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Search of human proteins with 94400921
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94400921 trypsin domain containing 1 isoform a [Homo
sapiens]
(566 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94400921 trypsin domain containing 1 isoform a [Homo sapiens] 1154 0.0
gi|94400923 trypsin domain containing 1 isoform b [Homo sapiens] 800 0.0
gi|7019477 HtrA serine peptidase 2 isoform 1 preproprotein [Homo... 40 0.007
gi|148727370 immediate early response 5-like [Homo sapiens] 39 0.017
gi|6912492 mitogen-activated protein kinase 8 interacting protei... 37 0.048
gi|7706537 mitogen-activated protein kinase 8 interacting protei... 37 0.048
gi|28557729 hypothetical protein LOC283687 [Homo sapiens] 34 0.31
gi|194363768 homeobox D9 [Homo sapiens] 33 0.70
gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo ... 33 0.91
gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo ... 33 0.91
gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens] 33 0.91
gi|89257348 homeo box HB9 [Homo sapiens] 33 0.91
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 32 1.2
gi|33186901 hypothetical protein LOC359845 [Homo sapiens] 32 1.2
gi|17978479 vacuolar protein sorting 16 isoform 1 [Homo sapiens] 32 1.6
gi|17978481 vacuolar protein sorting 16 isoform 3 [Homo sapiens] 32 1.6
gi|38455396 neurogenin 1 [Homo sapiens] 32 1.6
gi|239748695 PREDICTED: hypothetical protein [Homo sapiens] 32 1.6
gi|239742718 PREDICTED: hypothetical protein XP_002342622 [Homo ... 32 1.6
gi|58801559 complement component 1, q subcomponent-like 3 [Homo ... 32 1.6
gi|226817316 SH3 domain containing 20 [Homo sapiens] 32 1.6
gi|21955174 kinesin family member C2 [Homo sapiens] 32 1.6
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 32 2.0
gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo ... 32 2.0
gi|239753493 PREDICTED: hypothetical protein [Homo sapiens] 32 2.0
gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo ... 32 2.0
gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo ... 32 2.0
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 32 2.0
gi|126723547 hypothetical protein LOC57523 [Homo sapiens] 32 2.0
gi|24371241 zinc finger, DHHC-type containing 14 isoform 1 [Homo... 32 2.0
>gi|94400921 trypsin domain containing 1 isoform a [Homo sapiens]
Length = 566
Score = 1154 bits (2984), Expect = 0.0
Identities = 566/566 (100%), Positives = 566/566 (100%)
Query: 1 MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG 60
MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG
Sbjct: 1 MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG 60
Query: 61 SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP 120
SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP
Sbjct: 61 SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP 120
Query: 121 SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR 180
SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR
Sbjct: 121 SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR 180
Query: 181 ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC 240
ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC
Sbjct: 181 ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC 240
Query: 241 GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA 300
GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA
Sbjct: 241 GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA 300
Query: 301 PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV 360
PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV
Sbjct: 301 PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV 360
Query: 361 AVAPRLVVTCRHVSPREAARVLVRSTTPKSVAIWGRVVFATQETCPYDIAVVSLEEDLDD 420
AVAPRLVVTCRHVSPREAARVLVRSTTPKSVAIWGRVVFATQETCPYDIAVVSLEEDLDD
Sbjct: 361 AVAPRLVVTCRHVSPREAARVLVRSTTPKSVAIWGRVVFATQETCPYDIAVVSLEEDLDD 420
Query: 421 VPIPVPAEHFHEGEAVSVVGFGVFGQSCGPSVTSGILSAVVQVNGTPVMLQTTCAVHSGS 480
VPIPVPAEHFHEGEAVSVVGFGVFGQSCGPSVTSGILSAVVQVNGTPVMLQTTCAVHSGS
Sbjct: 421 VPIPVPAEHFHEGEAVSVVGFGVFGQSCGPSVTSGILSAVVQVNGTPVMLQTTCAVHSGS 480
Query: 481 SGGPLFSNHSGNLLGIITSNTRDNNTGATYPHLNFSIPITVLQPALQQYSQTQDLGGLRE 540
SGGPLFSNHSGNLLGIITSNTRDNNTGATYPHLNFSIPITVLQPALQQYSQTQDLGGLRE
Sbjct: 481 SGGPLFSNHSGNLLGIITSNTRDNNTGATYPHLNFSIPITVLQPALQQYSQTQDLGGLRE 540
Query: 541 LDRAAEPVRVVWRLQRPLAEAPRSKL 566
LDRAAEPVRVVWRLQRPLAEAPRSKL
Sbjct: 541 LDRAAEPVRVVWRLQRPLAEAPRSKL 566
>gi|94400923 trypsin domain containing 1 isoform b [Homo sapiens]
Length = 398
Score = 800 bits (2066), Expect = 0.0
Identities = 389/389 (100%), Positives = 389/389 (100%)
Query: 1 MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG 60
MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG
Sbjct: 1 MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAG 60
Query: 61 SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP 120
SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP
Sbjct: 61 SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP 120
Query: 121 SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR 180
SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR
Sbjct: 121 SRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQLR 180
Query: 181 ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC 240
ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC
Sbjct: 181 ALGWFALLGVRLGQEEVEEERGPAMAVSPLGAVPKGAPLLVCGSPFGAFCPDIFLNTLSC 240
Query: 241 GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA 300
GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA
Sbjct: 241 GVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAA 300
Query: 301 PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV 360
PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV
Sbjct: 301 PLFRAARDALHRLPHSTAALAALLPPEVGVPWGLPLRDSGPLWAAAAVLVECGTVWGSGV 360
Query: 361 AVAPRLVVTCRHVSPREAARVLVRSTTPK 389
AVAPRLVVTCRHVSPREAARVLVRSTTPK
Sbjct: 361 AVAPRLVVTCRHVSPREAARVLVRSTTPK 389
>gi|7019477 HtrA serine peptidase 2 isoform 1 preproprotein [Homo
sapiens]
Length = 458
Score = 39.7 bits (91), Expect = 0.007
Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 25/190 (13%)
Query: 357 GSG-VAVAPRLVVTCRHVSPREAARVLVRSTTPKSVAIWGRVVFATQETCPYDIAVVSLE 415
GSG V A L+VT HV + RV VR + + + VV A + +
Sbjct: 182 GSGFVVAADGLIVTNAHVVA-DRRRVRVRLLSGDT---YEAVVTAVDPVADIATLRIQTK 237
Query: 416 EDLDDVPIPVPAEHFHEGEAVSVVGFGVFGQSCGPSVTSGILSAVVQVN---GTPVM--- 469
E L +P+ A+ +GE V +G Q+ ++TSGI+S+ + G P
Sbjct: 238 EPLPTLPLGRSAD-VRQGEFVVAMGSPFALQN---TITSGIVSSAQRPARDLGLPQTNVE 293
Query: 470 -LQTTCAVHSGSSGGPLFSNHSGNLLGIITSNTRDNNTGATYPHLNFSIPITVLQPALQQ 528
+QT A+ G+SGGPL N G ++G+ NT ++F+IP L+ L +
Sbjct: 294 YIQTDAAIDFGNSGGPLV-NLDGEVIGV--------NTMKVTAGISFAIPSDRLREFLHR 344
Query: 529 YSQTQDLGGL 538
+ G+
Sbjct: 345 GEKKNSSSGI 354
>gi|148727370 immediate early response 5-like [Homo sapiens]
Length = 404
Score = 38.5 bits (88), Expect = 0.017
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 78 RDDLRLHVQWAPT--AAGPGGGAERGRPGLCT--PQCASLEPGPPAPSRGRPLQPRLPAE 133
+ L H AP AA GA G G + P CA+L+P AP RG+PL+P P
Sbjct: 123 QQQLHQHQHPAPRGCAAAAAAGAPAGGAGALSELPGCAALQPPHGAPHRGQPLEPLQPGP 182
Query: 134 LLLLLSCP 141
L L P
Sbjct: 183 APLPLPLP 190
>gi|6912492 mitogen-activated protein kinase 8 interacting protein 2
isoform 1 [Homo sapiens]
Length = 824
Score = 37.0 bits (84), Expect = 0.048
Identities = 47/156 (30%), Positives = 59/156 (37%), Gaps = 34/156 (21%)
Query: 31 PWSCSGVI---LSRSPGLVLCHGGIFVPFLRAGSEVLTAAGAVFLPGDSCRDDLRLHVQW 87
PW S ++ +S + C G P R E ++ AG + +D Q
Sbjct: 348 PWLLSNLVSRMISEGSSPIRCPGQCLSPAPRPPGEPVSPAGG------AAQDS-----QD 396
Query: 88 APTAAGPGGGAERGRPGLCTPQCASLEPGPPAPSRGRPLQPRLPAELLLLL-----SCPA 142
AAGPGG LC P PPAP+ RP P P L L +
Sbjct: 397 PEAAAGPGGVELVDMETLCAPP-------PPAPAAPRP-GPAQPGPCLFLSNPTRDTITP 448
Query: 143 FWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQ 178
WA R AA R SAA +E EDEE D+
Sbjct: 449 LWAAPGR-----AARPGRACSAACSEE--EDEEDDE 477
>gi|7706537 mitogen-activated protein kinase 8 interacting protein 2
isoform 2 [Homo sapiens]
Length = 797
Score = 37.0 bits (84), Expect = 0.048
Identities = 47/156 (30%), Positives = 59/156 (37%), Gaps = 34/156 (21%)
Query: 31 PWSCSGVI---LSRSPGLVLCHGGIFVPFLRAGSEVLTAAGAVFLPGDSCRDDLRLHVQW 87
PW S ++ +S + C G P R E ++ AG + +D Q
Sbjct: 321 PWLLSNLVSRMISEGSSPIRCPGQCLSPAPRPPGEPVSPAGG------AAQDS-----QD 369
Query: 88 APTAAGPGGGAERGRPGLCTPQCASLEPGPPAPSRGRPLQPRLPAELLLLL-----SCPA 142
AAGPGG LC P PPAP+ RP P P L L +
Sbjct: 370 PEAAAGPGGVELVDMETLCAPP-------PPAPAAPRP-GPAQPGPCLFLSNPTRDTITP 421
Query: 143 FWAHFARLFGDEAAEQWRFSSAARDDEVSEDEEADQ 178
WA R AA R SAA +E EDEE D+
Sbjct: 422 LWAAPGR-----AARPGRACSAACSEE--EDEEDDE 450
>gi|28557729 hypothetical protein LOC283687 [Homo sapiens]
Length = 130
Score = 34.3 bits (77), Expect = 0.31
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 19/79 (24%)
Query: 84 HVQWAPTAAGPGGGAE-------------RGRPGLCTPQCASLEPGPPAPSRGRPLQPRL 130
H++ PTA P G + + R G +P ASLEP P +PR+
Sbjct: 24 HLRLLPTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPRV 83
Query: 131 PAELLLLLSCPAFWAHFAR 149
PAE S P W H AR
Sbjct: 84 PAE-----SGPG-WLHKAR 96
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 33.1 bits (74), Expect = 0.70
Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 17/119 (14%)
Query: 6 GSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPGLVLCHGGIFVPFLRAGSEVLT 65
G A AAE A C + P + +S S + P G++ P++ +
Sbjct: 55 GPAATAAEFASCSFA------PRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAAS 108
Query: 66 AAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAPSRGR 124
A+ PG R + + P AG GGG G PG PGP P+ GR
Sbjct: 109 ASE----PGRYVRSWME-PLPGFPGGAGGGGGGGGGGPG------RGPSPGPSGPANGR 156
>gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo
sapiens]
Length = 261
Score = 32.7 bits (73), Expect = 0.91
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 85 VQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAPSRGRPLQPRLPAELLLLLSCP 141
VQ P AA GGA GRPG L P R RP LP L+L+L P
Sbjct: 123 VQGGPCAARAEGGALHGRPGRDARPWRLLSACPSGRPRPRP----LPLPLMLMLMLP 175
>gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo
sapiens]
Length = 261
Score = 32.7 bits (73), Expect = 0.91
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 85 VQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAPSRGRPLQPRLPAELLLLLSCP 141
VQ P AA GGA GRPG L P R RP LP L+L+L P
Sbjct: 123 VQGGPCAARAEGGALHGRPGRDARPWRLLSACPSGRPRPRP----LPLPLMLMLMLP 175
>gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens]
Length = 666
Score = 32.7 bits (73), Expect = 0.91
Identities = 24/50 (48%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 89 PTAAGPGGGAERGRPGLCTPQCASLEPGPPAPSRGRPLQPRLPAELLLLL 138
P +GPGG R P L P L P PP P PL P LP LLLLL
Sbjct: 3 PGGSGPGG-CPRRPPALAGP----LPPPPPPPPP--PLLPLLPLLLLLLL 45
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 32.7 bits (73), Expect = 0.91
Identities = 25/55 (45%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 93 GPGGGAERGRPGLCTPQCASLEPGPPAPS----RGRPLQPRLPAELLLLLSCPAF 143
G GGGA G G C+P AS EP P AP+ P PRL A LL P F
Sbjct: 45 GGGGGASGGTSGSCSP--ASSEP-PAAPADRLRAESPSPPRLLAAHCALLPKPGF 96
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 32.3 bits (72), Expect = 1.2
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 94 PGGGAERGRPGLCTPQCASLEPGPPAPS--RGRP 125
PGG G+PG Q S PGPP PS RG+P
Sbjct: 542 PGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQP 575
>gi|33186901 hypothetical protein LOC359845 [Homo sapiens]
Length = 214
Score = 32.3 bits (72), Expect = 1.2
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 91 AAGPGGGAERGRPGLCTPQCASLEPGPPAPSRGRPLQP 128
AAG GGG PG P A+ P P+P+ PL P
Sbjct: 43 AAGGGGGERAAAPGTLEPDAAAATPAAPSPA-SLPLAP 79
>gi|17978479 vacuolar protein sorting 16 isoform 1 [Homo sapiens]
Length = 839
Score = 32.0 bits (71), Expect = 1.6
Identities = 42/168 (25%), Positives = 64/168 (38%), Gaps = 33/168 (19%)
Query: 247 AGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCA--AAPLFR 304
+G +LT A + G R + L AP CW T+LC A +
Sbjct: 142 SGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCW--------TVLCQDRVAHILL 193
Query: 305 AARDALHRLPHSTAALAALLPPEV--GVPWGLPLR------------DSGPLWAAAAVLV 350
A L+ L H AA +A+ PP + GV L + D+G +W A L
Sbjct: 194 AVGPDLYLLDH--AACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDTGYIWMGTASLK 251
Query: 351 ECGTVWGSGVAVAPRLVVTCRHVSPREAA-------RVLVRSTTPKSV 391
E + + P+ +V C +E A R++V P+S+
Sbjct: 252 EKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESI 299
>gi|17978481 vacuolar protein sorting 16 isoform 3 [Homo sapiens]
Length = 695
Score = 32.0 bits (71), Expect = 1.6
Identities = 42/168 (25%), Positives = 64/168 (38%), Gaps = 33/168 (19%)
Query: 247 AGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCA--AAPLFR 304
+G +LT A + G R + L AP CW T+LC A +
Sbjct: 142 SGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCW--------TVLCQDRVAHILL 193
Query: 305 AARDALHRLPHSTAALAALLPPEV--GVPWGLPLR------------DSGPLWAAAAVLV 350
A L+ L H AA +A+ PP + GV L + D+G +W A L
Sbjct: 194 AVGPDLYLLDH--AACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDTGYIWMGTASLK 251
Query: 351 ECGTVWGSGVAVAPRLVVTCRHVSPREAA-------RVLVRSTTPKSV 391
E + + P+ +V C +E A R++V P+S+
Sbjct: 252 EKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESI 299
>gi|38455396 neurogenin 1 [Homo sapiens]
Length = 237
Score = 32.0 bits (71), Expect = 1.6
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 94 PGGGAERGRPGLCTPQCASLEPGPPAPS 121
PGGGA R L PQC PGPP+P+
Sbjct: 156 PGGGA---RERLLPPQCVPCLPGPPSPA 180
>gi|239748695 PREDICTED: hypothetical protein [Homo sapiens]
Length = 101
Score = 32.0 bits (71), Expect = 1.6
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 96 GGAERGRPGLCTPQCASLEPGPPAPSRGRPLQP 128
GG RGRPG C GP AP+R RPL P
Sbjct: 2 GGPSRGRPGWRRCPC-----GPAAPTRRRPLLP 29
>gi|239742718 PREDICTED: hypothetical protein XP_002342622 [Homo
sapiens]
Length = 101
Score = 32.0 bits (71), Expect = 1.6
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 96 GGAERGRPGLCTPQCASLEPGPPAPSRGRPLQP 128
GG RGRPG C GP AP+R RPL P
Sbjct: 2 GGPSRGRPGWRRCPC-----GPAAPTRRRPLLP 29
>gi|58801559 complement component 1, q subcomponent-like 3 [Homo
sapiens]
Length = 255
Score = 32.0 bits (71), Expect = 1.6
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 68 GAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRPGLCTPQCASLEPGPPAP-----SR 122
G P + D L GP G E GRPG P+ EPGPP P +
Sbjct: 36 GGTKAPSTAATPDRGLMQSLPTFIQGPKG--EAGRPGKAGPRGPPGEPGPPGPMGPPGEK 93
Query: 123 GRPLQPRLP 131
G P + LP
Sbjct: 94 GEPGRQGLP 102
>gi|226817316 SH3 domain containing 20 [Homo sapiens]
Length = 263
Score = 32.0 bits (71), Expect = 1.6
Identities = 27/65 (41%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 88 APTAAGPGGGAER--GRPG-LCTP-------QCASLEPGPPAPSRGRPLQPRLPAELLLL 137
A AGP G E GR LC P Q +SL PG PA RP P PA+ L
Sbjct: 100 AAATAGPDGAPEESGGRASSLCGPAQRGAATQRSSLAPGLPACLYLRPAAPVRPAQSLND 159
Query: 138 LSCPA 142
L+C A
Sbjct: 160 LACAA 164
>gi|21955174 kinesin family member C2 [Homo sapiens]
Length = 838
Score = 32.0 bits (71), Expect = 1.6
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 86 QWAPTAAG-PGGGAERGRPGLCTPQCASL-EPGPPAPSRGRPL 126
+W + G PG R PG P +L PGPPAP R RPL
Sbjct: 753 EWVKWSWGQPGAAGSRAPPGRLLPSAPTLRSPGPPAPLR-RPL 794
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 31.6 bits (70), Expect = 2.0
Identities = 51/194 (26%), Positives = 67/194 (34%), Gaps = 15/194 (7%)
Query: 253 TDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCAAAPLFRAARDALHR 312
T +P EG V A ++VA + E V T +AP
Sbjct: 858 TSIAAVPAPEGTAVVAALVPFPHEDILVASIVSLEEEDV--TAAAVSAPERATVPAVTVS 915
Query: 313 LPHSTAALAALLPPEVGVP-WGLPLRDSG--------PLWAAAAVLVECGTVWGSGVAVA 363
+P TAA+AA+ PE P + G P WAA A+ V G
Sbjct: 916 VPEGTAAVAAVSSPEETAPAVAAAITQEGMSAVAGFSPEWAALAITVP--ITEEDGTPEG 973
Query: 364 PRLVVTCRHVSPREAARVLVRSTTPKSVAIWGRVVFATQETCPYDIAVVSLEEDLDD-VP 422
P T H +P E VR +TP+ A V +E AV + EE
Sbjct: 974 PVTPATTVH-APEEPDTAAVRVSTPEEPASPAAAVPTPEEPTSPAAAVPTPEEPTSPAAA 1032
Query: 423 IPVPAEHFHEGEAV 436
+P P E AV
Sbjct: 1033 VPPPEEPTSPAAAV 1046
>gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo
sapiens]
Length = 239
Score = 31.6 bits (70), Expect = 2.0
Identities = 41/154 (26%), Positives = 59/154 (38%), Gaps = 23/154 (14%)
Query: 6 GSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVI--LSRSPGLVLCHGGI---FVPFLRAG 60
G ++R+ E G + S +RA E G + V +RS L + G + + P R
Sbjct: 46 GLSLRSPEVVGRVASRARARTWEGGKEGHAAVPQPATRSGRLGVWGGPLRHSWAPRPRQA 105
Query: 61 SEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGRP----------------- 103
S+ G LPG + R R + P GG+ +P
Sbjct: 106 SQTRGGGGGPSLPGPAGRPSGRSRSRVGARGRLPSGGSHLPQPPRSLAAASAWQAVAREL 165
Query: 104 GLCTPQCASLEPGPPAPSRGRPLQPRLPAELLLL 137
GL P+ P P AP P P+ PA+L LL
Sbjct: 166 GLSGPRPTEAPPFP-APRVRAPPPPQRPAQLRLL 198
>gi|239753493 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 31.6 bits (70), Expect = 2.0
Identities = 17/40 (42%), Positives = 18/40 (45%)
Query: 92 AGPGGGAERGRPGLCTPQCASLEPGPPAPSRGRPLQPRLP 131
A P GG G PQC L PG + R R L P LP
Sbjct: 180 AQPAGGRAPGCAAPWVPQCHPLPPGQSSAERYRALCPALP 219
>gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo
sapiens]
Length = 254
Score = 31.6 bits (70), Expect = 2.0
Identities = 17/40 (42%), Positives = 18/40 (45%)
Query: 92 AGPGGGAERGRPGLCTPQCASLEPGPPAPSRGRPLQPRLP 131
A P GG G PQC L PG + R R L P LP
Sbjct: 180 AQPAGGRAPGCAAPWVPQCHPLPPGQSSAERYRALCPALP 219
>gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo
sapiens]
Length = 254
Score = 31.6 bits (70), Expect = 2.0
Identities = 17/40 (42%), Positives = 18/40 (45%)
Query: 92 AGPGGGAERGRPGLCTPQCASLEPGPPAPSRGRPLQPRLP 131
A P GG G PQC L PG + R R L P LP
Sbjct: 180 AQPAGGRAPGCAAPWVPQCHPLPPGQSSAERYRALCPALP 219
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 31.6 bits (70), Expect = 2.0
Identities = 32/128 (25%), Positives = 45/128 (35%), Gaps = 21/128 (16%)
Query: 91 AAGPGGGAERGRPGLCTPQCASLEPGPPAPSRGRPLQPRLPAELLLLLSCPAFWAHFARL 150
AAG G E G + A+ P P P P P + SC F
Sbjct: 953 AAGTKGAEETSWSG---EERAAKVPSTPPPKAAPPPPALTPDSQTVDSSCKTPEVSF--- 1006
Query: 151 FGDEAAEQWRFSSAARDDEVSEDEEADQLRALGWFALLGVRLGQEEVEEERGPAMAVSPL 210
+EA E+ A ++E E+EE ++ +EE E++ A S
Sbjct: 1007 LPEEATEEAGVRGGAEEEEEEEEEEEEE---------------EEEEEQQPATTTATSTA 1051
Query: 211 GAVPKGAP 218
A P AP
Sbjct: 1052 AAAPSTAP 1059
>gi|126723547 hypothetical protein LOC57523 [Homo sapiens]
Length = 1898
Score = 31.6 bits (70), Expect = 2.0
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 314 PHSTAALAALLPPEVGVPWGLPLR---DSGPLWAAAAVLVECGTVWGSGVAVAPR 365
P++ A+A +L V WG+P+R GP + A VLV CG G+ VA R
Sbjct: 1653 PYTHTAVAQVLLQHVFARWGVPVRLEAAQGPQF-ARHVLVSCGLALGAQVASLSR 1706
>gi|24371241 zinc finger, DHHC-type containing 14 isoform 1 [Homo
sapiens]
Length = 488
Score = 31.6 bits (70), Expect = 2.0
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 101 GRPGLCTPQCASLEPGPPAPSRGRP 125
G+PGL TP CASL GPP P P
Sbjct: 393 GKPGLGTP-CASLTLGPPTPPASMP 416
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,474,584
Number of Sequences: 37866
Number of extensions: 1393776
Number of successful extensions: 5736
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 5646
Number of HSP's gapped (non-prelim): 181
length of query: 566
length of database: 18,247,518
effective HSP length: 108
effective length of query: 458
effective length of database: 14,157,990
effective search space: 6484359420
effective search space used: 6484359420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.