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Search of human proteins with 94536832
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94536832 PAP associated domain containing 5 isoform b [Homo
sapiens]
(442 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94536832 PAP associated domain containing 5 isoform b [Homo s... 890 0.0
gi|94536834 PAP associated domain containing 5 isoform a [Homo s... 868 0.0
gi|5902142 DNA polymerase sigma [Homo sapiens] 483 e-136
gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens] 62 1e-09
gi|167555099 PAP associated domain containing 4 [Homo sapiens] 59 1e-08
gi|167555097 PAP associated domain containing 4 [Homo sapiens] 59 1e-08
gi|167555095 PAP associated domain containing 4 [Homo sapiens] 59 1e-08
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho... 48 2e-05
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho... 48 2e-05
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho... 48 2e-05
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 35 0.10
gi|38372901 Sp1 transcription factor isoform a [Homo sapiens] 35 0.18
gi|218751903 Sp1 transcription factor isoform b [Homo sapiens] 35 0.18
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 35 0.18
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 35 0.18
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 33 0.40
gi|39777614 SS18-like protein 1 [Homo sapiens] 33 0.40
gi|122114658 hypothetical protein LOC23053 [Homo sapiens] 33 0.52
gi|42518068 trans-golgi network protein 2 [Homo sapiens] 33 0.52
gi|21450808 PARK2 co-regulated-like isoform 1 [Homo sapiens] 33 0.52
gi|161016767 mucin 21 [Homo sapiens] 33 0.52
gi|151301228 formin binding protein 3 [Homo sapiens] 33 0.52
gi|50083281 KIAA1853 protein [Homo sapiens] 33 0.68
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.68
gi|91982772 mucin 17 [Homo sapiens] 32 0.88
gi|25777645 small conductance calcium-activated potassium channe... 32 0.88
gi|226817313 SH3 and multiple ankyrin repeat domains 2 isoform 1... 32 1.2
gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens] 32 1.2
gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens] 32 1.2
gi|50962882 G patch domain containing 8 [Homo sapiens] 32 1.2
>gi|94536832 PAP associated domain containing 5 isoform b [Homo
sapiens]
Length = 442
Score = 890 bits (2300), Expect = 0.0
Identities = 442/442 (100%), Positives = 442/442 (100%)
Query: 1 MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP 60
MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP
Sbjct: 1 MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP 60
Query: 61 LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDF 120
LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDF
Sbjct: 61 LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDF 120
Query: 121 TKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYG 180
TKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYG
Sbjct: 121 TKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYG 180
Query: 181 VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDV 240
VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDV
Sbjct: 181 VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDV 240
Query: 241 GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISK 300
GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISK
Sbjct: 241 GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISK 300
Query: 301 QWGLKNRPEPSCNGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLE 360
QWGLKNRPEPSCNGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLE
Sbjct: 301 QWGLKNRPEPSCNGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLE 360
Query: 361 SSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSN 420
SSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSN
Sbjct: 361 SSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSN 420
Query: 421 NQYYHGKKRKHKRDAPLSDLCR 442
NQYYHGKKRKHKRDAPLSDLCR
Sbjct: 421 NQYYHGKKRKHKRDAPLSDLCR 442
>gi|94536834 PAP associated domain containing 5 isoform a [Homo
sapiens]
Length = 489
Score = 868 bits (2242), Expect = 0.0
Identities = 442/489 (90%), Positives = 442/489 (90%), Gaps = 47/489 (9%)
Query: 1 MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP 60
MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP
Sbjct: 1 MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP 60
Query: 61 LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDF 120
LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDF
Sbjct: 61 LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDF 120
Query: 121 TKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYG 180
TKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYG
Sbjct: 121 TKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYG 180
Query: 181 VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDV 240
VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDV
Sbjct: 181 VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDV 240
Query: 241 GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISK 300
GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISK
Sbjct: 241 GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISK 300
Query: 301 QWGLKNRPEPSCN----------------------------------------------- 313
QWGLKNRPEPSCN
Sbjct: 301 QWGLKNRPEPSCNGNGVTLIVDTQQLDKCNNNLSEENEALGKCRSKTSESLSKHSSNSSS 360
Query: 314 GPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQT 373
GPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQT
Sbjct: 361 GPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQT 420
Query: 374 TNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQYYHGKKRKHKR 433
TNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQYYHGKKRKHKR
Sbjct: 421 TNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQYYHGKKRKHKR 480
Query: 434 DAPLSDLCR 442
DAPLSDLCR
Sbjct: 481 DAPLSDLCR 489
>gi|5902142 DNA polymerase sigma [Homo sapiens]
Length = 542
Score = 483 bits (1242), Expect = e-136
Identities = 249/380 (65%), Positives = 283/380 (74%), Gaps = 41/380 (10%)
Query: 1 MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP 60
MSP PEE MR EVV RIE+V+K+LWP+ADVQIFGSF TGLYLPTSDIDLVVFGKWE P
Sbjct: 1 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP 60
Query: 61 LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDF 120
L LE+ALRKH VA+ S+KVLDKATVPIIKLTD TEVKVDISFN++ GVRAA+ IK++
Sbjct: 61 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY 120
Query: 121 TKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYG 180
KKY +LPYL+LVLKQFLLQRDLNEVFTGGI SYSL LMA+SFLQLHPR DA + N G
Sbjct: 121 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG 180
Query: 181 VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDV 240
+LL+EFFELYGR+FNYLKTGIRIK+GG+Y+AK+E+ K M GYRPSML IEDPL PGNDV
Sbjct: 181 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV 240
Query: 241 GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISK 300
GRSSYGAMQVKQ FDYAY+VLSHAVSP+A+ YPN + ES LGRII+VT EV YR WI +
Sbjct: 241 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE 300
Query: 301 QWGLKNRPEP-------------SCNGP----------------------------VSSS 319
+WG K P P +CNG S+S
Sbjct: 301 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS 360
Query: 320 SATQSSSSDVDSDATPCKTP 339
S + S SDVDSD PC TP
Sbjct: 361 SVSSLSGSDVDSDTPPCTTP 380
>gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]
Length = 1495
Score = 61.6 bits (148), Expect = 1e-09
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 10/172 (5%)
Query: 2 SPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVV----FGKWE 57
SP E++ R + +ES I++ +P + +FGS K G SD+D+ + E
Sbjct: 1013 SPTIIEDQAREHIRQNLESFIRQDFPGTKLSLFGSSKNGFGFKQSDLDVCMTINGLETAE 1072
Query: 58 NLP-LWTLEE---ALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRA 113
L + T+EE LRKH + ++ + A VPI+K + ++VDIS +
Sbjct: 1073 GLDCVRTIEELARVLRKH--SGLRNILPITTAKVPIVKFFHLRSGLEVDISLYNTLALHN 1130
Query: 114 ADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQ 165
L+ ++ P + YL +K F D+ + G + SY+ LM + FLQ
Sbjct: 1131 TRLLSAYSAIDPRVKYLCYTMKVFTKMCDIGDASRGSLSSYAYTLMVLYFLQ 1182
Score = 39.7 bits (91), Expect = 0.006
Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 13/176 (7%)
Query: 6 EEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDL-VVFGKWENLP--LW 62
E + R+E+ +E+V + P ++++GS + L SD+++ + F + P L
Sbjct: 311 ENLEQRLEIKRIMENVFQHKLPDCSLRLYGSSCSRLGFKNSDVNIDIQFPAIMSQPDVLL 370
Query: 63 TLEEALRKHKVADEDSVKVLDK---ATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKD 119
++E L+ + DS +D A VP++ + + + +S +N +
Sbjct: 371 LVQECLK-----NSDSFIDVDADFHARVPVVVCREKQSGLLCKVSAGNENACLTTKHLTA 425
Query: 120 FTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIP 175
K P L LV+ + + ++ GG+ Y LMA+ FLQ R++ +P
Sbjct: 426 LGKLEPKLVPLVIAFRYWAKLCSIDRPEEGGLPPYVFALMAIFFLQ--QRKEPLLP 479
>gi|167555099 PAP associated domain containing 4 [Homo sapiens]
Length = 484
Score = 58.5 bits (140), Expect = 1e-08
Identities = 62/281 (22%), Positives = 117/281 (41%), Gaps = 53/281 (18%)
Query: 17 RIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKH----- 71
+++ I+ L+P + + + GS G +SD DL + K E ++ +H
Sbjct: 183 QLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLV 242
Query: 72 ------KVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYP 125
+++ L +A VPI+K D + V+ D++ N G+R L++ +
Sbjct: 243 HKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLEN 302
Query: 126 VLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHP----------------- 168
+ LVLV+K++ +N+ G + SYSL LM + +LQ P
Sbjct: 303 RVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP 362
Query: 169 -------REDAC-IP------NTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDE 214
+ C +P +N G LL+ F + Y F++ I +++ + D
Sbjct: 363 AIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDG 422
Query: 215 VQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFD 255
++ +R + +E+P G ++ A+ KQ FD
Sbjct: 423 IE------WRNKYICVEEPFD-----GTNTARAVHEKQKFD 452
>gi|167555097 PAP associated domain containing 4 [Homo sapiens]
Length = 484
Score = 58.5 bits (140), Expect = 1e-08
Identities = 62/281 (22%), Positives = 117/281 (41%), Gaps = 53/281 (18%)
Query: 17 RIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKH----- 71
+++ I+ L+P + + + GS G +SD DL + K E ++ +H
Sbjct: 183 QLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLV 242
Query: 72 ------KVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYP 125
+++ L +A VPI+K D + V+ D++ N G+R L++ +
Sbjct: 243 HKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLEN 302
Query: 126 VLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHP----------------- 168
+ LVLV+K++ +N+ G + SYSL LM + +LQ P
Sbjct: 303 RVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP 362
Query: 169 -------REDAC-IP------NTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDE 214
+ C +P +N G LL+ F + Y F++ I +++ + D
Sbjct: 363 AIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDG 422
Query: 215 VQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFD 255
++ +R + +E+P G ++ A+ KQ FD
Sbjct: 423 IE------WRNKYICVEEPFD-----GTNTARAVHEKQKFD 452
>gi|167555095 PAP associated domain containing 4 [Homo sapiens]
Length = 484
Score = 58.5 bits (140), Expect = 1e-08
Identities = 62/281 (22%), Positives = 117/281 (41%), Gaps = 53/281 (18%)
Query: 17 RIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKH----- 71
+++ I+ L+P + + + GS G +SD DL + K E ++ +H
Sbjct: 183 QLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLV 242
Query: 72 ------KVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYP 125
+++ L +A VPI+K D + V+ D++ N G+R L++ +
Sbjct: 243 HKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLEN 302
Query: 126 VLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHP----------------- 168
+ LVLV+K++ +N+ G + SYSL LM + +LQ P
Sbjct: 303 RVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP 362
Query: 169 -------REDAC-IP------NTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDE 214
+ C +P +N G LL+ F + Y F++ I +++ + D
Sbjct: 363 AIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDG 422
Query: 215 VQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFD 255
++ +R + +E+P G ++ A+ KQ FD
Sbjct: 423 IE------WRNKYICVEEPFD-----GTNTARAVHEKQKFD 452
>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
sapiens]
Length = 1645
Score = 47.8 bits (112), Expect = 2e-05
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 1 MSPRPEEEKMRMEVVNRIESVI-KELWPSADVQIFGSFKTGLYLPTSDIDL-VVFGKWEN 58
+SP E+ R +++ +E I KE A + +FGS K G SD+D+ + EN
Sbjct: 962 LSPPCSEQHNREQILIGLEKFIQKEYDEKARLCLFGSSKNGFGFRDSDLDICMTLEGHEN 1021
Query: 59 LP-------LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGV 111
+ L + L++H ++ + A VPI+K + ++ DIS
Sbjct: 1022 AEKLNCKEIIENLAKILKRHPGLR--NILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQ 1079
Query: 112 RAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQ 165
++ + P + YL +K F + D+ + G + SY+ LM + FLQ
Sbjct: 1080 HNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYILMVLYFLQ 1133
Score = 45.1 bits (105), Expect = 1e-04
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 3/162 (1%)
Query: 6 EEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDL-VVFGKWENLPLWTL 64
++ ++R E+V + VI P ++++GS T L +SD+++ + F N P +
Sbjct: 371 DDLRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVNIDIKFPPKMNHPDLLI 430
Query: 65 EE-ALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKK 123
+ + K V D V+ A VP++ D + + +S DL+ K
Sbjct: 431 KVLGILKKNVLYVD-VESDFHAKVPVVVCRDRKSGLLCRVSAGNDMACLTTDLLTALGKI 489
Query: 124 YPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQ 165
PV LVL + + ++ GGI SY LM + FLQ
Sbjct: 490 EPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQ 531
>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
sapiens]
Length = 1644
Score = 47.8 bits (112), Expect = 2e-05
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 1 MSPRPEEEKMRMEVVNRIESVI-KELWPSADVQIFGSFKTGLYLPTSDIDL-VVFGKWEN 58
+SP E+ R +++ +E I KE A + +FGS K G SD+D+ + EN
Sbjct: 962 LSPPCSEQHNREQILIGLEKFIQKEYDEKARLCLFGSSKNGFGFRDSDLDICMTLEGHEN 1021
Query: 59 LP-------LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGV 111
+ L + L++H ++ + A VPI+K + ++ DIS
Sbjct: 1022 AEKLNCKEIIENLAKILKRHPGLR--NILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQ 1079
Query: 112 RAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQ 165
++ + P + YL +K F + D+ + G + SY+ LM + FLQ
Sbjct: 1080 HNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYILMVLYFLQ 1133
Score = 45.1 bits (105), Expect = 1e-04
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 3/162 (1%)
Query: 6 EEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDL-VVFGKWENLPLWTL 64
++ ++R E+V + VI P ++++GS T L +SD+++ + F N P +
Sbjct: 371 DDLRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVNIDIKFPPKMNHPDLLI 430
Query: 65 EE-ALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKK 123
+ + K V D V+ A VP++ D + + +S DL+ K
Sbjct: 431 KVLGILKKNVLYVD-VESDFHAKVPVVVCRDRKSGLLCRVSAGNDMACLTTDLLTALGKI 489
Query: 124 YPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQ 165
PV LVL + + ++ GGI SY LM + FLQ
Sbjct: 490 EPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQ 531
>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
sapiens]
Length = 1640
Score = 47.8 bits (112), Expect = 2e-05
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 1 MSPRPEEEKMRMEVVNRIESVI-KELWPSADVQIFGSFKTGLYLPTSDIDL-VVFGKWEN 58
+SP E+ R +++ +E I KE A + +FGS K G SD+D+ + EN
Sbjct: 962 LSPPCSEQHNREQILIGLEKFIQKEYDEKARLCLFGSSKNGFGFRDSDLDICMTLEGHEN 1021
Query: 59 LP-------LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGV 111
+ L + L++H ++ + A VPI+K + ++ DIS
Sbjct: 1022 AEKLNCKEIIENLAKILKRHPGLR--NILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQ 1079
Query: 112 RAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQ 165
++ + P + YL +K F + D+ + G + SY+ LM + FLQ
Sbjct: 1080 HNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYILMVLYFLQ 1133
Score = 45.1 bits (105), Expect = 1e-04
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 3/162 (1%)
Query: 6 EEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDL-VVFGKWENLPLWTL 64
++ ++R E+V + VI P ++++GS T L +SD+++ + F N P +
Sbjct: 371 DDLRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVNIDIKFPPKMNHPDLLI 430
Query: 65 EE-ALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKK 123
+ + K V D V+ A VP++ D + + +S DL+ K
Sbjct: 431 KVLGILKKNVLYVD-VESDFHAKVPVVVCRDRKSGLLCRVSAGNDMACLTTDLLTALGKI 489
Query: 124 YPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQ 165
PV LVL + + ++ GGI SY LM + FLQ
Sbjct: 490 EPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQ 531
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 35.4 bits (80), Expect = 0.10
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 299 SKQWGLKNRPEPSCNGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVS 358
++Q G + S + SSSS++ SSSS +++ ++ G G ++ S
Sbjct: 2549 AEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEG-----EEEGDKNGDGGCGTGGRNCS 2603
Query: 359 LESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGK 418
SS+A S+ ++++S+S++ S S+ SSS ++ +S S ++
Sbjct: 2604 AASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2663
Query: 419 SNN 421
S++
Sbjct: 2664 SSS 2666
Score = 30.0 bits (66), Expect = 4.4
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 315 PVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTT 374
P SSSS++ SSSS S ++ + S+ + S S SS + S+ ++
Sbjct: 2612 PASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2671
Query: 375 NTSNSTNKSQHGSA 388
T ++ S A
Sbjct: 2672 TTDEDSSCSSDDEA 2685
Score = 28.9 bits (63), Expect = 9.8
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 317 SSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNT 376
SSSS++ SSSS S ++ + S+ + S S SS + S+ TT+
Sbjct: 2616 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDE 2675
Query: 377 SNSTNKSQHGS 387
+S + +
Sbjct: 2676 DSSCSSDDEAA 2686
>gi|38372901 Sp1 transcription factor isoform a [Homo sapiens]
Length = 785
Score = 34.7 bits (78), Expect = 0.18
Identities = 37/126 (29%), Positives = 48/126 (38%), Gaps = 32/126 (25%)
Query: 317 SSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNT 376
SS + T SSS +S + P ++G + S SL SSQA T +
Sbjct: 280 SSQAVTISSSGSQESGSQPV----------TSGTTISS--ASLVSSQASSSSFFTNANSY 327
Query: 377 SNSTNKSQHGSARLFRSSSKGF--QGTT------------------QTSHGSLMTNKQHQ 416
S +T S G S S G QG T QTS GSL +Q +
Sbjct: 328 STTTTTSNMGIMNFTTSGSSGTNSQGQTPQRVSGLQGSDALNIQQNQTSGGSLQAGQQKE 387
Query: 417 GKSNNQ 422
G+ N Q
Sbjct: 388 GEQNQQ 393
>gi|218751903 Sp1 transcription factor isoform b [Homo sapiens]
Length = 778
Score = 34.7 bits (78), Expect = 0.18
Identities = 37/126 (29%), Positives = 48/126 (38%), Gaps = 32/126 (25%)
Query: 317 SSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNT 376
SS + T SSS +S + P ++G + S SL SSQA T +
Sbjct: 273 SSQAVTISSSGSQESGSQPV----------TSGTTISS--ASLVSSQASSSSFFTNANSY 320
Query: 377 SNSTNKSQHGSARLFRSSSKGF--QGTT------------------QTSHGSLMTNKQHQ 416
S +T S G S S G QG T QTS GSL +Q +
Sbjct: 321 STTTTTSNMGIMNFTTSGSSGTNSQGQTPQRVSGLQGSDALNIQQNQTSGGSLQAGQQKE 380
Query: 417 GKSNNQ 422
G+ N Q
Sbjct: 381 GEQNQQ 386
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 34.7 bits (78), Expect = 0.18
Identities = 21/87 (24%), Positives = 36/87 (41%)
Query: 347 STGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSH 406
S G S S + S+ T+++S S++ S S+R SSS G++
Sbjct: 562 SRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDS 621
Query: 407 GSLMTNKQHQGKSNNQYYHGKKRKHKR 433
S ++ + H + RKH+R
Sbjct: 622 SSSTSSSSESRSRSRGRGHNRDRKHRR 648
Score = 30.4 bits (67), Expect = 3.4
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 13/118 (11%)
Query: 317 SSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNT 376
+S S ++SSSS S + ST + GS S SS S+ T+ +
Sbjct: 570 TSKSRSRSSSSSSSSSS-------------STSSSSGSSSSSGSSSSRSSSSSSSSTSGS 616
Query: 377 SNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQYYHGKKRKHKRD 434
S+ + S S+ RS S+G H + K+ + + K RD
Sbjct: 617 SSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRD 674
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 34.7 bits (78), Expect = 0.18
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 319 SSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSN 378
+SA SS+ +S K LL PS V S+D E + + + +S+
Sbjct: 788 NSAGHKPSSNRESSKQSAAKEKDLL--PSPAGPVPSKDPKTEHGSRKRTISQSSSLKSSS 845
Query: 379 STNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNN 421
++NK GS++ S+SK + +TS S ++ S+N
Sbjct: 846 NSNKETSGSSKNSSSTSKQKKTEGKTSSSSKEVKEKAPSSSSN 888
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 33.5 bits (75), Expect = 0.40
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 311 SCNGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQS 370
S N SS S+ S SSD SD++ K+ S+ + S SS + S
Sbjct: 598 SSNSSDSSDSSDSSDSSD-SSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDS 656
Query: 371 TQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNN 421
+ ++N+SNS++ S S SSS ++ +S S +N S++
Sbjct: 657 SDSSNSSNSSDSSD-SSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSD 706
Score = 30.0 bits (66), Expect = 4.4
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Query: 311 SCNGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQS 370
S N SS S+ S S DS + + S + S +SS + S
Sbjct: 888 SSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDS 947
Query: 371 TQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNN 421
+ ++N+S+S+N S S+ SS ++ +S+ S ++ S++
Sbjct: 948 SDSSNSSDSSNSSD--SSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSD 996
Score = 29.6 bits (65), Expect = 5.7
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 306 NRPEPSCNGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAV 365
N + S + S S+++ SS S SD++ + N S D SS +
Sbjct: 958 NSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSD----SSDSS 1013
Query: 366 GKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNN 421
S+ ++N+S+S+N S + S S ++ +S S +N S++
Sbjct: 1014 DSSNSSDSSNSSDSSNSSDSSDS----SDSSDSSDSSDSSDSSDSSNSSDSSDSSD 1065
Score = 28.9 bits (63), Expect = 9.8
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 311 SCNGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQS 370
S N SS S+ S+SSD SD++ + + S + S +S+ + S
Sbjct: 737 SSNSSDSSDSSDSSNSSD-SSDSSDSSNSSDSSDSSDSSDSSDSSNSS-DSNDSSNSSDS 794
Query: 371 TQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNN 421
+ ++N+S+S+N S SS + +S+ S +N S+N
Sbjct: 795 SDSSNSSDSSNSSD--------SSDSSDSSDSDSSNSSDSSNSSDSSDSSN 837
>gi|39777614 SS18-like protein 1 [Homo sapiens]
Length = 396
Score = 33.5 bits (75), Expect = 0.40
Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Query: 315 PVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTT 374
P + + + S S S A P + + + GN V +++++S+ Q T+
Sbjct: 137 PNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNYVSRTNINMQSNPVSMMQQQAATS 196
Query: 375 NTSNSTNKSQHGSAR-LFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQY-----YHGKK 428
+ S++ SQH + +G QG++ + + Q S+ QY Y+G++
Sbjct: 197 HYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQ 256
Query: 429 RKHKRDA 435
H + A
Sbjct: 257 YSHSQGA 263
>gi|122114658 hypothetical protein LOC23053 [Homo sapiens]
Length = 1842
Score = 33.1 bits (74), Expect = 0.52
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 9/120 (7%)
Query: 302 WGLKNRPEPSCNGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRP-STGNRVGSQDVSLE 360
WG RP+ G S S+ ++S DS T + P + P S G S +S
Sbjct: 1133 WGSPGRPKKKHTGMASIDSSAPETTS--DSSPTLSRRPLRGGWAPTSWGRGQDSDSISSS 1190
Query: 361 SSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSN 420
SS ++G ++++S S S G AR ++G SH + N+ + ++
Sbjct: 1191 SSDSLG------SSSSSGSRRASASGGARAKTVEVGRYKGRRPESHAPHVPNQPSEAAAH 1244
>gi|42518068 trans-golgi network protein 2 [Homo sapiens]
Length = 437
Score = 33.1 bits (74), Expect = 0.52
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 12/135 (8%)
Query: 310 PSCNGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQ 369
PS + S +Q S P +TPK + S + + ++A +
Sbjct: 35 PSAGNVSTHPSLSQRPGGSTKSHPEP-QTPKDSPSKSSAEAQTPEDTPNKSGAEAKTQKD 93
Query: 370 STQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKS--------NN 421
S+ N S + K+Q GS S ++ + +T SH L T K GKS ++
Sbjct: 94 SS---NKSGAEAKTQKGSTSKSGSEAQTTKDSTSKSHPELQTPKDSTGKSGAEAQTPEDS 150
Query: 422 QYYHGKKRKHKRDAP 436
G + K ++D+P
Sbjct: 151 PNRSGAEAKTQKDSP 165
>gi|21450808 PARK2 co-regulated-like isoform 1 [Homo sapiens]
Length = 221
Score = 33.1 bits (74), Expect = 0.52
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 89 IIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKK-YPVLPYLVLVLKQFLLQRDLNEVF 147
+I L + E K +F + G R L+K +K P+LP L+ VLK L+ D +EVF
Sbjct: 117 LITLAEGLRETKHPYTFVSKEGFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSD-DEVF 175
Query: 148 TGGIGS 153
G+ +
Sbjct: 176 ERGLNA 181
>gi|161016767 mucin 21 [Homo sapiens]
Length = 566
Score = 33.1 bits (74), Expect = 0.52
Identities = 21/91 (23%), Positives = 36/91 (39%)
Query: 318 SSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTS 377
+S+AT S SS V S A+ T + S+ ++ S + + TT++
Sbjct: 372 TSTATNSESSTVSSGASTATTSESSTTSSGASTATNSESSTVSSGASTATNSESSTTSSG 431
Query: 378 NSTNKSQHGSARLFRSSSKGFQGTTQTSHGS 408
+T + S S + G TSH +
Sbjct: 432 ANTATNSGSSVTSAGSGTAALTGMHTTSHSA 462
Score = 28.9 bits (63), Expect = 9.8
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 318 SSSATQSSSSDVDSDATPCKTPKQLLCRP--STGNRVGSQDVSLESSQAVGKMQSTQT-- 373
+S+AT S SS S+A+ + ST S VS +S A ST +
Sbjct: 147 ASTATNSDSSTTSSEASTATNSESSTTSSGASTATNSESSTVSSRASTATNSESSTTSSG 206
Query: 374 ----TNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGS 408
TN+ + T + G+A SS+ +T T+ S
Sbjct: 207 ASTATNSESRTTSNGAGTATNSESSTTSSGASTATNSES 245
>gi|151301228 formin binding protein 3 [Homo sapiens]
Length = 930
Score = 33.1 bits (74), Expect = 0.52
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 371 TQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQYYHGKKRK 430
+++ + S+S + H + RS S+ + + H S +++ KS KKR+
Sbjct: 799 SRSRSGSDSDDDDSHSKKKRQRSESR-----SASEHSSSAESERSYKKSKKHKKKSKKRR 853
Query: 431 HKRDAPLSD 439
HK D+P SD
Sbjct: 854 HKSDSPESD 862
>gi|50083281 KIAA1853 protein [Homo sapiens]
Length = 611
Score = 32.7 bits (73), Expect = 0.68
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 307 RPEPSCNGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVG 366
RP PS +G +SS+S+ SSSS + + ++ + R + R S S S + G
Sbjct: 521 RPSPSSSGSLSSTSSWYSSSSSRSASRSYSRSRSRSRSRRRSRTRTSSS--SSSRSPSPG 578
Query: 367 KMQSTQTTNTSNSTNKSQHGS 387
+++ + S S ++SQ S
Sbjct: 579 SRSRSRSRSRSRSRSRSQSRS 599
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.7 bits (73), Expect = 0.68
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 311 SCNGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPS---TGNRVGSQDVSLESSQAVGK 367
S + SSSS++ SSSSD + + P + L PS + E + A K
Sbjct: 2545 SSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRK 2604
Query: 368 MQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGS 408
+S+ ++++S+S++ S S+ SSS ++ +S S
Sbjct: 2605 RRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2645
Score = 28.9 bits (63), Expect = 9.8
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 311 SCNGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPST------GNRVG----------S 354
S + SSSS++ SSSS S +P K Q L +P++ G R
Sbjct: 2627 SSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLR 2686
Query: 355 QDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSK 396
SL S + S Q + ++ S+ GS R R S+
Sbjct: 2687 DSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSR 2728
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 32.3 bits (72), Expect = 0.88
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 315 PVSSSSATQSSSSDVDSDATPCKTPKQ----LLCRPSTGNRVGSQDVSLESSQAVGKMQS 370
PV++SS SSS+ + + P TP + L P + V S + S S+
Sbjct: 541 PVTTSSEASSSSTTPEGTSIPTSTPSEGSTPLTNMPVSTRLVVSSEASTTSTTPADSNTF 600
Query: 371 TQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTS 405
T++ ++S++ + G++ +S+ +GTT TS
Sbjct: 601 VTTSSEASSSSTTAEGTS--MPTSTYSERGTTITS 633
Score = 29.6 bits (65), Expect = 5.7
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 310 PSCNGPVSSSSATQSSSSDVDSDA------------TPCKTPKQLLCRPSTGNRVGSQDV 357
P N PV++S A+ S++ VDS++ TP + + PS G+ +
Sbjct: 1461 PVSNTPVANSEASTLSTTPVDSNSPVVTSTAVSSSPTPAEGTSIAISTPSEGSTALTSIP 1520
Query: 358 SLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQT-SHGS 408
++ A ++ S TT ST + + A +++ G T T S GS
Sbjct: 1521 VSTTTVASSEINSLSTTPAVTSTPVTTYSQASSSPTTADGTSMQTSTYSEGS 1572
Score = 29.3 bits (64), Expect = 7.5
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 310 PSCNGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVG-SQDVSLESSQAVGKM 368
P N PV+SS A+ S++ VDS+ TP T + P T E S + M
Sbjct: 3228 PVSNTPVASSEASILSTTPVDSN-TPLTTSTEASSSPPTAEGTSMPTSTPSEGSTPLTSM 3286
Query: 369 QSTQTTNTSNSTN 381
+ TT S+ T+
Sbjct: 3287 PVSTTTVASSETS 3299
>gi|25777645 small conductance calcium-activated potassium channel
protein 2 isoform a [Homo sapiens]
Length = 579
Score = 32.3 bits (72), Expect = 0.88
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
Query: 315 PVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTT 374
P+S+ SA++ + ++DS+A P + P S G G+ S ++ A S
Sbjct: 13 PLSNLSASRRNLHEMDSEAQPLQPP------ASVGGGGGASSPSAAAAAAAAVSSSAPEI 66
Query: 375 NTS-----NSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQYYHGKKR 429
S NS N + +G+ S+ G G + HGS K + K+ N G K
Sbjct: 67 VVSKPEHNNSNNLALYGTGG--GGSTGGGGGGGGSGHGSSSGTKSSKKKNQN---IGYKL 121
Query: 430 KHKR 433
H+R
Sbjct: 122 GHRR 125
>gi|226817313 SH3 and multiple ankyrin repeat domains 2 isoform 1
[Homo sapiens]
Length = 1849
Score = 32.0 bits (71), Expect = 1.2
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 273 PNNETESILGRIIRVTDEVATYRDWISKQWGLKNRPEPSCNGPV---------SSSSATQ 323
P +E I + + V + A + + KQ +++ PE +C+ P+ +SSS
Sbjct: 988 PYSEVGKIASKAVYVPAKPARRKGMLVKQSNVEDSPEKTCSIPIPTIIVKEPSTSSSGKS 1047
Query: 324 SSSSDVDSDATPCKTPKQLLCRPSTGNRVGS 354
S S ++ D + P QL RP V S
Sbjct: 1048 SQGSSMEIDPQAPEPPSQL--RPDESLTVSS 1076
>gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens]
Length = 1251
Score = 32.0 bits (71), Expect = 1.2
Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 32/141 (22%)
Query: 309 EPSCNGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKM 368
+P+C V SS + SSSS GS S +S + G
Sbjct: 425 QPNCRTSVPSSKGSSSSSSS------------------------GSSSSSSDSESSSGSD 460
Query: 369 QSTQTTNTSNSTNKSQHGSARLFRSSS-------KGFQGTTQTSHGSLMTNKQHQGKSNN 421
T+++++ + +K H S+ +S K L+ N+ H G +N
Sbjct: 461 SETESSSSESEGSKPPHFSSPEAEPASSNKWQLDKWLNKVNPHKPPILIQNESH-GSESN 519
Query: 422 QYYHGKKRKHKRDAPLSDLCR 442
QYY+ K + + D+C+
Sbjct: 520 QYYNPVKEDVQDCGKVPDVCQ 540
>gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens]
Length = 1226
Score = 32.0 bits (71), Expect = 1.2
Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 32/141 (22%)
Query: 309 EPSCNGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKM 368
+P+C V SS + SSSS GS S +S + G
Sbjct: 400 QPNCRTSVPSSKGSSSSSSS------------------------GSSSSSSDSESSSGSD 435
Query: 369 QSTQTTNTSNSTNKSQHGSARLFRSSS-------KGFQGTTQTSHGSLMTNKQHQGKSNN 421
T+++++ + +K H S+ +S K L+ N+ H G +N
Sbjct: 436 SETESSSSESEGSKPPHFSSPEAEPASSNKWQLDKWLNKVNPHKPPILIQNESH-GSESN 494
Query: 422 QYYHGKKRKHKRDAPLSDLCR 442
QYY+ K + + D+C+
Sbjct: 495 QYYNPVKEDVQDCGKVPDVCQ 515
>gi|50962882 G patch domain containing 8 [Homo sapiens]
Length = 1502
Score = 32.0 bits (71), Expect = 1.2
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 346 PSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQTS 405
P+ VG + + S G+M + + + + NK + G + T+ +
Sbjct: 611 PNKSKEVGGEKIVRSSG---GRMDAPASGSACSGLNKQEPGGSH---------GSETEDT 658
Query: 406 HGSLMTNKQHQGKSNNQYYHGKKRKHKRDA 435
SL + K+ GKS+ H KK+KHK+ +
Sbjct: 659 GRSLPSKKERSGKSHR---HKKKKKHKKSS 685
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,379,991
Number of Sequences: 37866
Number of extensions: 701189
Number of successful extensions: 2884
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 2613
Number of HSP's gapped (non-prelim): 293
length of query: 442
length of database: 18,247,518
effective HSP length: 105
effective length of query: 337
effective length of database: 14,271,588
effective search space: 4809525156
effective search space used: 4809525156
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.