Guide to the Human Genome
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Name: GRAMD1A Sequence: fasta or formatted (724aa) NCBI GI: 92110010
Description:

GRAM domain containing 1A isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {713aa} GRAM domain containing 1A isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         39           2
 C cysteine            1.7         12           1
 D aspartate           5.0         36           2
 E glutamate           7.0         51           2
 F phenylalanine       3.7         27           2
 G glycine             6.2         45           2
 H histidine           2.6         19           2
 I isoleucine          4.4         32           2
 K lysine              4.7         34           2
 L leucine            11.7         85           2
 M methionine          0.8          6           1
 N asparagine          2.1         15           1
 P proline             7.2         52           3
 Q glutamine           4.8         35           2
 R arginine            6.4         46           3
 S serine             12.0         87           4
 T threonine           5.8         42           2
 V valine              4.6         33           2
 W tryptophan          1.8         13           1
 Y tyrosine            2.1         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GRAM domain containing 1A isoform 1 
GRAMD1A               0.974   GRAM domain containing 1A isoform 2 
GRAMD1B               0.424   GRAM domain containing 1B 
GRAMD1C               0.287   GRAM domain containing 1C 
GRAMD3                0.056   GRAM domain containing 3 isoform 5 
GRAMD3                0.056   GRAM domain containing 3 isoform 1 
GRAMD3                0.056   GRAM domain containing 3 isoform 2 
GRAMD3                0.055   GRAM domain containing 3 isoform 4 
GRAMD3                0.052   GRAM domain containing 3 isoform 3 
GRAMD2                0.047   GRAM domain containing 2 
TBC1D9                0.028   TBC1 domain family, member 9 (with GRAM domain) [Ho...
TBC1D8B               0.026   TBC1 domain family, member 8B (with GRAM domain) iso...
TBC1D8B               0.026   TBC1 domain family, member 8B (with GRAM domain) iso...
TBC1D9B               0.024   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D9B               0.024   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D8                0.016   TBC1 domain family, member 8 
AFF1                  0.010   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
RYR1                  0.010   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.010   skeletal muscle ryanodine receptor isoform 1 
TMEM132E              0.009   transmembrane protein 132E 
PHACTR3               0.008   phosphatase and actin regulator 3 isoform 2 
PHACTR3               0.008   phosphatase and actin regulator 3 isoform 1 
SAPS1                 0.008   SAPS domain family, member 1 
SALL3                 0.008   sal-like 3 
TSHZ1                 0.008   teashirt family zinc finger 1 
EDEM3                 0.008   ER degradation enhancer, mannosidase alpha-like 3 [...
FAM75C1               0.008   family with sequence similarity 75, member C1 [Homo...
DNM1                  0.008   dynamin 1 isoform 2 
DNM1                  0.008   dynamin 1 isoform 1 
PRPF40B               0.008   Huntingtin interacting protein C isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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