Search of human proteins with 93277070

Search of human proteins with 93277070

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|93277070 RNA binding motif protein 45 [Homo sapiens]
         (474 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93277070 RNA binding motif protein 45 [Homo sapiens]               952   0.0  
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s...    82   1e-15
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]           82   1e-15
gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s...    80   4e-15
gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s...    80   5e-15
gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa...    80   5e-15
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]                      77   3e-14
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]                      77   3e-14
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]                      77   3e-14
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]                      77   3e-14
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]                      77   3e-14
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]               75   1e-13
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]               75   1e-13
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila...    75   1e-13
gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]           74   3e-13
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa...    73   6e-13
gi|209862867 poly-U binding splicing factor 60KDa isoform c [Hom...    72   1e-12
gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo...    72   1e-12
gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo...    72   1e-12
gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3 ...    70   3e-12
gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [...    70   3e-12
gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ...    70   3e-12
gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3 ...    69   7e-12
gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4...    69   1e-11
gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1 ...    69   1e-11
gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2...    69   1e-11
gi|38201714 ELAV-like 1 [Homo sapiens]                                 65   1e-10
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho...    62   9e-10
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo...    62   9e-10
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho...    62   9e-10

>gi|93277070 RNA binding motif protein 45 [Homo sapiens]
          Length = 474

 Score =  952 bits (2460), Expect = 0.0
 Identities = 474/474 (100%), Positives = 474/474 (100%)

Query: 1   MDEAGSSASGGGFRPGVDSLDEPPNSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDK 60
           MDEAGSSASGGGFRPGVDSLDEPPNSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDK
Sbjct: 1   MDEAGSSASGGGFRPGVDSLDEPPNSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDK 60

Query: 61  HTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEEL 120
           HTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEEL
Sbjct: 61  HTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEEL 120

Query: 121 TRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIEN 180
           TRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIEN
Sbjct: 121 TRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIEN 180

Query: 181 CDRSFRAILAEPKNKASESSEQDYYSNMRQEALGHEPRVNMFPFEQQSEFSSFDKNDSRG 240
           CDRSFRAILAEPKNKASESSEQDYYSNMRQEALGHEPRVNMFPFEQQSEFSSFDKNDSRG
Sbjct: 181 CDRSFRAILAEPKNKASESSEQDYYSNMRQEALGHEPRVNMFPFEQQSEFSSFDKNDSRG 240

Query: 241 QEAISKRLSVVSRVPFTEEQLFSIFDIVPGLEYCEVQRDPYSNYGHGVVQYFNVASAIYA 300
           QEAISKRLSVVSRVPFTEEQLFSIFDIVPGLEYCEVQRDPYSNYGHGVVQYFNVASAIYA
Sbjct: 241 QEAISKRLSVVSRVPFTEEQLFSIFDIVPGLEYCEVQRDPYSNYGHGVVQYFNVASAIYA 300

Query: 301 KYKLHGFQYPPGNRIGVSFIDDGSNATDLLRKMATQMVAAQLASMVWNNPSQQQFMQFGG 360
           KYKLHGFQYPPGNRIGVSFIDDGSNATDLLRKMATQMVAAQLASMVWNNPSQQQFMQFGG
Sbjct: 301 KYKLHGFQYPPGNRIGVSFIDDGSNATDLLRKMATQMVAAQLASMVWNNPSQQQFMQFGG 360

Query: 361 SSGSQLPQIQTDVVLPSCKKKAPAETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVY 420
           SSGSQLPQIQTDVVLPSCKKKAPAETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVY
Sbjct: 361 SSGSQLPQIQTDVVLPSCKKKAPAETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVY 420

Query: 421 LVSGKNVGYAKYADRISANDAIATLHGKILNGVRLKVMLADSPREESNKRQRTY 474
           LVSGKNVGYAKYADRISANDAIATLHGKILNGVRLKVMLADSPREESNKRQRTY
Sbjct: 421 LVSGKNVGYAKYADRISANDAIATLHGKILNGVRLKVMLADSPREESNKRQRTY 474


>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
           sapiens]
          Length = 448

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 59/195 (30%), Positives = 95/195 (48%), Gaps = 27/195 (13%)

Query: 2   DEAGSSASGGGFRPG----VDSLDEPPNS------------RIFL-VISKYTPESVLRER 44
           D A  S +G G  PG    ++ L   P +            ++F+  I +   E  L+  
Sbjct: 14  DNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPL 73

Query: 45  FSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIA 104
           F  FG I ++ V++D+ T   KG AF+ +     A +A   +H Q   P   +PI+V  A
Sbjct: 74  FEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPA 133

Query: 105 QSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGL 163
            S S G  R        ++FV M+ K  +E+D+R  F+ +G+IE C+I++    G SKG 
Sbjct: 134 DSESRGEDR--------KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGC 184

Query: 164 GYVRYLKPSQAAQAI 178
            +V+Y   ++A  AI
Sbjct: 185 AFVKYSSHAEAQAAI 199



 Score = 52.4 bits (124), Expect = 9e-07
 Identities = 62/270 (22%), Positives = 114/270 (42%), Gaps = 48/270 (17%)

Query: 103 IAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESK 161
           ++ S  + S   ++D +  ++F+  IP++  E+DL+  F+ +G I   +++K++ TG  K
Sbjct: 36  LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHK 95

Query: 162 GLGYVRYLKPSQAAQAIENCDRSFRAILAEPKNKASESSEQDYYSNMRQEALGHEPRVNM 221
           G  ++ Y +   A +A                   S   EQ     M +        + +
Sbjct: 96  GCAFLTYCERESALKA------------------QSALHEQKTLPGMNRP-------IQV 130

Query: 222 FPFEQQSEFSSFDKNDSRGQEAISKRLSVVSRVPFTEEQLFSIFDIVPGLEYCEVQRDPY 281
            P +          ++SRG++   K    +     +E+ +  +F+    +E C + R P 
Sbjct: 131 KPAD----------SESRGEDR--KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD 178

Query: 282 SNY-GHGVVQYFNVASAIYAKYKLHGFQYPPG--NRIGVSFIDDGSNATDLLRKMATQMV 338
            N  G   V+Y + A A  A   LHG Q  PG  + + V F D     T  +R+M  Q +
Sbjct: 179 GNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERT--MRRM--QQM 234

Query: 339 AAQLASMVWNNPSQQQFMQFGGSSGSQLPQ 368
           A Q+      NP    F  +G  + + + Q
Sbjct: 235 AGQMGMF---NPMAIPFGAYGAYAQALMQQ 261



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 18  DSLDEPPNSRIFL-VISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARS 76
           DS     + ++F+ +++K   E  +R  F  FG+I++  ++R      SKG AFVK++  
Sbjct: 134 DSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSH 192

Query: 77  SQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVE 116
           ++A  A+  +HG    P  +  + V  A +    + R ++
Sbjct: 193 AEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQ 232



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 9/102 (8%)

Query: 380 KKAPAETPVKER-LFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSG-----KNVGYAKYA 433
           K A +E+  ++R LF+         D +  +F  FGN+ E  ++ G     K   + KY+
Sbjct: 131 KPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYS 190

Query: 434 DRISANDAIATLHG-KILNGV--RLKVMLADSPREESNKRQR 472
               A  AI  LHG + + G    L V  AD+ +E + +R +
Sbjct: 191 SHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQ 232



 Score = 29.3 bits (64), Expect = 8.1
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 383 PAETPVKE----RLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNVGYAK------Y 432
           P+  P+K+    +LFI   P  L    L+ +F  FG + E+ ++  +  G  K      Y
Sbjct: 43  PSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTY 102

Query: 433 ADRISANDAIATLH-GKILNGVRLKVMLADSPREESNKRQRTY 474
            +R SA  A + LH  K L G+   + +  +  E   + ++ +
Sbjct: 103 CERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLF 145


>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
          Length = 465

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 11/167 (6%)

Query: 20  LDEPPNSRIFL-VISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
           + EP   ++F+  I ++  E  L+  F  FG I ++ V++DK+T   KG AF+ +     
Sbjct: 1   MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60

Query: 79  ACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLR 137
           A +A   +H Q   P   +PI+V  A S S G  R        ++FV M+ K  T+ED+R
Sbjct: 61  ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDR--------KLFVGMLGKQQTDEDVR 112

Query: 138 EKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRS 184
           + F+ +G I+ C++++    G SKG  +V++   ++A  AI     S
Sbjct: 113 KMFEPFGTIDECTVLRGP-DGTSKGCAFVKFQTHAEAQAAINTLHSS 158



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 2/100 (2%)

Query: 18  DSLDEPPNSRIFL-VISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARS 76
           DS     + ++F+ ++ K   +  +R+ F PFG I +  V+R      SKG AFVKF   
Sbjct: 87  DSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGT-SKGCAFVKFQTH 145

Query: 77  SQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVE 116
           ++A  A+  +H     P  +  + V  A +      R ++
Sbjct: 146 AEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQ 185



 Score = 35.8 bits (81), Expect = 0.087
 Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 105 QSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGL 163
           Q +     +  E  +   IF+  +P+ +T+ ++ + F  +G +    +  ++ T +SK  
Sbjct: 364 QQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCF 423

Query: 164 GYVRYLKPSQAAQAIE 179
           G+V +  P+ A  AI+
Sbjct: 424 GFVSFDNPASAQAAIQ 439



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 25  NSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAME 84
           N  I+ +  ++T   +L + F PFG +    V  D+ T +SK   FV F   + A  A++
Sbjct: 381 NIFIYHLPQEFTDSEIL-QMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQ 439

Query: 85  EMHGQCLG 92
            M+G  +G
Sbjct: 440 AMNGFQIG 447


>gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo
           sapiens]
          Length = 484

 Score = 80.1 bits (196), Expect = 4e-15
 Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 20/196 (10%)

Query: 2   DEAGSSASGGGFRPG----VDSLDEPPNS------------RIFL-VISKYTPESVLRER 44
           D A  S +G G  PG    ++ L   P +            ++F+  I +   E  L+  
Sbjct: 14  DNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPL 73

Query: 45  FSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIA 104
           F  FG I ++ V++D+ T   KG AF+ +     A +A   +H Q   P   +PI+V  A
Sbjct: 74  FEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPA 133

Query: 105 QSRSSGSHRDVEDEELTR-IFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKG 162
            S S G    +      R +FV M+ K  +E+D+R  F+ +G+IE C+I++    G SKG
Sbjct: 134 DSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKG 192

Query: 163 LGYVRYLKPSQAAQAI 178
             +V+Y   ++A  AI
Sbjct: 193 CAFVKYSSHAEAQAAI 208



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 61/263 (23%), Positives = 112/263 (42%), Gaps = 43/263 (16%)

Query: 103 IAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESK 161
           ++ S  + S   ++D +  ++F+  IP++  E+DL+  F+ +G I   +++K++ TG  K
Sbjct: 36  LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHK 95

Query: 162 GLGYVRYLKPSQA--AQAIENCDRSFRAILAEPKNKASESSEQDYYSNMRQEALGHEPRV 219
           G  ++ Y +   A  AQ+  +  ++   +    + K ++S  +   S +RQ     +  V
Sbjct: 96  GCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLFV 155

Query: 220 NMFPFEQQSEFSSFDKNDSRGQEAISKRLSVVSRVPFTEEQLFSIFDIVPGLEYCEVQRD 279
            M   +Q                              +E+ +  +F+    +E C + R 
Sbjct: 156 GMLNKQQ------------------------------SEDDVRRLFEAFGNIEECTILRG 185

Query: 280 PYSNY-GHGVVQYFNVASAIYAKYKLHGFQYPPG--NRIGVSFIDDGSNATDLLRKMATQ 336
           P  N  G   V+Y + A A  A   LHG Q  PG  + + V F D     T  +R+M  Q
Sbjct: 186 PDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERT--MRRM--Q 241

Query: 337 MVAAQLASMVWNNPSQQQFMQFG 359
            +A Q+      NP    F  +G
Sbjct: 242 QMAGQMGMF---NPMAIPFGAYG 261



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 14  RPGVDSLDEPPNSRIFLV--ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFV 71
           R G   L +PP+ R   V  ++K   E  +R  F  FG+I++  ++R      SKG AFV
Sbjct: 138 RGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFV 196

Query: 72  KFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVE 116
           K++  ++A  A+  +HG    P  +  + V  A +    + R ++
Sbjct: 197 KYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQ 241



 Score = 33.5 bits (75), Expect = 0.43
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 12/104 (11%)

Query: 377 SCKKKAPAETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSG-----KNVGYAK 431
           SC ++ P+      +LF+         D +  +F  FGN+ E  ++ G     K   + K
Sbjct: 142 SCLRQPPSH----RKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVK 197

Query: 432 YADRISANDAIATLHG-KILNGV--RLKVMLADSPREESNKRQR 472
           Y+    A  AI  LHG + + G    L V  AD+ +E + +R +
Sbjct: 198 YSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQ 241


>gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo
           sapiens]
          Length = 485

 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 21/197 (10%)

Query: 2   DEAGSSASGGGFRPG----VDSLDEPPNS------------RIFL-VISKYTPESVLRER 44
           D A  S +G G  PG    ++ L   P +            ++F+  I +   E  L+  
Sbjct: 14  DNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPL 73

Query: 45  FSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIA 104
           F  FG I ++ V++D+ T   KG AF+ +     A +A   +H Q   P   +PI+V  A
Sbjct: 74  FEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPA 133

Query: 105 QSRSSGSH---RDVEDEELTRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESK 161
            S S G     R    ++      M+ K  +E+D+R  F+ +G+IE C+I++    G SK
Sbjct: 134 DSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSK 192

Query: 162 GLGYVRYLKPSQAAQAI 178
           G  +V+Y   ++A  AI
Sbjct: 193 GCAFVKYSSHAEAQAAI 209



 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 42/263 (15%)

Query: 103 IAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESK 161
           ++ S  + S   ++D +  ++F+  IP++  E+DL+  F+ +G I   +++K++ TG  K
Sbjct: 36  LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHK 95

Query: 162 GLGYVRYLKPSQA--AQAIENCDRSFRAILAEPKNKASESSEQDYYSNMRQEALGHEPRV 219
           G  ++ Y +   A  AQ+  +  ++   +    + K ++S  +   S +RQ         
Sbjct: 96  GCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQP-------- 147

Query: 220 NMFPFEQQSEFSSFDKNDSRGQEAISKRLSVVSRVPFTEEQLFSIFDIVPGLEYCEVQRD 279
              P + +  F             ++K+ S        E+ +  +F+    +E C + R 
Sbjct: 148 ---PSQDRKLFVGM----------LNKQQS--------EDDVRRLFEAFGNIEECTILRG 186

Query: 280 PYSNY-GHGVVQYFNVASAIYAKYKLHGFQYPPG--NRIGVSFIDDGSNATDLLRKMATQ 336
           P  N  G   V+Y + A A  A   LHG Q  PG  + + V F D     T  +R+M  Q
Sbjct: 187 PDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERT--MRRM--Q 242

Query: 337 MVAAQLASMVWNNPSQQQFMQFG 359
            +A Q+      NP    F  +G
Sbjct: 243 QMAGQMGMF---NPMAIPFGAYG 262



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 14  RPGVDSLDEPPNS--RIFL-VISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAF 70
           R G   L +PP+   ++F+ +++K   E  +R  F  FG+I++  ++R      SKG AF
Sbjct: 138 RGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAF 196

Query: 71  VKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVE 116
           VK++  ++A  A+  +HG    P  +  + V  A +    + R ++
Sbjct: 197 VKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQ 242



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 11/104 (10%)

Query: 377 SCKKKAPAETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSG-----KNVGYAK 431
           SC ++ P++     +LF+         D +  +F  FGN+ E  ++ G     K   + K
Sbjct: 142 SCLRQPPSQD---RKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVK 198

Query: 432 YADRISANDAIATLHG-KILNGV--RLKVMLADSPREESNKRQR 472
           Y+    A  AI  LHG + + G    L V  AD+ +E + +R +
Sbjct: 199 YSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQ 242


>gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo
           sapiens]
          Length = 486

 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 21/197 (10%)

Query: 2   DEAGSSASGGGFRPG----VDSLDEPPNS------------RIFL-VISKYTPESVLRER 44
           D A  S +G G  PG    ++ L   P +            ++F+  I +   E  L+  
Sbjct: 14  DNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPL 73

Query: 45  FSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIA 104
           F  FG I ++ V++D+ T   KG AF+ +     A +A   +H Q   P   +PI+V  A
Sbjct: 74  FEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPA 133

Query: 105 QSRSSGSH---RDVEDEELTRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESK 161
            S S G     R    ++      M+ K  +E+D+R  F+ +G+IE C+I++    G SK
Sbjct: 134 DSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSK 192

Query: 162 GLGYVRYLKPSQAAQAI 178
           G  +V+Y   ++A  AI
Sbjct: 193 GCAFVKYSSHAEAQAAI 209



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 63/272 (23%), Positives = 119/272 (43%), Gaps = 42/272 (15%)

Query: 103 IAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESK 161
           ++ S  + S   ++D +  ++F+  IP++  E+DL+  F+ +G I   +++K++ TG  K
Sbjct: 36  LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHK 95

Query: 162 GLGYVRYLKPSQA--AQAIENCDRSFRAILAEPKNKASESSEQDYYSNMRQEALGHEPRV 219
           G  ++ Y +   A  AQ+  +  ++   +    + K ++S  +   S +RQ         
Sbjct: 96  GCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQP-------- 147

Query: 220 NMFPFEQQSEFSSFDKNDSRGQEAISKRLSVVSRVPFTEEQLFSIFDIVPGLEYCEVQRD 279
              P + +  F             ++K+ S        E+ +  +F+    +E C + R 
Sbjct: 148 ---PSQDRKLFVGM----------LNKQQS--------EDDVRRLFEAFGNIEECTILRG 186

Query: 280 PYSNY-GHGVVQYFNVASAIYAKYKLHGFQYPPG--NRIGVSFIDDGSNATDLLRKMATQ 336
           P  N  G   V+Y + A A  A   LHG Q  PG  + + V F D     T  +R+M  Q
Sbjct: 187 PDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERT--MRRM--Q 242

Query: 337 MVAAQLASMVWNNPSQQQFMQFGGSSGSQLPQ 368
            +A Q+      NP    F  +G  + + + Q
Sbjct: 243 QMAGQMGMF---NPMAIPFGAYGAYAQALMQQ 271



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 14  RPGVDSLDEPPNS--RIFL-VISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAF 70
           R G   L +PP+   ++F+ +++K   E  +R  F  FG+I++  ++R      SKG AF
Sbjct: 138 RGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAF 196

Query: 71  VKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVE 116
           VK++  ++A  A+  +HG    P  +  + V  A +    + R ++
Sbjct: 197 VKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQ 242



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 11/104 (10%)

Query: 377 SCKKKAPAETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSG-----KNVGYAK 431
           SC ++ P++     +LF+         D +  +F  FGN+ E  ++ G     K   + K
Sbjct: 142 SCLRQPPSQD---RKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVK 198

Query: 432 YADRISANDAIATLHG-KILNGV--RLKVMLADSPREESNKRQR 472
           Y+    A  AI  LHG + + G    L V  AD+ +E + +R +
Sbjct: 199 YSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQ 242


>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
          Length = 380

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 20/190 (10%)

Query: 31  VISKYTPESVLRERF----SPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEM 86
           +I  Y P+++ +E F       G+I+   +VRDK T +S G  FV +     A +A+  +
Sbjct: 48  LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107

Query: 87  HGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGD 145
           +G  L    TK IKV  A+  SS S RD        ++V  +PK+ T+++L + F  YG 
Sbjct: 108 NGLRL---QTKTIKVSYARP-SSASIRDAN------LYVSGLPKTMTQKELEQLFSQYGR 157

Query: 146 IEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRAILAEP-----KNKASESS 200
           I    I+ ++VTG S+G+G++R+ K  +A +AI+  +    +   EP      N  S+ S
Sbjct: 158 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKS 217

Query: 201 EQDYYSNMRQ 210
            Q   S + Q
Sbjct: 218 SQALLSQLYQ 227



 Score = 55.8 bits (133), Expect = 8e-08
 Identities = 23/63 (36%), Positives = 40/63 (63%)

Query: 116 EDEELTRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAA 175
           +D +   I   +P++ T+E+ R  F   G+IE C ++++K+TG+S G G+V Y+ P  A 
Sbjct: 42  DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101

Query: 176 QAI 178
           +AI
Sbjct: 102 KAI 104



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 32  ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
           +S  + ESVL + F PFG + ++ V+RD +T + KG  FV      +A  A+  ++G  L
Sbjct: 304 LSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRL 363

Query: 92  G 92
           G
Sbjct: 364 G 364



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 11/111 (9%)

Query: 368 QIQTDVVLPSCKKKAPAETPVKE-RLFIVFNPHPLPLDVLEDIFCRFGNLIE----VYLV 422
           ++QT  +  S  +  P+   +++  L++   P  +    LE +F ++G +I     V  V
Sbjct: 111 RLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 168

Query: 423 SG--KNVGYAKYADRISANDAIATLHGKILNGVR--LKVMLADSPREESNK 469
           +G  + VG+ ++  RI A +AI  L+G+  +G    + V  A++P ++S++
Sbjct: 169 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219



 Score = 29.6 bits (65), Expect = 6.2
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 245 SKRLSVVSRVP--FTEEQLFSIFDIVPGLEYCEVQRDPYS--NYGHGVVQYFNVASAIYA 300
           SK   +V+ +P   T+E+  S+F  +  +E C++ RD  +  + G+G V Y +   A  A
Sbjct: 44  SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103

Query: 301 KYKLHGFQ 308
              L+G +
Sbjct: 104 INTLNGLR 111


>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
          Length = 369

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 20/190 (10%)

Query: 31  VISKYTPESVLRERF----SPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEM 86
           +I  Y P+++ +E F       G+I+   +VRDK T +S G  FV +     A +A+  +
Sbjct: 51  LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 110

Query: 87  HGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGD 145
           +G  L    TK IKV  A+  SS S RD        ++V  +PK+ T+++L + F  YG 
Sbjct: 111 NGLRL---QTKTIKVSYARP-SSASIRDAN------LYVSGLPKTMTQKELEQLFSQYGR 160

Query: 146 IEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRAILAEP-----KNKASESS 200
           I    I+ ++VTG S+G+G++R+ K  +A +AI+  +    +   EP      N  S+ S
Sbjct: 161 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKS 220

Query: 201 EQDYYSNMRQ 210
            Q   S + Q
Sbjct: 221 SQALLSQLYQ 230



 Score = 55.8 bits (133), Expect = 8e-08
 Identities = 23/63 (36%), Positives = 40/63 (63%)

Query: 116 EDEELTRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAA 175
           +D +   I   +P++ T+E+ R  F   G+IE C ++++K+TG+S G G+V Y+ P  A 
Sbjct: 45  DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 104

Query: 176 QAI 178
           +AI
Sbjct: 105 KAI 107



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 32  ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
           +S  + ESVL + F PFG + ++ V+RD +T + KG  FV      +A  A+  ++G  L
Sbjct: 293 LSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRL 352

Query: 92  G 92
           G
Sbjct: 353 G 353



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 11/111 (9%)

Query: 368 QIQTDVVLPSCKKKAPAETPVKE-RLFIVFNPHPLPLDVLEDIFCRFGNLIE----VYLV 422
           ++QT  +  S  +  P+   +++  L++   P  +    LE +F ++G +I     V  V
Sbjct: 114 RLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 171

Query: 423 SG--KNVGYAKYADRISANDAIATLHGKILNGVR--LKVMLADSPREESNK 469
           +G  + VG+ ++  RI A +AI  L+G+  +G    + V  A++P ++S++
Sbjct: 172 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 222



 Score = 29.6 bits (65), Expect = 6.2
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 245 SKRLSVVSRVP--FTEEQLFSIFDIVPGLEYCEVQRDPYS--NYGHGVVQYFNVASAIYA 300
           SK   +V+ +P   T+E+  S+F  +  +E C++ RD  +  + G+G V Y +   A  A
Sbjct: 47  SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 106

Query: 301 KYKLHGFQ 308
              L+G +
Sbjct: 107 INTLNGLR 114


>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
          Length = 366

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 20/190 (10%)

Query: 31  VISKYTPESVLRERF----SPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEM 86
           +I  Y P+++ +E F       G+I+   +VRDK T +S G  FV +     A +A+  +
Sbjct: 48  LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107

Query: 87  HGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGD 145
           +G  L    TK IKV  A+  SS S RD        ++V  +PK+ T+++L + F  YG 
Sbjct: 108 NGLRL---QTKTIKVSYARP-SSASIRDAN------LYVSGLPKTMTQKELEQLFSQYGR 157

Query: 146 IEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRAILAEP-----KNKASESS 200
           I    I+ ++VTG S+G+G++R+ K  +A +AI+  +    +   EP      N  S+ S
Sbjct: 158 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKS 217

Query: 201 EQDYYSNMRQ 210
            Q   S + Q
Sbjct: 218 SQALLSQLYQ 227



 Score = 55.8 bits (133), Expect = 8e-08
 Identities = 23/63 (36%), Positives = 40/63 (63%)

Query: 116 EDEELTRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAA 175
           +D +   I   +P++ T+E+ R  F   G+IE C ++++K+TG+S G G+V Y+ P  A 
Sbjct: 42  DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101

Query: 176 QAI 178
           +AI
Sbjct: 102 KAI 104



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 32  ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
           +S  + ESVL + F PFG + ++ V+RD +T + KG  FV      +A  A+  ++G  L
Sbjct: 290 LSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRL 349

Query: 92  G 92
           G
Sbjct: 350 G 350



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 11/111 (9%)

Query: 368 QIQTDVVLPSCKKKAPAETPVKE-RLFIVFNPHPLPLDVLEDIFCRFGNLIE----VYLV 422
           ++QT  +  S  +  P+   +++  L++   P  +    LE +F ++G +I     V  V
Sbjct: 111 RLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 168

Query: 423 SG--KNVGYAKYADRISANDAIATLHGKILNGVR--LKVMLADSPREESNK 469
           +G  + VG+ ++  RI A +AI  L+G+  +G    + V  A++P ++S++
Sbjct: 169 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219



 Score = 29.6 bits (65), Expect = 6.2
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 245 SKRLSVVSRVP--FTEEQLFSIFDIVPGLEYCEVQRDPYS--NYGHGVVQYFNVASAIYA 300
           SK   +V+ +P   T+E+  S+F  +  +E C++ RD  +  + G+G V Y +   A  A
Sbjct: 44  SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103

Query: 301 KYKLHGFQ 308
              L+G +
Sbjct: 104 INTLNGLR 111


>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
          Length = 383

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 20/190 (10%)

Query: 31  VISKYTPESVLRERF----SPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEM 86
           +I  Y P+++ +E F       G+I+   +VRDK T +S G  FV +     A +A+  +
Sbjct: 65  LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 124

Query: 87  HGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGD 145
           +G  L    TK IKV  A+  SS S RD        ++V  +PK+ T+++L + F  YG 
Sbjct: 125 NGLRL---QTKTIKVSYARP-SSASIRDAN------LYVSGLPKTMTQKELEQLFSQYGR 174

Query: 146 IEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRAILAEP-----KNKASESS 200
           I    I+ ++VTG S+G+G++R+ K  +A +AI+  +    +   EP      N  S+ S
Sbjct: 175 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKS 234

Query: 201 EQDYYSNMRQ 210
            Q   S + Q
Sbjct: 235 SQALLSQLYQ 244



 Score = 55.8 bits (133), Expect = 8e-08
 Identities = 23/63 (36%), Positives = 40/63 (63%)

Query: 116 EDEELTRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAA 175
           +D +   I   +P++ T+E+ R  F   G+IE C ++++K+TG+S G G+V Y+ P  A 
Sbjct: 59  DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 118

Query: 176 QAI 178
           +AI
Sbjct: 119 KAI 121



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 32  ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
           +S  + ESVL + F PFG + ++ V+RD +T + KG  FV      +A  A+  ++G  L
Sbjct: 307 LSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRL 366

Query: 92  G 92
           G
Sbjct: 367 G 367



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 11/111 (9%)

Query: 368 QIQTDVVLPSCKKKAPAETPVKE-RLFIVFNPHPLPLDVLEDIFCRFGNLIE----VYLV 422
           ++QT  +  S  +  P+   +++  L++   P  +    LE +F ++G +I     V  V
Sbjct: 128 RLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 185

Query: 423 SG--KNVGYAKYADRISANDAIATLHGKILNGVR--LKVMLADSPREESNK 469
           +G  + VG+ ++  RI A +AI  L+G+  +G    + V  A++P ++S++
Sbjct: 186 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 236



 Score = 29.6 bits (65), Expect = 6.2
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 245 SKRLSVVSRVP--FTEEQLFSIFDIVPGLEYCEVQRDPYS--NYGHGVVQYFNVASAIYA 300
           SK   +V+ +P   T+E+  S+F  +  +E C++ RD  +  + G+G V Y +   A  A
Sbjct: 61  SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 120

Query: 301 KYKLHGFQ 308
              L+G +
Sbjct: 121 INTLNGLR 128


>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
          Length = 366

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 20/190 (10%)

Query: 31  VISKYTPESVLRERF----SPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEM 86
           +I  Y P+++ +E F       G+I+   +VRDK T +S G  FV +     A +A+  +
Sbjct: 48  LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107

Query: 87  HGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGD 145
           +G  L    TK IKV  A+  SS S RD        ++V  +PK+ T+++L + F  YG 
Sbjct: 108 NGLRL---QTKTIKVSYARP-SSASIRDAN------LYVSGLPKTMTQKELEQLFSQYGR 157

Query: 146 IEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRAILAEP-----KNKASESS 200
           I    I+ ++VTG S+G+G++R+ K  +A +AI+  +    +   EP      N  S+ S
Sbjct: 158 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKS 217

Query: 201 EQDYYSNMRQ 210
            Q   S + Q
Sbjct: 218 SQALLSQLYQ 227



 Score = 55.8 bits (133), Expect = 8e-08
 Identities = 23/63 (36%), Positives = 40/63 (63%)

Query: 116 EDEELTRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAA 175
           +D +   I   +P++ T+E+ R  F   G+IE C ++++K+TG+S G G+V Y+ P  A 
Sbjct: 42  DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101

Query: 176 QAI 178
           +AI
Sbjct: 102 KAI 104



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 32  ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
           +S  + ESVL + F PFG + ++ V+RD +T + KG  FV      +A  A+  ++G  L
Sbjct: 290 LSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRL 349

Query: 92  G 92
           G
Sbjct: 350 G 350



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 11/111 (9%)

Query: 368 QIQTDVVLPSCKKKAPAETPVKE-RLFIVFNPHPLPLDVLEDIFCRFGNLIE----VYLV 422
           ++QT  +  S  +  P+   +++  L++   P  +    LE +F ++G +I     V  V
Sbjct: 111 RLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 168

Query: 423 SG--KNVGYAKYADRISANDAIATLHGKILNGVR--LKVMLADSPREESNK 469
           +G  + VG+ ++  RI A +AI  L+G+  +G    + V  A++P ++S++
Sbjct: 169 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219



 Score = 29.6 bits (65), Expect = 6.2
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 245 SKRLSVVSRVP--FTEEQLFSIFDIVPGLEYCEVQRDPYS--NYGHGVVQYFNVASAIYA 300
           SK   +V+ +P   T+E+  S+F  +  +E C++ RD  +  + G+G V Y +   A  A
Sbjct: 44  SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103

Query: 301 KYKLHGFQ 308
              L+G +
Sbjct: 104 INTLNGLR 111


>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
          Length = 367

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 57/192 (29%), Positives = 102/192 (53%), Gaps = 20/192 (10%)

Query: 31  VISKYTPESVLRERFSPF----GDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEM 86
           +I  Y P+++ ++ F       GDI+   +VRDK T +S G  FV ++  + A +A+  +
Sbjct: 41  LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100

Query: 87  HGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGD 145
           +G  L    TK IKV  A+  SS S RD        ++V  +PK+ +++++ + F  YG 
Sbjct: 101 NGLKL---QTKTIKVSYARP-SSASIRD------ANLYVSGLPKTMSQKEMEQLFSQYGR 150

Query: 146 IEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRAILAEP-----KNKASESS 200
           I    I+ ++VTG S+G+G++R+ K  +A +AI+  +       AEP      N  S+ +
Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT 210

Query: 201 EQDYYSNMRQEA 212
            Q   +++ Q +
Sbjct: 211 GQALLTHLYQSS 222



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 23/69 (33%), Positives = 43/69 (62%)

Query: 110 GSHRDVEDEELTRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYL 169
           G++   +D +   I   +P++ T+++ +  F   GDIE C ++++K+TG+S G G+V Y 
Sbjct: 29  GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88

Query: 170 KPSQAAQAI 178
            P+ A +AI
Sbjct: 89  DPNDADKAI 97



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 32  ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
           +S    ESVL + F PFG + ++ V+RD  T + KG  FV      +A  A+  ++G  L
Sbjct: 291 LSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRL 350

Query: 92  G 92
           G
Sbjct: 351 G 351



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 27/116 (23%), Positives = 59/116 (50%), Gaps = 11/116 (9%)

Query: 368 QIQTDVVLPSCKKKAPAETPVKE-RLFIVFNPHPLPLDVLEDIFCRFGNLIE----VYLV 422
           ++QT  +  S  +  P+   +++  L++   P  +    +E +F ++G +I     V  V
Sbjct: 104 KLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 161

Query: 423 SG--KNVGYAKYADRISANDAIATLHGKILNGVR--LKVMLADSPREESNKRQRTY 474
           +G  + VG+ ++  RI A +AI  L+G+   G    + V  A++P +++ +   T+
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTH 217



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 389 KERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLV----SGKNVGYA--KYADRISANDAI 442
           K  L + + P  +  D  + +F   G++    LV    +G+++GY    Y+D   A+ AI
Sbjct: 38  KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97

Query: 443 ATLHGKILNGVRLKVMLA 460
            TL+G  L    +KV  A
Sbjct: 98  NTLNGLKLQTKTIKVSYA 115


>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
          Length = 360

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 57/192 (29%), Positives = 102/192 (53%), Gaps = 20/192 (10%)

Query: 31  VISKYTPESVLRERFSPF----GDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEM 86
           +I  Y P+++ ++ F       GDI+   +VRDK T +S G  FV ++  + A +A+  +
Sbjct: 41  LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100

Query: 87  HGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGD 145
           +G  L    TK IKV  A+  SS S RD        ++V  +PK+ +++++ + F  YG 
Sbjct: 101 NGLKL---QTKTIKVSYARP-SSASIRD------ANLYVSGLPKTMSQKEMEQLFSQYGR 150

Query: 146 IEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRAILAEP-----KNKASESS 200
           I    I+ ++VTG S+G+G++R+ K  +A +AI+  +       AEP      N  S+ +
Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT 210

Query: 201 EQDYYSNMRQEA 212
            Q   +++ Q +
Sbjct: 211 GQALLTHLYQSS 222



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 23/69 (33%), Positives = 43/69 (62%)

Query: 110 GSHRDVEDEELTRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYL 169
           G++   +D +   I   +P++ T+++ +  F   GDIE C ++++K+TG+S G G+V Y 
Sbjct: 29  GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88

Query: 170 KPSQAAQAI 178
            P+ A +AI
Sbjct: 89  DPNDADKAI 97



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 32  ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
           +S    ESVL + F PFG + ++ V+RD  T + KG  FV      +A  A+  ++G  L
Sbjct: 284 LSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRL 343

Query: 92  G 92
           G
Sbjct: 344 G 344



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 27/116 (23%), Positives = 59/116 (50%), Gaps = 11/116 (9%)

Query: 368 QIQTDVVLPSCKKKAPAETPVKE-RLFIVFNPHPLPLDVLEDIFCRFGNLIE----VYLV 422
           ++QT  +  S  +  P+   +++  L++   P  +    +E +F ++G +I     V  V
Sbjct: 104 KLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 161

Query: 423 SG--KNVGYAKYADRISANDAIATLHGKILNGVR--LKVMLADSPREESNKRQRTY 474
           +G  + VG+ ++  RI A +AI  L+G+   G    + V  A++P +++ +   T+
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTH 217



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 389 KERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLV----SGKNVGYA--KYADRISANDAI 442
           K  L + + P  +  D  + +F   G++    LV    +G+++GY    Y+D   A+ AI
Sbjct: 38  KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97

Query: 443 ATLHGKILNGVRLKVMLA 460
            TL+G  L    +KV  A
Sbjct: 98  NTLNGLKLQTKTIKVSYA 115


>gi|115511032 ELAV (embryonic lethal, abnormal vision,
           Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
          Length = 359

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 24/209 (11%)

Query: 31  VISKYTPESVLRER----FSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEM 86
           +I  Y P+++ +E     F   G+I+   +VRDK T +S G  FV +     A +A+  +
Sbjct: 41  LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100

Query: 87  HGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGD 145
           +G  L    TK IKV  A+  SS S RD        ++V  +PK+ T+++L + F  YG 
Sbjct: 101 NGLRL---QTKTIKVSYARP-SSASIRDAN------LYVSGLPKTMTQKELEQLFSQYGR 150

Query: 146 IEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRAILAEP-----KNKASESS 200
           I    I+ ++VTG S+G+G++R+ K  +A +AI+  +        EP      N  S+ +
Sbjct: 151 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 210

Query: 201 EQDYYSNMRQEALGHEPRVNMFPFEQQSE 229
            Q   S + Q      P     P  QQ++
Sbjct: 211 NQAILSQLYQSPNRRYPG----PLAQQAQ 235



 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 24/65 (36%), Positives = 42/65 (64%)

Query: 114 DVEDEELTRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQ 173
           + ED +   I   +P++ T+E+L+  F   G+IE C ++++K+TG+S G G+V Y+ P  
Sbjct: 33  NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92

Query: 174 AAQAI 178
           A +AI
Sbjct: 93  AEKAI 97



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 38  ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLG 92
           ES+L + F PFG + ++ V+RD +T + KG  FV      +A  A+  ++G  LG
Sbjct: 289 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG 343



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 28/111 (25%), Positives = 58/111 (52%), Gaps = 11/111 (9%)

Query: 368 QIQTDVVLPSCKKKAPAETPVKE-RLFIVFNPHPLPLDVLEDIFCRFGNLIE----VYLV 422
           ++QT  +  S  +  P+   +++  L++   P  +    LE +F ++G +I     V  V
Sbjct: 104 RLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 161

Query: 423 SG--KNVGYAKYADRISANDAIATLHGKILNGVR--LKVMLADSPREESNK 469
           +G  + VG+ ++  RI A +AI  L+G+   G    + V  A++P +++N+
Sbjct: 162 TGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 212



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 240 GQEAISKRLSVVSRVP--FTEEQLFSIFDIVPGLEYCEVQRDPYS--NYGHGVVQYFNVA 295
           G    SK   +V+ +P   T+E+L S+F  +  +E C++ RD  +  + G+G V Y +  
Sbjct: 32  GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91

Query: 296 SAIYAKYKLHGFQ 308
            A  A   L+G +
Sbjct: 92  DAEKAINTLNGLR 104



 Score = 29.6 bits (65), Expect = 6.2
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 389 KERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLV----SGKNVGYA--KYADRISANDAI 442
           K  L + + P  +  + L+ +F   G +    LV    +G+++GY    Y D   A  AI
Sbjct: 38  KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97

Query: 443 ATLHGKILNGVRLKVMLA 460
            TL+G  L    +KV  A
Sbjct: 98  NTLNGLRLQTKTIKVSYA 115


>gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]
          Length = 481

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 13/216 (6%)

Query: 3   EAGSSASGGGFRPGVDSLDEPPNSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDKHT 62
           ++G   SG    P V   D          I +   E  L+  F  FG I ++ V++D+ T
Sbjct: 24  DSGVGMSGLNPGPAVPMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLT 83

Query: 63  KESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTR 122
              KG AF+ +     A +A   +H Q   P   +PI+V  A S   G  R        +
Sbjct: 84  GLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGRGEDR--------K 135

Query: 123 IFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENC 181
           +FV M+ K   EED+R  F+ +G IE C+++++   G SKG  +V++    +A  AI   
Sbjct: 136 LFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSP-DGTSKGCAFVKFGSQGEAQAAIRGL 194

Query: 182 DRSFRAILAEPKNKASESSEQDYYSNMR--QEALGH 215
             S R +     +   + ++ D    +R  Q+  GH
Sbjct: 195 HGS-RTMAGASSSLVVKLADTDRERALRRMQQMAGH 229



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 93  PNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSI 151
           P+   P+     Q  S+   +  E  E   +F+  +P+ + + +L + F  +G +    +
Sbjct: 368 PSAYAPVSTAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKV 427

Query: 152 IKNKVTGESKGLGYVRYLKPSQAAQAIE 179
             ++ T +SK  G+V +  P+ A  AI+
Sbjct: 428 FVDRATNQSKCFGFVSFDNPTSAQTAIQ 455



 Score = 33.1 bits (74), Expect = 0.56
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 38  ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLG 92
           ++ L + F PFG +    V  D+ T +SK   FV F   + A  A++ M+G  +G
Sbjct: 409 DAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIG 463


>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
           sapiens]
          Length = 485

 Score = 72.8 bits (177), Expect = 6e-13
 Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 13/170 (7%)

Query: 11  GGFRPGVDSLDEPPNSRIFL-VISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIA 69
           GG   G+  LD     ++F+  I ++  E  L+  F  FG I ++ V++D +T   KG A
Sbjct: 33  GGQPDGMKDLDA---IKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCA 89

Query: 70  FVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-MIP 128
           F+ +     A +A   +H Q   P   +PI+V  A S S G  RD       ++FV M+ 
Sbjct: 90  FLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGG-RD------RKLFVGMLN 142

Query: 129 KSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178
           K  +EED+   F+ +G I+ C++++    G SKG  +V++   ++A  AI
Sbjct: 143 KQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAI 191



 Score = 38.5 bits (88), Expect = 0.013
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 31  VISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQC 90
           +++K   E  +   F PFG I +  V+R      SKG AFVKF+  ++A  A+  +HG  
Sbjct: 140 MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS-SKGCAFVKFSSHTEAQAAIHALHGSQ 198

Query: 91  LGPNDTKPIKVFIAQS 106
             P  +  + V  A +
Sbjct: 199 TMPGASSSLVVKFADT 214



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 38  ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTK 97
           ++ L + F PFG+I    V  D+ T +SK   FV F   + A  A++ M+G  +G    K
Sbjct: 413 DTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIG---MK 469

Query: 98  PIKVFIAQSRSSG 110
            +KV + + +  G
Sbjct: 470 RLKVQLKRPKDPG 482



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 116 EDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQA 174
           E  E   +F+  +P+ + + +L + F  +G+I    +  ++ T +SK  G+V +  P+ A
Sbjct: 395 EGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASA 454

Query: 175 AQAIE 179
             AI+
Sbjct: 455 QAAIQ 459



 Score = 30.0 bits (66), Expect = 4.8
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 376 PSCKKKAPAETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLI--EVYLVSGKN----VGY 429
           P   ++   E P    LFI   P       L  +F  FGN+I  +V++    N     G+
Sbjct: 386 PPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGF 445

Query: 430 AKYADRISANDAIATLHGKILNGVRLKVML 459
             + +  SA  AI  ++G  +   RLKV L
Sbjct: 446 VSFDNPASAQAAIQAMNGFQIGMKRLKVQL 475


>gi|209862867 poly-U binding splicing factor 60KDa isoform c [Homo
           sapiens]
          Length = 516

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 2/145 (1%)

Query: 38  ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTK 97
           E  +R+ F+PFG I+ I +  D  T + KG AFV++     A  A+E+M+   LG  + K
Sbjct: 99  EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 158

Query: 98  PIKVF-IAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNK 155
             +   I Q++        E     RI+V  + +  +++D++  F+ +G I+ C++ ++ 
Sbjct: 159 VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 218

Query: 156 VTGESKGLGYVRYLKPSQAAQAIEN 180
            TG+ KG G++ Y K   +  A+ +
Sbjct: 219 TTGKHKGYGFIEYEKAQSSQDAVSS 243



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 3   EAGSSASGGGFRPGVDSLDEPPNS--RIFLV-ISKYTPESVLRERFSPFGDIQDIWVVRD 59
           + G  ++ G  +P +D L E   +  RI++  + +   +  ++  F  FG I+   + RD
Sbjct: 158 KVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARD 217

Query: 60  KHTKESKGIAFVKFARSSQACRAMEEMH 87
             T + KG  F+++ ++  +  A+  M+
Sbjct: 218 PTTGKHKGYGFIEYEKAQSSQDAVSSMN 245


>gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo
           sapiens]
          Length = 542

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 2/145 (1%)

Query: 38  ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTK 97
           E  +R+ F+PFG I+ I +  D  T + KG AFV++     A  A+E+M+   LG  + K
Sbjct: 125 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 184

Query: 98  PIKVF-IAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNK 155
             +   I Q++        E     RI+V  + +  +++D++  F+ +G I+ C++ ++ 
Sbjct: 185 VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 244

Query: 156 VTGESKGLGYVRYLKPSQAAQAIEN 180
            TG+ KG G++ Y K   +  A+ +
Sbjct: 245 TTGKHKGYGFIEYEKAQSSQDAVSS 269



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 3   EAGSSASGGGFRPGVDSLDEPPNS--RIFLV-ISKYTPESVLRERFSPFGDIQDIWVVRD 59
           + G  ++ G  +P +D L E   +  RI++  + +   +  ++  F  FG I+   + RD
Sbjct: 184 KVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARD 243

Query: 60  KHTKESKGIAFVKFARSSQACRAMEEMH 87
             T + KG  F+++ ++  +  A+  M+
Sbjct: 244 PTTGKHKGYGFIEYEKAQSSQDAVSSMN 271


>gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo
           sapiens]
          Length = 559

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 2/145 (1%)

Query: 38  ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTK 97
           E  +R+ F+PFG I+ I +  D  T + KG AFV++     A  A+E+M+   LG  + K
Sbjct: 142 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 201

Query: 98  PIKVF-IAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNK 155
             +   I Q++        E     RI+V  + +  +++D++  F+ +G I+ C++ ++ 
Sbjct: 202 VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 261

Query: 156 VTGESKGLGYVRYLKPSQAAQAIEN 180
            TG+ KG G++ Y K   +  A+ +
Sbjct: 262 TTGKHKGYGFIEYEKAQSSQDAVSS 286



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 3   EAGSSASGGGFRPGVDSLDEPPNS--RIFLV-ISKYTPESVLRERFSPFGDIQDIWVVRD 59
           + G  ++ G  +P +D L E   +  RI++  + +   +  ++  F  FG I+   + RD
Sbjct: 201 KVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARD 260

Query: 60  KHTKESKGIAFVKFARSSQACRAMEEMH 87
             T + KG  F+++ ++  +  A+  M+
Sbjct: 261 PTTGKHKGYGFIEYEKAQSSQDAVSSMN 288


>gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3
           [Homo sapiens]
          Length = 486

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 21/209 (10%)

Query: 17  VDSLDEPPNSRIFLVISKYT---PESVLRERFSPFGDIQDIWVVRDK--HTKESKGIAFV 71
           +D  D+P    I + + +      E  LRE F  +G + +I V+RD+  +  +SKG  FV
Sbjct: 5   LDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFV 64

Query: 72  KFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVMIPKSY 131
            F     A  A   +H   + P    PI++  A S  + +   VED +L     MI K  
Sbjct: 65  TFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNA---VEDRKL--FIGMISKKC 119

Query: 132 TEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRY---------LKPSQAAQAIENCD 182
           TE D+R  F  +G IE C I++    G S+G  +V +         +K    AQ +E C 
Sbjct: 120 TENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCS 178

Query: 183 RSFRAILAE-PKNKASESSEQDYYSNMRQ 210
                  A+  K+K  +   Q     M+Q
Sbjct: 179 SPMVVKFADTQKDKEQKRMAQQLQQQMQQ 207



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 108 SSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYV 166
           ++GS +  E  E   +F+  +P+ + ++DL + F  +G++    +  +K T  SK  G+V
Sbjct: 390 AAGSQK--EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 447

Query: 167 RYLKPSQAAQAIEN 180
            Y  P  A  AI++
Sbjct: 448 SYDNPVSAQAAIQS 461



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 41  LRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIK 100
           L + F PFG++    V  DK T  SK   FV +     A  A++ M+G  +G    K +K
Sbjct: 417 LLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG---MKRLK 473

Query: 101 VFIAQSRS 108
           V + +S++
Sbjct: 474 VQLKRSKN 481



 Score = 33.9 bits (76), Expect = 0.33
 Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 31/161 (19%)

Query: 315 IGVSFIDDGSNATDLLRKMA----TQMVAAQLASMVWNNPSQQQFMQFGGSSGSQLPQIQ 370
           +G S + +G+ +T      A     Q  AA L ++   N   QQ +   G++GSQ     
Sbjct: 343 LGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSI---GAAGSQ----- 394

Query: 371 TDVVLPSCKKKAPAETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNV--- 427
                         E P    LFI   P       L  +F  FGN++   +   K     
Sbjct: 395 -------------KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLS 441

Query: 428 ---GYAKYADRISANDAIATLHGKILNGVRLKVMLADSPRE 465
              G+  Y + +SA  AI +++G  +   RLKV L  S  +
Sbjct: 442 KCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 482


>gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1
           [Homo sapiens]
          Length = 482

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 21/209 (10%)

Query: 17  VDSLDEPPNSRIFLVISKYT---PESVLRERFSPFGDIQDIWVVRDK--HTKESKGIAFV 71
           +D  D+P    I + + +      E  LRE F  +G + +I V+RD+  +  +SKG  FV
Sbjct: 5   LDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFV 64

Query: 72  KFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVMIPKSY 131
            F     A  A   +H   + P    PI++  A S  + +   VED +L     MI K  
Sbjct: 65  TFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNA---VEDRKL--FIGMISKKC 119

Query: 132 TEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRY---------LKPSQAAQAIENCD 182
           TE D+R  F  +G IE C I++    G S+G  +V +         +K    AQ +E C 
Sbjct: 120 TENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCS 178

Query: 183 RSFRAILAE-PKNKASESSEQDYYSNMRQ 210
                  A+  K+K  +   Q     M+Q
Sbjct: 179 SPMVVKFADTQKDKEQKRMAQQLQQQMQQ 207



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 108 SSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYV 166
           ++GS +  E  E   +F+  +P+ + ++DL + F  +G++    +  +K T  SK  G+V
Sbjct: 386 AAGSQK--EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 443

Query: 167 RYLKPSQAAQAIEN 180
            Y  P  A  AI++
Sbjct: 444 SYDNPVSAQAAIQS 457



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 41  LRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIK 100
           L + F PFG++    V  DK T  SK   FV +     A  A++ M+G  +G    K +K
Sbjct: 413 LLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG---MKRLK 469

Query: 101 VFIAQSRS 108
           V + +S++
Sbjct: 470 VQLKRSKN 477



 Score = 33.9 bits (76), Expect = 0.33
 Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 31/161 (19%)

Query: 315 IGVSFIDDGSNATDLLRKMA----TQMVAAQLASMVWNNPSQQQFMQFGGSSGSQLPQIQ 370
           +G S + +G+ +T      A     Q  AA L ++   N   QQ +   G++GSQ     
Sbjct: 339 LGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSI---GAAGSQ----- 390

Query: 371 TDVVLPSCKKKAPAETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNV--- 427
                         E P    LFI   P       L  +F  FGN++   +   K     
Sbjct: 391 -------------KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLS 437

Query: 428 ---GYAKYADRISANDAIATLHGKILNGVRLKVMLADSPRE 465
              G+  Y + +SA  AI +++G  +   RLKV L  S  +
Sbjct: 438 KCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 478


>gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2
           [Homo sapiens]
          Length = 483

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 21/209 (10%)

Query: 17  VDSLDEPPNSRIFLVISKYT---PESVLRERFSPFGDIQDIWVVRDK--HTKESKGIAFV 71
           +D  D+P    I + + +      E  LRE F  +G + +I V+RD+  +  +SKG  FV
Sbjct: 5   LDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFV 64

Query: 72  KFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVMIPKSY 131
            F     A  A   +H   + P    PI++  A S  + +   VED +L     MI K  
Sbjct: 65  TFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNA---VEDRKL--FIGMISKKC 119

Query: 132 TEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRY---------LKPSQAAQAIENCD 182
           TE D+R  F  +G IE C I++    G S+G  +V +         +K    AQ +E C 
Sbjct: 120 TENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCS 178

Query: 183 RSFRAILAE-PKNKASESSEQDYYSNMRQ 210
                  A+  K+K  +   Q     M+Q
Sbjct: 179 SPMVVKFADTQKDKEQKRMAQQLQQQMQQ 207



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 108 SSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYV 166
           ++GS +  E  E   +F+  +P+ + ++DL + F  +G++    +  +K T  SK  G+V
Sbjct: 387 AAGSQK--EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 444

Query: 167 RYLKPSQAAQAIEN 180
            Y  P  A  AI++
Sbjct: 445 SYDNPVSAQAAIQS 458



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 41  LRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIK 100
           L + F PFG++    V  DK T  SK   FV +     A  A++ M+G  +G    K +K
Sbjct: 414 LLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG---MKRLK 470

Query: 101 VFIAQSRS 108
           V + +S++
Sbjct: 471 VQLKRSKN 478



 Score = 33.9 bits (76), Expect = 0.33
 Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 31/161 (19%)

Query: 315 IGVSFIDDGSNATDLLRKMA----TQMVAAQLASMVWNNPSQQQFMQFGGSSGSQLPQIQ 370
           +G S + +G+ +T      A     Q  AA L ++   N   QQ +   G++GSQ     
Sbjct: 340 LGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSI---GAAGSQ----- 391

Query: 371 TDVVLPSCKKKAPAETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNV--- 427
                         E P    LFI   P       L  +F  FGN++   +   K     
Sbjct: 392 -------------KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLS 438

Query: 428 ---GYAKYADRISANDAIATLHGKILNGVRLKVMLADSPRE 465
              G+  Y + +SA  AI +++G  +   RLKV L  S  +
Sbjct: 439 KCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 479


>gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3
           [Homo sapiens]
          Length = 508

 Score = 69.3 bits (168), Expect = 7e-12
 Identities = 59/220 (26%), Positives = 93/220 (42%), Gaps = 21/220 (9%)

Query: 6   SSASGGGFRPGVDSLDEPPNSRIFLVISKYT---PESVLRERFSPFGDIQDIWVVRDK-- 60
           S+ +       +D  D+P    I + + +      E  L+E F P+G +  I V+RD+  
Sbjct: 18  SNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQ 77

Query: 61  HTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEEL 120
           +  +SKG  FV F     A  A   +H     P    PI++  A S  S +   VED +L
Sbjct: 78  NPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNA---VEDRKL 134

Query: 121 TRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRY---------LKP 171
                M+ K   E D+R  F  +G IE C I++    G S+G  +V +         +K 
Sbjct: 135 --FIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKA 191

Query: 172 SQAAQAIENCDRSFRAILAE-PKNKASESSEQDYYSNMRQ 210
              +Q +E C        A+  K+K     +Q     M+Q
Sbjct: 192 MHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 231



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 22  EPPNSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACR 81
           E  N  I+ +  ++  + +L + F PFG++    V  DK T  SK   FV +     A  
Sbjct: 421 EGANLFIYHLPQEFGDQDIL-QMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 479

Query: 82  AMEEMHGQCLGPNDTKPIKVFIAQSRS 108
           A++ M+G  +G    K +KV + +S++
Sbjct: 480 AIQAMNGFQIG---MKRLKVQLKRSKN 503



 Score = 32.7 bits (73), Expect = 0.74
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 385 ETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNV------GYAKYADRISA 438
           E P    LFI   P       +  +F  FGN+I   +   K        G+  Y + +SA
Sbjct: 418 EGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSA 477

Query: 439 NDAIATLHGKILNGVRLKVMLADSPRE 465
             AI  ++G  +   RLKV L  S  +
Sbjct: 478 QAAIQAMNGFQIGMKRLKVQLKRSKND 504


>gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4
           [Homo sapiens]
          Length = 488

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 21/209 (10%)

Query: 17  VDSLDEPPNSRIFLVISKYT---PESVLRERFSPFGDIQDIWVVRDK--HTKESKGIAFV 71
           +D  D+P    I + + +      E  L+E F P+G +  I V+RD+  +  +SKG  FV
Sbjct: 5   LDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64

Query: 72  KFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVMIPKSY 131
            F     A  A   +H     P    PI++  A S  S +   VED +L     M+ K  
Sbjct: 65  TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNA---VEDRKL--FIGMVSKKC 119

Query: 132 TEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRY---------LKPSQAAQAIENCD 182
            E D+R  F  +G IE C I++    G S+G  +V +         +K    +Q +E C 
Sbjct: 120 NENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCS 178

Query: 183 RSFRAILAE-PKNKASESSEQDYYSNMRQ 210
                  A+  K+K     +Q     M+Q
Sbjct: 179 SPIVVKFADTQKDKEQRRLQQQLAQQMQQ 207



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 22  EPPNSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACR 81
           E  N  I+ +  ++  + +L + F PFG++    V  DK T  SK   FV +     A  
Sbjct: 401 EGANLFIYHLPQEFGDQDIL-QMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 459

Query: 82  AMEEMHGQCLGPNDTKPIKVFIAQSRS 108
           A++ M+G  +G    K +KV + +S++
Sbjct: 460 AIQAMNGFQIG---MKRLKVQLKRSKN 483



 Score = 32.7 bits (73), Expect = 0.74
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 385 ETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNV------GYAKYADRISA 438
           E P    LFI   P       +  +F  FGN+I   +   K        G+  Y + +SA
Sbjct: 398 EGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSA 457

Query: 439 NDAIATLHGKILNGVRLKVMLADSPRE 465
             AI  ++G  +   RLKV L  S  +
Sbjct: 458 QAAIQAMNGFQIGMKRLKVQLKRSKND 484


>gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1
           [Homo sapiens]
          Length = 490

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 21/209 (10%)

Query: 17  VDSLDEPPNSRIFLVISKYT---PESVLRERFSPFGDIQDIWVVRDK--HTKESKGIAFV 71
           +D  D+P    I + + +      E  L+E F P+G +  I V+RD+  +  +SKG  FV
Sbjct: 5   LDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64

Query: 72  KFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVMIPKSY 131
            F     A  A   +H     P    PI++  A S  S +   VED +L     M+ K  
Sbjct: 65  TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNA---VEDRKL--FIGMVSKKC 119

Query: 132 TEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRY---------LKPSQAAQAIENCD 182
            E D+R  F  +G IE C I++    G S+G  +V +         +K    +Q +E C 
Sbjct: 120 NENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCS 178

Query: 183 RSFRAILAE-PKNKASESSEQDYYSNMRQ 210
                  A+  K+K     +Q     M+Q
Sbjct: 179 SPIVVKFADTQKDKEQRRLQQQLAQQMQQ 207



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 22  EPPNSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACR 81
           E  N  I+ +  ++  + +L + F PFG++    V  DK T  SK   FV +     A  
Sbjct: 403 EGANLFIYHLPQEFGDQDIL-QMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 461

Query: 82  AMEEMHGQCLGPNDTKPIKVFIAQSRS 108
           A++ M+G  +G    K +KV + +S++
Sbjct: 462 AIQAMNGFQIG---MKRLKVQLKRSKN 485



 Score = 32.7 bits (73), Expect = 0.74
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 385 ETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNV------GYAKYADRISA 438
           E P    LFI   P       +  +F  FGN+I   +   K        G+  Y + +SA
Sbjct: 400 EGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSA 459

Query: 439 NDAIATLHGKILNGVRLKVMLADSPRE 465
             AI  ++G  +   RLKV L  S  +
Sbjct: 460 QAAIQAMNGFQIGMKRLKVQLKRSKND 486


>gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2
           [Homo sapiens]
          Length = 521

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 21/209 (10%)

Query: 17  VDSLDEPPNSRIFLVISKYT---PESVLRERFSPFGDIQDIWVVRDK--HTKESKGIAFV 71
           +D  D+P    I + + +      E  L+E F P+G +  I V+RD+  +  +SKG  FV
Sbjct: 36  LDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 95

Query: 72  KFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVMIPKSY 131
            F     A  A   +H     P    PI++  A S  S +   VED +L     M+ K  
Sbjct: 96  TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNA---VEDRKL--FIGMVSKKC 150

Query: 132 TEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRY---------LKPSQAAQAIENCD 182
            E D+R  F  +G IE C I++    G S+G  +V +         +K    +Q +E C 
Sbjct: 151 NENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCS 209

Query: 183 RSFRAILAE-PKNKASESSEQDYYSNMRQ 210
                  A+  K+K     +Q     M+Q
Sbjct: 210 SPIVVKFADTQKDKEQRRLQQQLAQQMQQ 238



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 22  EPPNSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACR 81
           E  N  I+ +  ++  + +L + F PFG++    V  DK T  SK   FV +     A  
Sbjct: 434 EGANLFIYHLPQEFGDQDIL-QMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 492

Query: 82  AMEEMHGQCLGPNDTKPIKVFIAQSRS 108
           A++ M+G  +G    K +KV + +S++
Sbjct: 493 AIQAMNGFQIG---MKRLKVQLKRSKN 516



 Score = 32.7 bits (73), Expect = 0.74
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 385 ETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNV------GYAKYADRISA 438
           E P    LFI   P       +  +F  FGN+I   +   K        G+  Y + +SA
Sbjct: 431 EGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSA 490

Query: 439 NDAIATLHGKILNGVRLKVMLADSPRE 465
             AI  ++G  +   RLKV L  S  +
Sbjct: 491 QAAIQAMNGFQIGMKRLKVQLKRSKND 517


>gi|38201714 ELAV-like 1 [Homo sapiens]
          Length = 326

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 44/152 (28%), Positives = 81/152 (53%), Gaps = 13/152 (8%)

Query: 31  VISKYTPESV----LRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEM 86
           +I  Y P+++    LR  FS  G+++   ++RDK    S G  FV +  +  A RA+  +
Sbjct: 22  LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81

Query: 87  HGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVMIPKSYTEEDLREKFKVYGDI 146
           +G  L    +K IKV  A+  S      ++D  L      +P++ T++D+ + F  +G I
Sbjct: 82  NGLRL---QSKTIKVSYARPSSEV----IKDANL--YISGLPRTMTQKDVEDMFSRFGRI 132

Query: 147 EYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178
               ++ ++ TG S+G+ ++R+ K S+A +AI
Sbjct: 133 INSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 11/112 (9%)

Query: 7   SASGGGFRPGVDSLDEPPNSR----IFLV-ISKYTPESVLRERFSPFGDIQDIWVVRDKH 61
           S  G     G+  ++ P N+     IF+  + +   E +L + F PFG + ++ V+RD +
Sbjct: 221 SPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFN 280

Query: 62  TKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHR 113
           T + KG  FV      +A  A+  ++G  LG       K+     +++ SH+
Sbjct: 281 TNKCKGFGFVTMTNYEEAAMAIASLNGYRLGD------KILQVSFKTNKSHK 326



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 41  LRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIK 100
           + + FS FG I +  V+ D+ T  S+G+AF++F + S+A  A+   +G    P  ++PI 
Sbjct: 122 VEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGH-KPPGSSEPIT 180

Query: 101 VFIA 104
           V  A
Sbjct: 181 VKFA 184



 Score = 29.6 bits (65), Expect = 6.2
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 9/95 (9%)

Query: 383 PAETPVKE-RLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLV------SGKNVGYAKYADR 435
           P+   +K+  L+I   P  +    +ED+F RFG +I   ++        + V + ++  R
Sbjct: 98  PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKR 157

Query: 436 ISANDAIATLHGKILNGVR--LKVMLADSPREESN 468
             A +AI + +G    G    + V  A +P +  N
Sbjct: 158 SEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKN 192


>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
           sapiens]
          Length = 631

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 19/201 (9%)

Query: 32  ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
           + K      L + FS FG+I    VV D++   SKG AFV F     A +A+E+M+G  L
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLL 163

Query: 92  GPNDTKPIKVFIAQSRSSGSHRDVE----DEELTRIFVM-IPKSYTEEDLREKFKVYGDI 146
             ND    KVF+ + +S    R+ E     +E T +++    +   +E L+E F  +G  
Sbjct: 164 --NDR---KVFVGRFKSR-KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 217

Query: 147 EYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRA----ILAEPKNKASESSE- 201
               ++++   G+SKG G+V Y K   A +A+E  +    +     +   + K    +E 
Sbjct: 218 LSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAEL 276

Query: 202 QDYYSNMRQEALGHEPRVNMF 222
           +  +  ++QE +     VN++
Sbjct: 277 KRKFEQLKQERISRYQGVNLY 297



 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 11/143 (7%)

Query: 38  ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTK 97
           E++L E+FSP G +  I V RD  T+ S G A+V F + + A RA++ M+   +     K
Sbjct: 24  EAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI---KGK 80

Query: 98  PIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKV 156
           PI++  +Q   S     +    +  +F+  + KS   + L + F  +G+I  C ++ ++ 
Sbjct: 81  PIRIMWSQRDPS-----LRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE- 134

Query: 157 TGESKGLGYVRYLKPSQAAQAIE 179
              SKG  +V +     A +AIE
Sbjct: 135 -NGSKGYAFVHFETQEAADKAIE 156



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 12/147 (8%)

Query: 41  LRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDT---K 97
           L+E FS FG    + V+RD + K SKG  FV + +   A +A+EEM+G+ +        +
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265

Query: 98  PIKVFIAQSRSSGSHRDVEDEELTR-----IFVM-IPKSYTEEDLREKFKVYGDIEYCSI 151
             K    Q+        ++ E ++R     +++  +  +  +E LR++F  +G I    +
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 325

Query: 152 IKNKVTGESKGLGYVRYLKPSQAAQAI 178
           +     G SKG G+V +  P +A +A+
Sbjct: 326 MLE--DGRSKGFGFVCFSSPEEATKAV 350



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 41  LRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIK 100
           LR+ FSPFG I    V+ +     SKG  FV F+   +A +A+ EM+G+ +G   +KP+ 
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVG---SKPLY 364

Query: 101 VFIAQSR 107
           V +AQ +
Sbjct: 365 VALAQRK 371



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 132 TEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRAILAE 191
           TE  L EKF   G +    + ++ +T  S G  YV + +P+ A +A++    +F  I  +
Sbjct: 23  TEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT--MNFDVIKGK 80

Query: 192 P 192
           P
Sbjct: 81  P 81


>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
           sapiens]
          Length = 644

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 19/201 (9%)

Query: 32  ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
           + K      L + FS FG+I    VV D++   SKG AFV F     A +A+E+M+G  L
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLL 163

Query: 92  GPNDTKPIKVFIAQSRSSGSHRDVE----DEELTRIFVM-IPKSYTEEDLREKFKVYGDI 146
             ND    KVF+ + +S    R+ E     +E T +++    +   +E L+E F  +G  
Sbjct: 164 --NDR---KVFVGRFKSR-KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 217

Query: 147 EYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRA----ILAEPKNKASESSE- 201
               ++++   G+SKG G+V Y K   A +A+E  +    +     +   + K    +E 
Sbjct: 218 LSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAEL 276

Query: 202 QDYYSNMRQEALGHEPRVNMF 222
           +  +  ++QE +     VN++
Sbjct: 277 KRKFEQLKQERISRYQGVNLY 297



 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 11/143 (7%)

Query: 38  ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTK 97
           E++L E+FSP G +  I V RD  T+ S G A+V F + + A RA++ M+   +     K
Sbjct: 24  EAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI---KGK 80

Query: 98  PIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKV 156
           PI++  +Q   S     +    +  +F+  + KS   + L + F  +G+I  C ++ ++ 
Sbjct: 81  PIRIMWSQRDPS-----LRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE- 134

Query: 157 TGESKGLGYVRYLKPSQAAQAIE 179
              SKG  +V +     A +AIE
Sbjct: 135 -NGSKGYAFVHFETQEAADKAIE 156



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 12/147 (8%)

Query: 41  LRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDT---K 97
           L+E FS FG    + V+RD + K SKG  FV + +   A +A+EEM+G+ +        +
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265

Query: 98  PIKVFIAQSRSSGSHRDVEDEELTR-----IFVM-IPKSYTEEDLREKFKVYGDIEYCSI 151
             K    Q+        ++ E ++R     +++  +  +  +E LR++F  +G I    +
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 325

Query: 152 IKNKVTGESKGLGYVRYLKPSQAAQAI 178
           +     G SKG G+V +  P +A +A+
Sbjct: 326 MLE--DGRSKGFGFVCFSSPEEATKAV 350



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 41  LRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIK 100
           LR+ FSPFG I    V+ +     SKG  FV F+   +A +A+ EM+G+ +G   +KP+ 
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVG---SKPLY 364

Query: 101 VFIAQSR 107
           V +AQ +
Sbjct: 365 VALAQRK 371



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 132 TEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRAILAE 191
           TE  L EKF   G +    + ++ +T  S G  YV + +P+ A +A++    +F  I  +
Sbjct: 23  TEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT--MNFDVIKGK 80

Query: 192 P 192
           P
Sbjct: 81  P 81


>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
           sapiens]
          Length = 660

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 19/201 (9%)

Query: 32  ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
           + K      L + FS FG+I    VV D++   SKG AFV F     A +A+E+M+G  L
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLL 163

Query: 92  GPNDTKPIKVFIAQSRSSGSHRDVE----DEELTRIFVM-IPKSYTEEDLREKFKVYGDI 146
             ND    KVF+ + +S    R+ E     +E T +++    +   +E L+E F  +G  
Sbjct: 164 --NDR---KVFVGRFKSR-KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 217

Query: 147 EYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRA----ILAEPKNKASESSE- 201
               ++++   G+SKG G+V Y K   A +A+E  +    +     +   + K    +E 
Sbjct: 218 LSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAEL 276

Query: 202 QDYYSNMRQEALGHEPRVNMF 222
           +  +  ++QE +     VN++
Sbjct: 277 KRKFEQLKQERISRYQGVNLY 297



 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 11/143 (7%)

Query: 38  ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTK 97
           E++L E+FSP G +  I V RD  T+ S G A+V F + + A RA++ M+   +     K
Sbjct: 24  EAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI---KGK 80

Query: 98  PIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKV 156
           PI++  +Q   S     +    +  +F+  + KS   + L + F  +G+I  C ++ ++ 
Sbjct: 81  PIRIMWSQRDPS-----LRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE- 134

Query: 157 TGESKGLGYVRYLKPSQAAQAIE 179
              SKG  +V +     A +AIE
Sbjct: 135 -NGSKGYAFVHFETQEAADKAIE 156



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 12/147 (8%)

Query: 41  LRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDT---K 97
           L+E FS FG    + V+RD + K SKG  FV + +   A +A+EEM+G+ +        +
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265

Query: 98  PIKVFIAQSRSSGSHRDVEDEELTR-----IFVM-IPKSYTEEDLREKFKVYGDIEYCSI 151
             K    Q+        ++ E ++R     +++  +  +  +E LR++F  +G I    +
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 325

Query: 152 IKNKVTGESKGLGYVRYLKPSQAAQAI 178
           +     G SKG G+V +  P +A +A+
Sbjct: 326 MLE--DGRSKGFGFVCFSSPEEATKAV 350



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 41  LRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIK 100
           LR+ FSPFG I    V+ +     SKG  FV F+   +A +A+ EM+G+ +G   +KP+ 
Sbjct: 310 LRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVG---SKPLY 364

Query: 101 VFIAQSR 107
           V +AQ +
Sbjct: 365 VALAQRK 371



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 132 TEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRAILAE 191
           TE  L EKF   G +    + ++ +T  S G  YV + +P+ A +A++    +F  I  +
Sbjct: 23  TEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT--MNFDVIKGK 80

Query: 192 P 192
           P
Sbjct: 81  P 81


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,155,580
Number of Sequences: 37866
Number of extensions: 796922
Number of successful extensions: 2626
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1890
Number of HSP's gapped (non-prelim): 606
length of query: 474
length of database: 18,247,518
effective HSP length: 106
effective length of query: 368
effective length of database: 14,233,722
effective search space: 5238009696
effective search space used: 5238009696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.