Guide to the Human Genome
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Name: ZCCHC11 Sequence: fasta or formatted (1644aa) NCBI GI: 57863246
Description:

zinc finger, CCHC domain containing 11 isoform b

Referenced in:

Zinc Finger Proteins

Other entries for this name:
alt prot [1645aa] zinc finger, CCHC domain containing 11 isoform a
alt prot [1640aa] zinc finger, CCHC domain containing 11 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         96           3
 C cysteine            3.2         52           2
 D aspartate           6.0         99           3
 E glutamate           7.4        121           3
 F phenylalanine       3.6         60           3
 G glycine             4.7         77           2
 H histidine           2.2         36           1
 I isoleucine          5.2         85           2
 K lysine              8.8        144           3
 L leucine             8.8        144           3
 M methionine          1.7         28           1
 N asparagine          5.2         86           3
 P proline             6.9        114           3
 Q glutamine           4.7         78           3
 R arginine            5.4         89           2
 S serine              8.5        139           3
 T threonine           4.3         71           2
 V valine              4.7         78           3
 W tryptophan          0.7         12           1
 Y tyrosine            2.1         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, CCHC domain containing 11 isoform b [Ho... 
ZCCHC11               0.998   zinc finger, CCHC domain containing 11 isoform a [Ho...
ZCCHC11               0.996   zinc finger, CCHC domain containing 11 isoform c [Ho...
ZCCHC6                0.179   zinc finger, CCHC domain containing 6 
PAPD4                 0.038   PAP associated domain containing 4 
PAPD4                 0.038   PAP associated domain containing 4 
PAPD4                 0.038   PAP associated domain containing 4 
TUT1                  0.027   terminal uridylyl transferase 1, U6 snRNA-specific ...
MTPAP                 0.022   PAP associated domain containing 1 
RAD50                 0.008   RAD50 homolog isoform 2 
RAD50                 0.008   RAD50 homolog isoform 1 
PTPN23                0.008   protein tyrosine phosphatase, non-receptor type 23 [...
POLS                  0.007   DNA polymerase sigma 
SFPQ                  0.007   splicing factor proline/glutamine rich (polypyrimidin...
ZFR                   0.007   zinc finger RNA binding protein 
PAPD5                 0.007   PAP associated domain containing 5 isoform b 
PAPD5                 0.007   PAP associated domain containing 5 isoform a 
MYST3                 0.007   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.007   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.007   MYST histone acetyltransferase (monocytic leukemia)...
CNBP                  0.006   zinc finger protein 9 isoform 6 
CNBP                  0.006   zinc finger protein 9 isoform 3 
ATN1                  0.006   atrophin-1 
ATN1                  0.006   atrophin-1 
PHLDA1                0.006   pleckstrin homology-like domain, family A, member 1 ...
RERE                  0.006   atrophin-1 like protein isoform b 
RERE                  0.006   atrophin-1 like protein isoform a 
RERE                  0.006   atrophin-1 like protein isoform a 
SH2D2A                0.006   SH2 domain protein 2A isoform 4 
SH2D2A                0.006   SH2 domain protein 2A isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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