEVED--ARGFTPVAFAMLGVTTVRSRMRR 154
+ F++ + +++L + AV+ + + A GF+ V FA+ +
Sbjct: 103 WFAYVITAFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGF 162
Query: 155 ALVFGMVVPSVLVPWLLLGASWLI-PQTSFLSNVCGLSIGLAY 196
+ G VP+ W+ L A L P TSF ++ G+ +GL Y
Sbjct: 163 VNILGFPVPNRFACWVELVAIHLFSPGTSFAGHLAGILVGLMY 205
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 37.0 bits (84), Expect = 0.028
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Query: 251 PGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHF 310
PG +QS P LS P Q Q PS PG + P +SG + F
Sbjct: 381 PGVQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSSGPAPSPSSF 440
Query: 311 GPNPT---SSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSR 360
P+P+ S S A + + P P+N+P V ++ +P + E +
Sbjct: 441 LPSPSPQPSQSPVTARTPQNFSVPSPGPLNTP--VNPSSVMSPAGSSQAEEQQ 491
>gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens]
Length = 1205
Score = 37.0 bits (84), Expect = 0.028
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 42/163 (25%)
Query: 229 FKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHPHL----SPSHPVSQTQHASGQKLASWP 284
+ + +G SA R Q P + PT + +P+ S S Q+Q + Q AS P
Sbjct: 883 YPFGTGGSAMYRPQQ-------PVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSP 935
Query: 285 SCTPGHMPTLPPYQPASGLCYVQNHFGPN-PTSSSVYPASAGTS---------------- 327
+ +P T P P+SG + H GP P SSS Y GT+
Sbjct: 936 TSSPA---TSFPPPPSSGASF--QHGGPGAPPSSSAYALPPGTTGPQNGWNDPPALNRVP 990
Query: 328 ------LGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 364
PP P+ SP LG P + ++ P+P
Sbjct: 991 KKKKMPENFMPPVPITSP---IMNPLGDPQSQMLQQQPSAPVP 1030
>gi|4557853 transcription factor SOX9 [Homo sapiens]
Length = 509
Score = 36.2 bits (82), Expect = 0.047
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 253 SYPTQSCHPH-----LSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQ 307
S P QS H LSPSH Q QH S Q++A P P + P+ PP + Q
Sbjct: 387 SEPGQSQRTHIKTEQLSPSHYSEQQQH-SPQQIAYSPFNLPHYSPSYPP------ITRSQ 439
Query: 308 NHFGPNPTSSSVYPASAGTSLGI 330
+ + SSS Y +AG G+
Sbjct: 440 YDYTDHQNSSSYYSHAAGQGTGL 462
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 36.2 bits (82), Expect = 0.047
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 36/135 (26%)
Query: 252 GSYPTQSCH-PHLSPSHPVSQTQHASGQKLASWPSCT----------PGHMPTLPPYQPA 300
G +P S H ++P+ P + T A+ + + PS T P ++P+LP P
Sbjct: 628 GPFPVVSVHNTTINPTSPTTATM-ANANRGPTSPSVTAIELIPSVTNPENLPSLPDIPPI 686
Query: 301 ----SGLCYVQN---------HFGPNPTS--------SSVYPASAGTSLGIQPPTPVNSP 339
+G + N H P PTS S++ P S+G S TPV P
Sbjct: 687 QLEDAGSSSLDNLLSRYISGSHLPPQPTSTMNPSPGPSALSPGSSGLS---NSHTPVRPP 743
Query: 340 GTVYSGALGTPGAAG 354
T +G+ G+ G++G
Sbjct: 744 STSSTGSRGSCGSSG 758
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 36.2 bits (82), Expect = 0.047
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 36/135 (26%)
Query: 252 GSYPTQSCH-PHLSPSHPVSQTQHASGQKLASWPSCT----------PGHMPTLPPYQPA 300
G +P S H ++P+ P + T A+ + + PS T P ++P+LP P
Sbjct: 628 GPFPVVSVHNTTINPTSPTTATM-ANANRGPTSPSVTAIELIPSVTNPENLPSLPDIPPI 686
Query: 301 ----SGLCYVQN---------HFGPNPTS--------SSVYPASAGTSLGIQPPTPVNSP 339
+G + N H P PTS S++ P S+G S TPV P
Sbjct: 687 QLEDAGSSSLDNLLSRYISGSHLPPQPTSTMNPSPGPSALSPGSSGLS---NSHTPVRPP 743
Query: 340 GTVYSGALGTPGAAG 354
T +G+ G+ G++G
Sbjct: 744 STSSTGSRGSCGSSG 758
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 35.4 bits (80), Expect = 0.081
Identities = 40/152 (26%), Positives = 56/152 (36%), Gaps = 33/152 (21%)
Query: 231 YVSGSSAERRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASW------- 283
++S SSA A+ L+P P S P+ PVS A G++L+ W
Sbjct: 77 WISTSSAGTGGAEPPALSPAPAS-----------PARPVSP---APGRRLSLWAVPPGPP 122
Query: 284 ------PSCTPGHMPTLPPY----QPASGLCYVQNHFGPN-PTSSSVYPASAGTSLGIQP 332
P PG PT P+ G + G P SSS +P + L + P
Sbjct: 123 LSGGLSPDPKPGGAPTSSRRPLLSSPSWGGPEPEGRAGGGIPGSSSPHPGTGSRRLKVAP 182
Query: 333 PTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 364
P P P + + G G SR+ P
Sbjct: 183 PPPAPKPCKTVTTS-GAKAGGGKGAGSRLSWP 213
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 35.4 bits (80), Expect = 0.081
Identities = 35/136 (25%), Positives = 51/136 (37%), Gaps = 9/136 (6%)
Query: 233 SGSSAERRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVS----QTQHASGQKLASWPSCTP 288
SGS A P+P +Y + + H +P H T HA+ + S S +
Sbjct: 960 SGSGKTFTTALISNATPLPVTYASSASTGHTTPLHVTDASSVSTGHATPLPVTSPSSVST 1019
Query: 289 GHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALG 348
GH LP +S H P P +S AS G S + P T +S T + L
Sbjct: 1020 GHTTPLPVTDTSS---ESTGHVTPLPV-TSFSSASTGDSTPL-PVTDTSSASTGHVTPLP 1074
Query: 349 TPGAAGSKESSRVPMP 364
+ + P+P
Sbjct: 1075 VTSLSSASTGDTTPLP 1090
Score = 33.1 bits (74), Expect = 0.40
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 15/123 (12%)
Query: 249 PVPGSYPTQSCHPHLSP----SHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLC 304
P+P + P+ + H +P S + T HA+ + S S + GH LP +S
Sbjct: 3280 PLPVTSPSSASTGHATPLPVTSTSSASTGHATPVPVTSTSSASTGHTTPLPVTDTSSA-- 3337
Query: 305 YVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSG---ALGTPGAAGSKESSRV 361
P P +S P+SA T G P V P + +G L GA+ +
Sbjct: 3338 -STGDTTPLPVTS---PSSAST--GHTTPLHVTIPSSASTGDTSTLPVTGASSASTGHAT 3391
Query: 362 PMP 364
P+P
Sbjct: 3392 PLP 3394
Score = 31.2 bits (69), Expect = 1.5
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 272 TQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQ 331
T HA+ + S S + GH LP P+S H P P +S ++ S G
Sbjct: 3867 TGHATPLPVTSTSSVSTGHATPLPVTSPSSA---STGHATPVPVTS-----TSSASTGDT 3918
Query: 332 PPTPVNSPGTVYSG-----ALGTPGAAGSKESSRVPM 363
P PV + ++ +G + +P +A ++S +P+
Sbjct: 3919 TPLPVTNASSLSTGHATPLHVTSPSSASRGDTSTLPV 3955
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 35.4 bits (80), Expect = 0.081
Identities = 36/130 (27%), Positives = 43/130 (33%), Gaps = 23/130 (17%)
Query: 249 PVPGSYPTQSCHPHLSPSHPVSQTQH--------ASGQKLASWPSCTPG------HMPTL 294
P P P Q PH P HP Q +S +A P PG +
Sbjct: 72 PPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSA 131
Query: 295 PPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAG 354
PP P + + GP PT PA G PPTP + SG TP AG
Sbjct: 132 PPATPPTSGAPPGSGPGPTPTPP---PAVTSAPPGAPPPTPPS------SGVPTTPPQAG 182
Query: 355 SKESSRVPMP 364
+P
Sbjct: 183 GPPPPPAAVP 192
>gi|4507399 transcription factor 4 isoform b [Homo sapiens]
Length = 667
Score = 35.0 bits (79), Expect = 0.11
Identities = 43/152 (28%), Positives = 53/152 (34%), Gaps = 35/152 (23%)
Query: 233 SGSSAERRAAQSRKLNPVPGSYPTQSCHPH--LS-PSH---------PVSQTQHASGQKL 280
SG + A + +P S S HPH LS PSH P T H SG
Sbjct: 231 SGMNQPGYAGMLGNSSHIPQSSSYCSLHPHERLSYPSHSSADINSSLPPMSTFHRSGTNH 290
Query: 281 ASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSS------------SVY-PASAGTS 327
S SCTP PA+G + + G S S+Y P S
Sbjct: 291 YSTSSCTP----------PANGTDSIMANRGSGAAGSSQTGDALGKALASIYSPDHTNNS 340
Query: 328 LGIQPPTPVNSPGTVYSGALGTPGAAGSKESS 359
P TPV SP ++ +G G SS
Sbjct: 341 FSSNPSTPVGSPPSLSAGTAVWSRNGGQASSS 372
>gi|145312267 transcription factor 4 isoform a [Homo sapiens]
Length = 671
Score = 35.0 bits (79), Expect = 0.11
Identities = 43/152 (28%), Positives = 53/152 (34%), Gaps = 35/152 (23%)
Query: 233 SGSSAERRAAQSRKLNPVPGSYPTQSCHPH--LS-PSH---------PVSQTQHASGQKL 280
SG + A + +P S S HPH LS PSH P T H SG
Sbjct: 231 SGMNQPGYAGMLGNSSHIPQSSSYCSLHPHERLSYPSHSSADINSSLPPMSTFHRSGTNH 290
Query: 281 ASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSS------------SVY-PASAGTS 327
S SCTP PA+G + + G S S+Y P S
Sbjct: 291 YSTSSCTP----------PANGTDSIMANRGSGAAGSSQTGDALGKALASIYSPDHTNNS 340
Query: 328 LGIQPPTPVNSPGTVYSGALGTPGAAGSKESS 359
P TPV SP ++ +G G SS
Sbjct: 341 FSSNPSTPVGSPPSLSAGTAVWSRNGGQASSS 372
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 35.0 bits (79), Expect = 0.11
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 5/122 (4%)
Query: 242 AQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPAS 301
+ S L P + +QS P LS P Q Q PS PG + P +S
Sbjct: 412 SSSIPLGRQPMAQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSS 471
Query: 302 GLCYVQNHFGPNPT---SSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKES 358
G + F P+P+ S S A + + P P+N+P V ++ +P + E
Sbjct: 472 GPAPSPSSFLPSPSPQPSQSPVTARTPQNFSVPSPGPLNTP--VNPSSVMSPAGSSQAEE 529
Query: 359 SR 360
+
Sbjct: 530 QQ 531
>gi|38202209 methyl-CpG binding domain protein 5 [Homo sapiens]
Length = 1494
Score = 35.0 bits (79), Expect = 0.11
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 249 PVPGSYPTQSCHP-HLSPSHPVSQTQHASGQKLASWPSCTPGHM--------PTLPPYQP 299
P+P + P + P H++ V + QH++ L+ P +P HM P
Sbjct: 402 PLPSNLPLPTVKPGHMNHGSHVQRVQHSASTSLSPSPVTSPVHMMGTGIGRIEASPQRSR 461
Query: 300 ASGLCYVQNHF-----GPNPTSS--SVYPASAGTSLGIQPPTPVNSPGTVYSG 345
+S +F GP TSS V P S +++G P+ +SP T G
Sbjct: 462 SSSTSSDHGNFMMPPVGPQATSSGIKVPPRSPRSTIGSPRPSMPSSPSTKSDG 514
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 34.7 bits (78), Expect = 0.14
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 249 PVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQN 308
P P T + P +PS P+S T S P+ TP PT P P +
Sbjct: 1438 PSPPITTTTTPPPTTTPSPPISTTTTPPPTTTPSPPTTTPS-PPTTTPSPPTTTTTTPPP 1496
Query: 309 HFGPN-PTSSSVYPASAGTSLGIQPPTPVNSPGT 341
P+ PT++ + P ++ T+L PPT SP T
Sbjct: 1497 TTTPSPPTTTPITPPASTTTL---PPTTTPSPPT 1527
Score = 29.3 bits (64), Expect = 5.8
Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 18/120 (15%)
Query: 249 PVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMP----TLPPYQPASGLC 304
P P + T + P +PS P + T S P+ TP P TLPP S
Sbjct: 1586 PSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPS--- 1642
Query: 305 YVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 364
P PT+++ P + S PPT + + P S + P P
Sbjct: 1643 -------PPPTTTTTPPPTTTPS----PPTTTTPSPPITTTTTPPPTTTPSSPITTTPSP 1691
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 34.7 bits (78), Expect = 0.14
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
Query: 234 GSSAERRAAQSRKLNPVPGSYPTQ--SCHPHLSPSHPVSQTQHA-----------SGQKL 280
GS + +A+Q RKL P S P P HP+S +H S L
Sbjct: 1563 GSLSSSKASQDRKLTSTPREIAKSPHSTVPEHHP-HPISPYEHLLRGVSGVDLYRSHIPL 1621
Query: 281 ASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP 321
A P+ P +P A+ Y+ H PNPT +YP
Sbjct: 1622 AFDPTSIPRGIPL-----DAAAAYYLPRHLAPNPTYPHLYP 1657
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 34.7 bits (78), Expect = 0.14
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
Query: 234 GSSAERRAAQSRKLNPVPGSYPTQ--SCHPHLSPSHPVSQTQHA-----------SGQKL 280
GS + +A+Q RKL P S P P HP+S +H S L
Sbjct: 1579 GSLSSSKASQDRKLTSTPREIAKSPHSTVPEHHP-HPISPYEHLLRGVSGVDLYRSHIPL 1637
Query: 281 ASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP 321
A P+ P +P A+ Y+ H PNPT +YP
Sbjct: 1638 AFDPTSIPRGIPL-----DAAAAYYLPRHLAPNPTYPHLYP 1673
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 34.7 bits (78), Expect = 0.14
Identities = 38/130 (29%), Positives = 49/130 (37%), Gaps = 21/130 (16%)
Query: 251 PGS---YPTQSCHPHLSPSHPVSQTQHASGQKLASW-----PSCTPGHMPTL------PP 296
PGS PT P + PS P QT S +L PS P P L PP
Sbjct: 728 PGSGFPAPTVESTPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPP 787
Query: 297 YQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTV-------YSGALGT 349
P L + P+P S + A+A + L I PT SP + + + G
Sbjct: 788 LLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGP 847
Query: 350 PGAAGSKESS 359
P + S SS
Sbjct: 848 PTLSSSSSSS 857
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 34.7 bits (78), Expect = 0.14
Identities = 38/130 (29%), Positives = 49/130 (37%), Gaps = 21/130 (16%)
Query: 251 PGS---YPTQSCHPHLSPSHPVSQTQHASGQKLASW-----PSCTPGHMPTL------PP 296
PGS PT P + PS P QT S +L PS P P L PP
Sbjct: 929 PGSGFPAPTVESTPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPP 988
Query: 297 YQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTV-------YSGALGT 349
P L + P+P S + A+A + L I PT SP + + + G
Sbjct: 989 LLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGP 1048
Query: 350 PGAAGSKESS 359
P + S SS
Sbjct: 1049 PTLSSSSSSS 1058
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 34.7 bits (78), Expect = 0.14
Identities = 38/130 (29%), Positives = 49/130 (37%), Gaps = 21/130 (16%)
Query: 251 PGS---YPTQSCHPHLSPSHPVSQTQHASGQKLASW-----PSCTPGHMPTL------PP 296
PGS PT P + PS P QT S +L PS P P L PP
Sbjct: 929 PGSGFPAPTVESTPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPP 988
Query: 297 YQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTV-------YSGALGT 349
P L + P+P S + A+A + L I PT SP + + + G
Sbjct: 989 LLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGP 1048
Query: 350 PGAAGSKESS 359
P + S SS
Sbjct: 1049 PTLSSSSSSS 1058
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 34.7 bits (78), Expect = 0.14
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 11/109 (10%)
Query: 260 HPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQ--------NHFG 311
HP +P+ S+ + GQK P+ PG PP + AS +H G
Sbjct: 196 HPARAPARGDSEDRRGPGQKTGPDPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSG 255
Query: 312 PNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSR 360
SS PA + +Q P +PG+V S A PG G+ SR
Sbjct: 256 -GAGDSSRSPAGLRRANSVQASRP--APGSVQSPAPPQPGQPGTPGGSR 301
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 34.7 bits (78), Expect = 0.14
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 11/109 (10%)
Query: 260 HPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQ--------NHFG 311
HP +P+ S+ + GQK P+ PG PP + AS +H G
Sbjct: 192 HPARAPARGDSEDRRGPGQKTGPDPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSG 251
Query: 312 PNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSR 360
SS PA + +Q P +PG+V S A PG G+ SR
Sbjct: 252 -GAGDSSRSPAGLRRANSVQASRP--APGSVQSPAPPQPGQPGTPGGSR 297
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,536,725
Number of Sequences: 37866
Number of extensions: 784270
Number of successful extensions: 3700
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 199
Number of HSP's that attempted gapping in prelim test: 3406
Number of HSP's gapped (non-prelim): 466
length of query: 364
length of database: 18,247,518
effective HSP length: 104
effective length of query: 260
effective length of database: 14,309,454
effective search space: 3720458040
effective search space used: 3720458040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.