Guide to the Human Genome
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Name: PAPD4 Sequence: fasta or formatted (484aa) NCBI GI: 167555095
Description:

PAP associated domain containing 4

Referenced in:

Zinc Finger Proteins

Other entries for this name:
alt mRNA [484aa] PAP associated domain containing 4
alt mRNA [484aa] PAP associated domain containing 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         20           2
 C cysteine            1.9          9           1
 D aspartate           3.9         19           1
 E glutamate           5.4         26           2
 F phenylalanine       5.6         27           2
 G glycine             3.3         16           1
 H histidine           3.5         17           2
 I isoleucine          5.6         27           1
 K lysine              5.8         28           3
 L leucine            12.0         58           3
 M methionine          1.0          5           1
 N asparagine          5.2         25           2
 P proline             7.2         35           2
 Q glutamine           6.6         32           3
 R arginine            7.0         34           2
 S serine              7.2         35           2
 T threonine           4.3         21           1
 V valine              6.6         32           2
 W tryptophan          0.8          4           1
 Y tyrosine            2.9         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PAP associated domain containing 4 
PAPD4                 1.000   PAP associated domain containing 4 
PAPD4                 1.000   PAP associated domain containing 4 
ZCCHC6                0.139   zinc finger, CCHC domain containing 6 
ZCCHC11               0.131   zinc finger, CCHC domain containing 11 isoform a [Ho...
ZCCHC11               0.131   zinc finger, CCHC domain containing 11 isoform b [Ho...
ZCCHC11               0.131   zinc finger, CCHC domain containing 11 isoform c [Ho...
MTPAP                 0.064   PAP associated domain containing 1 
TUT1                  0.049   terminal uridylyl transferase 1, U6 snRNA-specific ...
POLS                  0.045   DNA polymerase sigma 
PAPD5                 0.035   PAP associated domain containing 5 isoform b 
PAPD5                 0.035   PAP associated domain containing 5 isoform a 
NFAT5                 0.007   nuclear factor of activated T-cells 5 isoform a [Hom...
NFAT5                 0.007   nuclear factor of activated T-cells 5 isoform c [Homo...
NFAT5                 0.007   nuclear factor of activated T-cells 5 isoform d [Ho...
NFAT5                 0.007   nuclear factor of activated T-cells 5 isoform b [Ho...
NFAT5                 0.007   nuclear factor of activated T-cells 5 isoform a [Hom...
ZNF75D                0.007   zinc finger protein 75 
CUX1                  0.006   cut-like homeobox 1 isoform a 
FJX1                  0.005   four jointed box 1 
C10orf18              0.004   hypothetical protein LOC54906 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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