Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 94536807
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94536807 U2 small nuclear RNA auxiliary factor 1-like 4
isoform 2 [Homo sapiens]
(202 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94536807 U2 small nuclear RNA auxiliary factor 1-like 4 isofo... 423 e-119
gi|94536809 U2 small nuclear RNA auxiliary factor 1-like 4 isofo... 222 1e-58
gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [H... 187 5e-48
gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Ho... 187 5e-48
gi|89038927 PREDICTED: similar to U2 small nuclear RNA auxillary... 150 7e-37
gi|89038281 PREDICTED: similar to U2 small nuclear RNA auxillary... 150 7e-37
gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [H... 117 9e-27
gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo ... 74 6e-14
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 35 0.043
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 35 0.043
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 35 0.043
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 33 0.22
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 33 0.22
gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens] 32 0.37
gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens] 32 0.37
gi|224549005 RNA binding motif protein 17 [Homo sapiens] 32 0.37
gi|14249678 RNA binding motif protein 17 [Homo sapiens] 32 0.37
gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s... 32 0.48
gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s... 32 0.48
gi|54792138 helicase with zinc finger domain [Homo sapiens] 32 0.48
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 31 0.63
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 31 0.63
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s... 31 0.63
gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa... 31 0.63
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 31 0.63
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 31 0.63
gi|32171205 EF-hand domain family, member A2 [Homo sapiens] 31 0.82
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 31 0.82
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 31 0.82
gi|209862867 poly-U binding splicing factor 60KDa isoform c [Hom... 30 1.1
>gi|94536807 U2 small nuclear RNA auxiliary factor 1-like 4 isoform
2 [Homo sapiens]
Length = 202
Score = 423 bits (1088), Expect = e-119
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEM 60
MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEM
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEM 60
Query: 61 NVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGNVPEVASATSCICGPFP 120
NVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGNVPEVASATSCICGPFP
Sbjct: 61 NVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGNVPEVASATSCICGPFP 120
Query: 121 RTSRGSSMGGDPGAGHPRGSILATIPERGTIGVPLITGMAASEALAPLPFTPNRDRCSWQ 180
RTSRGSSMGGDPGAGHPRGSILATIPERGTIGVPLITGMAASEALAPLPFTPNRDRCSWQ
Sbjct: 121 RTSRGSSMGGDPGAGHPRGSILATIPERGTIGVPLITGMAASEALAPLPFTPNRDRCSWQ 180
Query: 181 DLSSKPPSLSCPILPRLPGSIM 202
DLSSKPPSLSCPILPRLPGSIM
Sbjct: 181 DLSSKPPSLSCPILPRLPGSIM 202
>gi|94536809 U2 small nuclear RNA auxiliary factor 1-like 4 isoform
1 [Homo sapiens]
Length = 181
Score = 222 bits (566), Expect = 1e-58
Identities = 105/116 (90%), Positives = 106/116 (91%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEM 60
MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEM
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYGEIEEM 60
Query: 61 NVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGNVPEVASATSCIC 116
NVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHG + V C
Sbjct: 61 NVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGELSPVTDFRESCC 116
>gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [Homo
sapiens]
Length = 240
Score = 187 bits (475), Expect = 5e-48
Identities = 93/155 (60%), Positives = 101/155 (65%), Gaps = 39/155 (25%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQ---------------- 44
MAEYLASIFGTEKDKVNCSFYFKIG CRHGDRCSRLHNKPTFSQ
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ 60
Query: 45 -----------------------EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 81
EVFTE++EKYGE+EEMNVCDNLGDHLVGNVYVKFRRE
Sbjct: 61 TADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 82 EDGERAVAELSNRWFNGQAVHGNVPEVASATSCIC 116
ED E+AV +L+NRWFNGQ +H + V C
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACC 155
>gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Homo
sapiens]
Length = 240
Score = 187 bits (475), Expect = 5e-48
Identities = 93/155 (60%), Positives = 101/155 (65%), Gaps = 39/155 (25%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQ---------------- 44
MAEYLASIFGTEKDKVNCSFYFKIG CRHGDRCSRLHNKPTFSQ
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60
Query: 45 -----------------------EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 81
EVFTE++EKYGE+EEMNVCDNLGDHLVGNVYVKFRRE
Sbjct: 61 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 82 EDGERAVAELSNRWFNGQAVHGNVPEVASATSCIC 116
ED E+AV +L+NRWFNGQ +H + V C
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACC 155
>gi|89038927 PREDICTED: similar to U2 small nuclear RNA auxillary
factor 1 [Homo sapiens]
Length = 243
Score = 150 bits (379), Expect = 7e-37
Identities = 82/155 (52%), Positives = 89/155 (57%), Gaps = 41/155 (26%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQ---------------- 44
MAE ASIFGTEK VNCSF FKIG C HGDRCS LH+KPTFSQ
Sbjct: 1 MAECPASIFGTEK--VNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIYCNPQNASQ 58
Query: 45 -----------------------EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 81
EVF EL EKYGE+EEMNVCDNLGDHLVGNVY K RE
Sbjct: 59 SADGLRCALSDVEVQEHYDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPRE 118
Query: 82 EDGERAVAELSNRWFNGQAVHGNVPEVASATSCIC 116
ED E+AV +L+NRWFNGQ +H + V C
Sbjct: 119 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFRGACC 153
>gi|89038281 PREDICTED: similar to U2 small nuclear RNA auxillary
factor 1 [Homo sapiens]
Length = 243
Score = 150 bits (379), Expect = 7e-37
Identities = 82/155 (52%), Positives = 89/155 (57%), Gaps = 41/155 (26%)
Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQ---------------- 44
MAE ASIFGTEK VNCSF FKIG C HGDRCS LH+KPTFSQ
Sbjct: 1 MAECPASIFGTEK--VNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIYCNPQNASQ 58
Query: 45 -----------------------EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 81
EVF EL EKYGE+EEMNVCDNLGDHLVGNVY K RE
Sbjct: 59 SADGLRCALSDVEVQEHSDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPRE 118
Query: 82 EDGERAVAELSNRWFNGQAVHGNVPEVASATSCIC 116
ED E+AV +L+NRWFNGQ +H + V C
Sbjct: 119 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFRGACC 153
>gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [Homo
sapiens]
Length = 167
Score = 117 bits (292), Expect = 9e-27
Identities = 51/75 (68%), Positives = 60/75 (80%)
Query: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAV 101
F +EVFTE++EKYGE+EEMNVCDNLGDHLVGNVYVKFRREED E+AV +L+NRWFNGQ +
Sbjct: 8 FFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 67
Query: 102 HGNVPEVASATSCIC 116
H + V C
Sbjct: 68 HAELSPVTDFREACC 82
>gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo
sapiens]
Length = 482
Score = 74.3 bits (181), Expect = 6e-14
Identities = 46/150 (30%), Positives = 65/150 (43%), Gaps = 42/150 (28%)
Query: 12 EKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFS---------------------------- 43
EKD+ NC FY K G CR GDRCSR HN PT S
Sbjct: 166 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASL 225
Query: 44 ----QEVFTELQEKY----------GEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVA 89
+E + + + Y G++ + V NL HL GNVYV+++ EE+ + A++
Sbjct: 226 EYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALS 285
Query: 90 ELSNRWFNGQAVHGNVPEVASATSCICGPF 119
+ RW+ G+ + V ICG F
Sbjct: 286 LFNGRWYAGRQLQCEFCPVTRWKMAICGLF 315
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 35.0 bits (79), Expect = 0.043
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 118 PFPRTSRGSSMGGDPGAGHPRG----SILATIPERGTIGVPLITGMAASEALAPLPFTPN 173
P P +GS G+PG P G ++L + E+G G+P I G++ + LP P
Sbjct: 934 PGPTGEKGSK--GEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPG 991
Query: 174 RDRCSWQ-DLSSKPPSLSCPILPRLPGSI 201
+ S Q L P P LP PG I
Sbjct: 992 QPGLSGQPGLPGPPGPKGNPGLPGQPGLI 1020
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 35.0 bits (79), Expect = 0.043
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 118 PFPRTSRGSSMGGDPGAGHPRG----SILATIPERGTIGVPLITGMAASEALAPLPFTPN 173
P P +GS G+PG P G ++L + E+G G+P I G++ + LP P
Sbjct: 934 PGPTGEKGSK--GEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPG 991
Query: 174 RDRCSWQ-DLSSKPPSLSCPILPRLPGSI 201
+ S Q L P P LP PG I
Sbjct: 992 QPGLSGQPGLPGPPGPKGNPGLPGQPGLI 1020
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 35.0 bits (79), Expect = 0.043
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 118 PFPRTSRGSSMGGDPGAGHPRG----SILATIPERGTIGVPLITGMAASEALAPLPFTPN 173
P P +GS G+PG P G ++L + E+G G+P I G++ + LP P
Sbjct: 934 PGPTGEKGSK--GEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPG 991
Query: 174 RDRCSWQ-DLSSKPPSLSCPILPRLPGSI 201
+ S Q L P P LP PG I
Sbjct: 992 QPGLSGQPGLPGPPGPKGNPGLPGQPGLI 1020
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 32.7 bits (73), Expect = 0.22
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 118 PFPRTSRGSSMGGDPGAGHPRGSILATIPERGTIGVPLITGMAASEALAPLP 169
P P+ RG MGG PGA PRG E+G IG P I G L +P
Sbjct: 356 PGPKGDRG--MGGVPGALGPRG-------EKGPIGAPGIGGPPGEPGLPGIP 398
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 32.7 bits (73), Expect = 0.22
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 118 PFPRTSRGSSMGGDPGAGHPRGSILATIPERGTIGVPLITGMAASEALAPLP 169
P P+ RG MGG PGA PRG E+G IG P I G L +P
Sbjct: 356 PGPKGDRG--MGGVPGALGPRG-------EKGPIGAPGIGGPPGEPGLPGIP 398
>gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens]
Length = 329
Score = 32.0 bits (71), Expect = 0.37
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 21 YFKIGVCRHGDRCSRLHNKPTFSQE-VFTELQEK 53
YF+ G C +GDRC H+KP +E TEL K
Sbjct: 92 YFQRGYCIYGDRCRYEHSKPLKQEEATATELTTK 125
>gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens]
Length = 482
Score = 32.0 bits (71), Expect = 0.37
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 21 YFKIGVCRHGDRCSRLHNKPTFSQE-VFTELQEK 53
YF+ G C +GDRC H+KP +E TEL K
Sbjct: 92 YFQRGYCIYGDRCRYEHSKPLKQEEATATELTTK 125
>gi|224549005 RNA binding motif protein 17 [Homo sapiens]
Length = 401
Score = 32.0 bits (71), Expect = 0.37
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 52 EKYGEIEEMNVCDNLG--DHLVGNVYVKFRREEDGERAVAELSNRWFNGQAV 101
EKYG++ + + + G D ++++F R E +AV +L+ R+F G+ V
Sbjct: 331 EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 382
>gi|14249678 RNA binding motif protein 17 [Homo sapiens]
Length = 401
Score = 32.0 bits (71), Expect = 0.37
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 52 EKYGEIEEMNVCDNLG--DHLVGNVYVKFRREEDGERAVAELSNRWFNGQAV 101
EKYG++ + + + G D ++++F R E +AV +L+ R+F G+ V
Sbjct: 331 EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 382
>gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo
sapiens]
Length = 484
Score = 31.6 bits (70), Expect = 0.48
Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 51/191 (26%)
Query: 43 SQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVH 102
S++ L E +G IEE + + G +VK+ + + A+ A+H
Sbjct: 163 SEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAI----------NALH 212
Query: 103 GNVPEVASATSCICGPFPRTS------RGSSMGGDPGAGHP-----------------RG 139
G+ + A+S + F T R M G G +P +
Sbjct: 213 GS-QTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQAMQQQA 271
Query: 140 SILATIPERGTIGVPLITGMAAS---------EALAPLPFTPNRDRCSWQDLSSKPPSLS 190
+++A++ + G + P+ AA LA P TP S PP ++
Sbjct: 272 ALMASVAQGGYLN-PMAAFAAAQMQQMAALNMNGLAAAPMTPTSG-------GSTPPGIT 323
Query: 191 CPILPRLPGSI 201
P +P +P I
Sbjct: 324 APAVPSIPSPI 334
>gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo
sapiens]
Length = 485
Score = 31.6 bits (70), Expect = 0.48
Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 51/191 (26%)
Query: 43 SQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVH 102
S++ L E +G IEE + + G +VK+ + + A+ A+H
Sbjct: 164 SEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAI----------NALH 213
Query: 103 GNVPEVASATSCICGPFPRTS------RGSSMGGDPGAGHP-----------------RG 139
G+ + A+S + F T R M G G +P +
Sbjct: 214 GS-QTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQAMQQQA 272
Query: 140 SILATIPERGTIGVPLITGMAAS---------EALAPLPFTPNRDRCSWQDLSSKPPSLS 190
+++A++ + G + P+ AA LA P TP S PP ++
Sbjct: 273 ALMASVAQGGYLN-PMAAFAAAQMQQMAALNMNGLAAAPMTPTSG-------GSTPPGIT 324
Query: 191 CPILPRLPGSI 201
P +P +P I
Sbjct: 325 APAVPSIPSPI 335
>gi|54792138 helicase with zinc finger domain [Homo sapiens]
Length = 1942
Score = 31.6 bits (70), Expect = 0.48
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 18 CSFYFKIGVCRHGDRCSRLHNKPTFSQEVFTELQEKYG----EIEEMNVCDNLGDHLVGN 73
C + + G+CR+G +C+ H SQE E Q++Y ++++ N L +
Sbjct: 184 CKRFLEQGICRYGAQCTSAH-----SQEELAEWQKRYASRLIKLKQQNENKQLSGSYMET 238
Query: 74 VYVKFRREEDGERAVAE 90
+ K+ E+ ++E
Sbjct: 239 LIEKWMNSLSPEKVLSE 255
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 31.2 bits (69), Expect = 0.63
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 53 KYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAV 101
K+G+I ++ + D H G V FR E+ + + L RWF G+ +
Sbjct: 297 KFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQI 342
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 31.2 bits (69), Expect = 0.63
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 53 KYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAV 101
K+G+I ++ + D H G V FR E+ + + L RWF G+ +
Sbjct: 297 KFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQI 342
>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
sapiens]
Length = 448
Score = 31.2 bits (69), Expect = 0.63
Identities = 40/192 (20%), Positives = 69/192 (35%), Gaps = 52/192 (27%)
Query: 43 SQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVH 102
S++ L E +G IEE + + G +VK+ + + A+ A+H
Sbjct: 154 SEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAI----------NALH 203
Query: 103 GNVPEVASATSCICGPFPRTS------RGSSMGGDPGAGHP------------------R 138
G+ + A+S + F T R M G G +P +
Sbjct: 204 GS-QTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQ 262
Query: 139 GSILATIPERGTIGVPLITGMAAS---------EALAPLPFTPNRDRCSWQDLSSKPPSL 189
+++A++ + G + P+ AA LA P TP S PP +
Sbjct: 263 AALMASVAQGGYLN-PMAAFAAAQMQQMAALNMNGLAAAPMTPTSG-------GSTPPGI 314
Query: 190 SCPILPRLPGSI 201
+ P +P +P I
Sbjct: 315 TAPAVPSIPSPI 326
>gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo
sapiens]
Length = 486
Score = 31.2 bits (69), Expect = 0.63
Identities = 40/192 (20%), Positives = 69/192 (35%), Gaps = 52/192 (27%)
Query: 43 SQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVH 102
S++ L E +G IEE + + G +VK+ + + A+ A+H
Sbjct: 164 SEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAI----------NALH 213
Query: 103 GNVPEVASATSCICGPFPRTS------RGSSMGGDPGAGHP------------------R 138
G+ + A+S + F T R M G G +P +
Sbjct: 214 GS-QTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQ 272
Query: 139 GSILATIPERGTIGVPLITGMAAS---------EALAPLPFTPNRDRCSWQDLSSKPPSL 189
+++A++ + G + P+ AA LA P TP S PP +
Sbjct: 273 AALMASVAQGGYLN-PMAAFAAAQMQQMAALNMNGLAAAPMTPTSG-------GSTPPGI 324
Query: 190 SCPILPRLPGSI 201
+ P +P +P I
Sbjct: 325 TAPAVPSIPSPI 336
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 31.2 bits (69), Expect = 0.63
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 45 EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVH 102
E +L K+G + V + G +V F R ED ++AV E++ + NG+ ++
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 31.2 bits (69), Expect = 0.63
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 45 EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVH 102
E +L K+G + V + G +V F R ED ++AV E++ + NG+ ++
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Score = 27.3 bits (59), Expect = 9.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 54 YGEIEEMNV-CDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAV 101
+G I NV CD G G +V F E ERA+ +++ NG+ V
Sbjct: 122 FGNILSCNVVCDENGSKGYG--FVHFETHEAAERAIKKMNGMLLNGRKV 168
>gi|32171205 EF-hand domain family, member A2 [Homo sapiens]
Length = 530
Score = 30.8 bits (68), Expect = 0.82
Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 20/98 (20%)
Query: 78 FRREEDGERAVAELS----NRWFNGQAVHGNVPEVASATSCICGPFPRTSRGSSMGGDPG 133
F ED ERAVAE + RW G + A+A + G G G P
Sbjct: 43 FSSREDEERAVAEAAWRRRRRW-------GELSVAAAAGGGLVGLVCYQLYGDPRAGSPA 95
Query: 134 AGHPRGSILATIPE-----RGTIGVPLITGMAASEALA 166
G P S AT PE RG + +P+ AA E +A
Sbjct: 96 TGRPSKS-AATEPEDPPRGRGMLPIPV---AAAKETVA 129
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 30.8 bits (68), Expect = 0.82
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 80 REEDGERAVAELSNRWFNGQAVHGNVPEVASATSCICGPFPRTSRGSSMGGDPGAGHPRG 139
RE G A +LS G V G P +A A I PF G ++GG P + H
Sbjct: 2212 REPPGAPAGGQLS---LLGSDVDG--PSLAKAP--ISAPFVHEGLGVAVGGFPASRHGSP 2264
Query: 140 SILATIPERGTIGVPLITGMAASEALAPLPFT 171
S A +P + P++ A P T
Sbjct: 2265 SRSARVPPFNYVPSPMVVAATTDSAAEKAPAT 2296
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 30.8 bits (68), Expect = 0.82
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 12 EKDKVNCSFYFKIGVCRHGDRCSRLHN 38
EK K C +Y + G C G+RC +H+
Sbjct: 667 EKRKEYCMYYNRFGRCNRGERCPYIHD 693
>gi|209862867 poly-U binding splicing factor 60KDa isoform c [Homo
sapiens]
Length = 516
Score = 30.4 bits (67), Expect = 1.1
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 51 QEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGNV 105
QEK GE E+ + + ++V+F + +A+ L+ RWF G+ V V
Sbjct: 457 QEKQGEEEDAEI--------IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 503
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,173,762
Number of Sequences: 37866
Number of extensions: 457191
Number of successful extensions: 1702
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 1644
Number of HSP's gapped (non-prelim): 127
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.