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Search of human proteins with 8923557
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8923557 chromosome 20 open reading frame 11 [Homo sapiens]
(228 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8923557 chromosome 20 open reading frame 11 [Homo sapiens] 451 e-127
gi|62953131 macrophage erythroblast attacher isoform 1 [Homo sap... 53 2e-07
gi|39812378 RAN binding protein 9 [Homo sapiens] 52 4e-07
gi|40538736 RAN binding protein 10 [Homo sapiens] 47 2e-05
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 38 0.006
gi|110611228 utrophin [Homo sapiens] 36 0.024
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 34 0.12
gi|109948304 smu-1 suppressor of mec-8 and unc-52 homolog [Homo ... 34 0.12
gi|213021190 transducin beta-like 1X isoform b [Homo sapiens] 32 0.34
gi|213021188 transducin beta-like 1X isoform b [Homo sapiens] 32 0.34
gi|213021186 transducin beta-like 1X isoform a [Homo sapiens] 32 0.34
gi|5032159 transducin beta-like 1X isoform a [Homo sapiens] 32 0.34
gi|4506787 IQ motif containing GTPase activating protein 1 [Homo... 32 0.45
gi|62953129 macrophage erythroblast attacher isoform 2 [Homo sap... 32 0.45
gi|4557741 platelet-activating factor acetylhydrolase, isoform I... 32 0.59
gi|239756270 PREDICTED: StAR-related lipid transfer (START) doma... 32 0.59
gi|239750815 PREDICTED: StAR-related lipid transfer (START) doma... 32 0.59
gi|239745175 PREDICTED: StAR-related lipid transfer (START) doma... 32 0.59
gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo s... 32 0.59
gi|157502225 Janus kinase and microtubule interacting protein 3 ... 31 1.00
gi|15208660 tripartite motif protein 21 [Homo sapiens] 31 1.00
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 31 1.00
gi|71051596 coiled-coil domain containing 7 [Homo sapiens] 31 1.00
gi|37059792 coiled-coil domain containing 7 [Homo sapiens] 31 1.00
gi|13376042 dermal papilla derived protein 13 [Homo sapiens] 30 1.3
gi|22035548 amyloid beta A4 precursor protein-binding, family A,... 30 2.2
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 29 2.9
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 29 2.9
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 29 2.9
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 29 2.9
>gi|8923557 chromosome 20 open reading frame 11 [Homo sapiens]
Length = 228
Score = 451 bits (1160), Expect = e-127
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MSYAEKPDEITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVD 60
MSYAEKPDEITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVD
Sbjct: 1 MSYAEKPDEITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVD 60
Query: 61 LETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEA 120
LETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEA
Sbjct: 61 LETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEA 120
Query: 121 ALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAV 180
ALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAV
Sbjct: 121 ALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAV 180
Query: 181 LDYENRESTPKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEPK 228
LDYENRESTPKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEPK
Sbjct: 181 LDYENRESTPKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEPK 228
>gi|62953131 macrophage erythroblast attacher isoform 1 [Homo
sapiens]
Length = 396
Score = 52.8 bits (125), Expect = 2e-07
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 25 QRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIA 84
+R M+R+++ +L+ G+ A K +SGIE V++E ++ E + + + +A
Sbjct: 121 KRKRMDRMMVEHLLRCGYYNTAVKLARQSGIEDLVNIEMFLTAKEVEESLERRETATCLA 180
Query: 85 LINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEME 144
+ L L F L+ Q IELIRQ + A+ A+ + Q E S+ L E+
Sbjct: 181 WCHDNKSRLRKMKSCLEFSLRIQEFIELIRQNKRLDAVRHARKHFS-QAEGSQ--LDEVR 237
Query: 145 RTLALLAFDSPEE-SPFGDLL 164
+ + +LAF SP+ DLL
Sbjct: 238 QAMGMLAFPPDTHISPYKDLL 258
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 52.0 bits (123), Expect = 4e-07
Identities = 26/91 (28%), Positives = 51/91 (56%)
Query: 29 MNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIALINS 88
+ +++ +YLV G+ AE F + +L ++ R +I++++L G++ EAI
Sbjct: 369 IQKMVSSYLVHHGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEAIETTQQ 428
Query: 89 LHPELLDTNRYLYFHLQQQHLIELIRQRETE 119
L+P LL+ N L F L+ + IE++ ++E
Sbjct: 429 LYPSLLERNPNLLFTLKVRQFIEMVNGTDSE 459
Score = 39.3 bits (90), Expect = 0.003
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 115 QRETEAALEFAQTQLAEQGEESRECLTE------MERTLALLAFDSPEESPFGDLLHTMQ 168
Q E + F + A + R+C ++ +LLA+ P SP G+ L +Q
Sbjct: 614 QAAIERMIHFGRELQAMSEQLRRDCGKNTANKKMLKDAFSLLAYSDPWNSPVGNQLDPIQ 673
Query: 169 RQKVWSEVNQAVLDYENRESTPKLA 193
R+ V S +N A+L+ N P LA
Sbjct: 674 REPVCSALNSAILETHNLPKQPPLA 698
>gi|40538736 RAN binding protein 10 [Homo sapiens]
Length = 620
Score = 46.6 bits (109), Expect = 2e-05
Identities = 24/94 (25%), Positives = 50/94 (53%)
Query: 26 RADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIAL 85
+A + ++ +YLV G+ A F + + ++ R KI++++L+G++ EAI
Sbjct: 254 QAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEAIET 313
Query: 86 INSLHPELLDTNRYLYFHLQQQHLIELIRQRETE 119
+P LL+ N L F L+ + +E++ ++E
Sbjct: 314 TQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSE 347
Score = 35.8 bits (81), Expect = 0.031
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 115 QRETEAALEFAQTQLAEQGEESRE-----CLTEM-ERTLALLAFDSPEESPFGDLLHTMQ 168
Q TE + F + A + RE TEM + +LLA+ P P G L +Q
Sbjct: 505 QAATERIILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQ 564
Query: 169 RQKVWSEVNQAVLDYENRESTPKL 192
R+ V + +N A+L+ +N P L
Sbjct: 565 REPVCAALNSAILESQNLPKQPPL 588
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 38.1 bits (87), Expect = 0.006
Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 30/181 (16%)
Query: 62 ETLDERIKIREMILKGQIQEAIALINSLHP-----ELLDTNRYLYFHLQQQHLIELIRQR 116
E LDER++ E I + E LI L E L+ ++ + ++ + E + +
Sbjct: 321 EQLDERLQELEKIKDLHMAEKTKLITQLRDAKNLIEQLEQDKGMVIAETKRQMHETLEMK 380
Query: 117 ETEAA-LEFAQTQLAEQGEESRECLTEMERTL------ALLAFDSPEES------PFGDL 163
E E A L Q+ QGEE RE + ER AL EE+ +
Sbjct: 381 EEEIAQLRSRIKQMTTQGEELREQKEKSERAAFEELEKALSTAQKTEEARRKLKAEMDEQ 440
Query: 164 LHTMQR---------QKVWSEVNQAVLDYENRESTPKLAKLLKLLLWAQNELDQKKVKYP 214
+ T+++ Q+ S V Q V+D + S ++AKL KL + EL +K+ +
Sbjct: 441 IKTIEKTSEEERISLQQELSRVKQEVVDVMKKSSEEQIAKLQKL---HEKELARKEQELT 497
Query: 215 K 215
K
Sbjct: 498 K 498
>gi|110611228 utrophin [Homo sapiens]
Length = 3433
Score = 36.2 bits (82), Expect = 0.024
Identities = 55/224 (24%), Positives = 84/224 (37%), Gaps = 35/224 (15%)
Query: 15 WMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREM- 73
W+E L+ L ++ +N L TE E + SV D R +IRE+
Sbjct: 1235 WIELLHYLDLETTWLNTLEERMKSTEVLPEKTDAVNEALESLESVLRHPADNRTQIRELG 1294
Query: 74 -------ILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQ----RETEAAL 122
IL I E + NS + +L HL + I L +Q RET+ L
Sbjct: 1295 QTLIDGGILDDIISEKLEAFNSRYEDL--------SHLAESKQISLEKQLQVLRETDQML 1346
Query: 123 EFAQTQLAEQGEESRECLTEM-------ERTLALLAFDSPEESPFGDLLHTMQRQKVWSE 175
+ Q L E ++ LT+ + + A S E +L M+ Q + S
Sbjct: 1347 QVLQESLGELDKQLTTYLTDRIDAFQVPQEAQKIQAEISAHELTLEELRRNMRSQPLTSP 1406
Query: 176 VNQA--------VLDYENRESTPKLAKLLKLLLWAQNELDQKKV 211
++ VL + RE + K K + Q LD K+V
Sbjct: 1407 ESRTARGGSQMDVLQRKLREVSTKFQLFQKPANFEQRMLDCKRV 1450
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 33.9 bits (76), Expect = 0.12
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 17/153 (11%)
Query: 59 VDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRET 118
V+LE +++ E L+ + + AL SL + LD NR L+ Q E
Sbjct: 718 VELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNR-------------LVAQLEE 764
Query: 119 E-AALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVN 177
E +AL+ Q Q ++ +RE E ER L L ++ + E
Sbjct: 765 EKSALQGRQRQAEQEATVARE---EQERLEELRLEQEVARQGLEGSLRVAEQAQEALEQQ 821
Query: 178 QAVLDYENRESTPKLAKLLKLLLWAQNELDQKK 210
L +E + +LA+L + L + EL+Q +
Sbjct: 822 LPTLRHERSQLQEQLAQLSRQLSGREQELEQAR 854
>gi|109948304 smu-1 suppressor of mec-8 and unc-52 homolog [Homo
sapiens]
Length = 513
Score = 33.9 bits (76), Expect = 0.12
Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 17/188 (9%)
Query: 21 NLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQ 80
++ ++ +D+ RLIM YL A + E+ +V L T+D I G
Sbjct: 2 SIEIESSDVIRLIMQYLKENSLHRALATLQEET----TVSLNTVDSIESFVADINSGHWD 57
Query: 81 EAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQ--TQLAEQGEESRE 138
+ I SL +L D L +Q ++ELI RE AA + + + E
Sbjct: 58 TVLQAIQSL--KLPDKT---LIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPE 112
Query: 139 CLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENRESTPKLAKLL-K 197
+E LA FD E P G ++K + + QA+ + +L LL +
Sbjct: 113 RYIHLENLLARSYFDPREAYPDGS-----SKEKRRAAIAQALAGEVSVVPPSRLMALLGQ 167
Query: 198 LLLWAQNE 205
L W Q++
Sbjct: 168 ALKWQQHQ 175
>gi|213021190 transducin beta-like 1X isoform b [Homo sapiens]
Length = 526
Score = 32.3 bits (72), Expect = 0.34
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 26/122 (21%)
Query: 28 DMNRLIMNYLVTEGFKEAAEKFRMESGIEPS-----------------VDLETLDERIKI 70
++N L+ YL GF +A F +ES I S L+ ++ I I
Sbjct: 7 EVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISI 66
Query: 71 RE--MILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQ 128
E + G+ E+++LI+++ P+++ T QQ +L +Q+ + AA A T
Sbjct: 67 NEDGTVFDGRPIESLSLIDAVMPDVVQTR-------QQAFREKLAQQQASAAAAAAAATA 119
Query: 129 LA 130
A
Sbjct: 120 AA 121
>gi|213021188 transducin beta-like 1X isoform b [Homo sapiens]
Length = 526
Score = 32.3 bits (72), Expect = 0.34
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 26/122 (21%)
Query: 28 DMNRLIMNYLVTEGFKEAAEKFRMESGIEPS-----------------VDLETLDERIKI 70
++N L+ YL GF +A F +ES I S L+ ++ I I
Sbjct: 7 EVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISI 66
Query: 71 RE--MILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQ 128
E + G+ E+++LI+++ P+++ T QQ +L +Q+ + AA A T
Sbjct: 67 NEDGTVFDGRPIESLSLIDAVMPDVVQTR-------QQAFREKLAQQQASAAAAAAAATA 119
Query: 129 LA 130
A
Sbjct: 120 AA 121
>gi|213021186 transducin beta-like 1X isoform a [Homo sapiens]
Length = 577
Score = 32.3 bits (72), Expect = 0.34
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 26/122 (21%)
Query: 28 DMNRLIMNYLVTEGFKEAAEKFRMESGIEPS-----------------VDLETLDERIKI 70
++N L+ YL GF +A F +ES I S L+ ++ I I
Sbjct: 58 EVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISI 117
Query: 71 RE--MILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQ 128
E + G+ E+++LI+++ P+++ T QQ +L +Q+ + AA A T
Sbjct: 118 NEDGTVFDGRPIESLSLIDAVMPDVVQTR-------QQAFREKLAQQQASAAAAAAAATA 170
Query: 129 LA 130
A
Sbjct: 171 AA 172
>gi|5032159 transducin beta-like 1X isoform a [Homo sapiens]
Length = 577
Score = 32.3 bits (72), Expect = 0.34
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 26/122 (21%)
Query: 28 DMNRLIMNYLVTEGFKEAAEKFRMESGIEPS-----------------VDLETLDERIKI 70
++N L+ YL GF +A F +ES I S L+ ++ I I
Sbjct: 58 EVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISI 117
Query: 71 RE--MILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQ 128
E + G+ E+++LI+++ P+++ T QQ +L +Q+ + AA A T
Sbjct: 118 NEDGTVFDGRPIESLSLIDAVMPDVVQTR-------QQAFREKLAQQQASAAAAAAAATA 170
Query: 129 LA 130
A
Sbjct: 171 AA 172
>gi|4506787 IQ motif containing GTPase activating protein 1 [Homo
sapiens]
Length = 1657
Score = 32.0 bits (71), Expect = 0.45
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 37/129 (28%)
Query: 4 AEKPDEITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLET 63
A+ PD++ K + +++ +NL +Q +K ++++G++ +L T
Sbjct: 1432 AKTPDKMKKSKSVKEDSNLTLQE--------------------KKEKIQTGLKKLTELGT 1471
Query: 64 LDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALE 123
+D + K +E LIN + ++ + RY +Q+ EL++ ++T AAL
Sbjct: 1472 VDPKNKYQE------------LINDIARDIRNQRRY-----RQRRKAELVKLQQTYAALN 1514
Query: 124 FAQTQLAEQ 132
T EQ
Sbjct: 1515 SKATFYGEQ 1523
>gi|62953129 macrophage erythroblast attacher isoform 2 [Homo
sapiens]
Length = 355
Score = 32.0 bits (71), Expect = 0.45
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 45/141 (31%)
Query: 25 QRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIA 84
+R M+R+++ +L+ G+ A K +SGIE ++
Sbjct: 121 KRKRMDRMMVEHLLRCGYYNTAVKLARQSGIESCLE------------------------ 156
Query: 85 LINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEME 144
F L+ Q IELIRQ + A+ A+ + Q E S+ L E+
Sbjct: 157 -----------------FSLRIQEFIELIRQNKRLDAVRHARKHFS-QAEGSQ--LDEVR 196
Query: 145 RTLALLAFDSPEE-SPFGDLL 164
+ + +LAF SP+ DLL
Sbjct: 197 QAMGMLAFPPDTHISPYKDLL 217
>gi|4557741 platelet-activating factor acetylhydrolase, isoform
Ib, alpha subunit [Homo sapiens]
Length = 410
Score = 31.6 bits (70), Expect = 0.59
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 25 QRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLE 62
QR ++NR I +YL + G++EA F+ E+ ++ + +L+
Sbjct: 7 QRDELNRAIADYLRSNGYEEAYSVFKKEAELDVNEELD 44
>gi|239756270 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 31.6 bits (70), Expect = 0.59
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 105 QQQHLIELIRQR----ETEAA--LEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEES 158
QQQ +E +R + E AA LEF Q +++Q +E+++CL E LA L E+
Sbjct: 604 QQQSYVEDLRHQILAEEIRAAKELEFDQAWISQQIKENQQCLLREETWLASLQQQQQEDQ 663
Query: 159 PFGDLLHTMQRQKVWSEVNQAVLDYENRESTPKLAKLLKL----LLWAQNELDQKKVKY 213
L W + + + +S ++ L L L A+ + +KKV +
Sbjct: 664 VAEKELEASVALDAWLQTDPEIQPSPFVQSQKRVVHLQLLRRHTLRAAERNVRRKKVSF 722
>gi|239750815 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 31.6 bits (70), Expect = 0.59
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 105 QQQHLIELIRQR----ETEAA--LEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEES 158
QQQ +E +R + E AA LEF Q +++Q +E+++CL E LA L E+
Sbjct: 604 QQQSYVEDLRHQILAEEIRAAKELEFDQAWISQQIKENQQCLLREETWLASLQQQQQEDQ 663
Query: 159 PFGDLLHTMQRQKVWSEVNQAVLDYENRESTPKLAKLLKL----LLWAQNELDQKKVKY 213
L W + + + +S ++ L L L A+ + +KKV +
Sbjct: 664 VAEKELEASVALDAWLQTDPEIQPSPFVQSQKRVVHLQLLRRHTLRAAERNVRRKKVSF 722
>gi|239745175 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 31.6 bits (70), Expect = 0.59
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 105 QQQHLIELIRQR----ETEAA--LEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEES 158
QQQ +E +R + E AA LEF Q +++Q +E+++CL E LA L E+
Sbjct: 604 QQQSYVEDLRHQILAEEIRAAKELEFDQAWISQQIKENQQCLLREETWLASLQQQQQEDQ 663
Query: 159 PFGDLLHTMQRQKVWSEVNQAVLDYENRESTPKLAKLLKL----LLWAQNELDQKKVKY 213
L W + + + +S ++ L L L A+ + +KKV +
Sbjct: 664 VAEKELEASVALDAWLQTDPEIQPSPFVQSQKRVVHLQLLRRHTLRAAERNVRRKKVSF 722
>gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo
sapiens]
Length = 514
Score = 31.6 bits (70), Expect = 0.59
Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 23/134 (17%)
Query: 22 LHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPS-----------------VDLETL 64
+ + ++N L+ YL GF +A F +ES I S L+ +
Sbjct: 1 MSISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYV 60
Query: 65 DERIKIRE--MILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAAL 122
+ + I E + G+ E+++LI+++ P+++ T + Y + L + AA
Sbjct: 61 EAEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAY----RDKLAQQQAAAAAAAAA 116
Query: 123 EFAQTQLAEQGEES 136
+Q A+ GE +
Sbjct: 117 AASQQGSAKNGENT 130
>gi|157502225 Janus kinase and microtubule interacting protein 3
[Homo sapiens]
Length = 844
Score = 30.8 bits (68), Expect = 1.00
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 65 DERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYF-------HLQQQHLIELIRQRE 117
+ +K RE L+ ++Q A A I L L + + + + + + Q L+E I+Q E
Sbjct: 530 EREVKTREQ-LQAEVQRAQARIEDLEKALAEQGQDMKWIEEKQALYRRNQELVEKIKQME 588
Query: 118 TEAALEFAQTQLAEQGEESREC----LTEMERTLALLAFDSPEESPFGD 162
TE A + Q A E E L E ER ++F +PF D
Sbjct: 589 TEEARLRHEVQDARDQNELLEFRILELEERERKSPAISF---HHTPFVD 634
>gi|15208660 tripartite motif protein 21 [Homo sapiens]
Length = 475
Score = 30.8 bits (68), Expect = 1.00
Identities = 34/161 (21%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 43 KEAAEKF--RMESGIEPSVDLETLDERIKIREMILKGQIQEAIALINS-LHPELLDTNRY 99
+EAA+++ +++ + + L E++++ I + ++ + S +H E + +
Sbjct: 129 EEAAQEYQEKLQVALGELRRKQELAEKLEVEIAIKRADWKKTVETQKSRIHAEFVQQKNF 188
Query: 100 LYFHLQQQHLIELIR-QRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEES 158
L Q+Q L EL + +RE L + +LA+Q + +E ++E++R A + +E
Sbjct: 189 LVEEEQRQ-LQELEKDEREQLRILGEKEAKLAQQSQALQELISELDRRCHSSALELLQE- 246
Query: 159 PFGDLLHTMQRQKVWSEVNQAVLDYENRE--STPKLAKLLK 197
++ ++R + W+ + + E R P L K+L+
Sbjct: 247 ----VIIVLERSESWNLKDLDITSPELRSVCHVPGLKKMLR 283
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 30.8 bits (68), Expect = 1.00
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 62 ETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQ--HLIELIRQRETE 119
E L+E IK + I++ Q Q + L+ SL + + + + Y H Q H + + E
Sbjct: 906 EHLEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQMNATHTQLFLEKDEEI 965
Query: 120 AALEFAQTQLAEQGEESRE 138
+L+ Q+ Q E R+
Sbjct: 966 KSLQKTIEQIKTQLHEERQ 984
>gi|71051596 coiled-coil domain containing 7 [Homo sapiens]
Length = 486
Score = 30.8 bits (68), Expect = 1.00
Identities = 23/111 (20%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 43 KEAAEKFRMESGIEPSVDLETLDE--RIKIREMILKGQIQEAIALINSLHPELLDTNRYL 100
+++ +K E + DL+ + + R++I +L+ Q+++A+ E L
Sbjct: 356 EDSEKKMSPEKEFKIKEDLDQVQKVARLEIENKVLQEQLKQALQ-------EAEKAKHQL 408
Query: 101 YFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLA 151
+ L Q+ L++ + +TE ++ +Q +GE+S+ E E +L++
Sbjct: 409 NYFLNQEKLLK--SEGKTETTMQVGNSQTKVKGEDSKNIPLEKETRKSLVS 457
>gi|37059792 coiled-coil domain containing 7 [Homo sapiens]
Length = 486
Score = 30.8 bits (68), Expect = 1.00
Identities = 23/111 (20%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 43 KEAAEKFRMESGIEPSVDLETLDE--RIKIREMILKGQIQEAIALINSLHPELLDTNRYL 100
+++ +K E + DL+ + + R++I +L+ Q+++A+ E L
Sbjct: 356 EDSEKKMSPEKEFKIKEDLDQVQKVARLEIENKVLQEQLKQALQ-------EAEKAKHQL 408
Query: 101 YFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLA 151
+ L Q+ L++ + +TE ++ +Q +GE+S+ E E +L++
Sbjct: 409 NYFLNQEKLLK--SEGKTETTMQVGNSQTKVKGEDSKNIPLEKETRKSLVS 457
>gi|13376042 dermal papilla derived protein 13 [Homo sapiens]
Length = 434
Score = 30.4 bits (67), Expect = 1.3
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 20 NNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQI 79
N L Q A ++ + NYL+ G KEA I P +T D I ++ G
Sbjct: 205 NLLSSQVACLSHIAANYLI--GQKEAKRWGTAHGSIVPYQAFKTKDGYI----VVGAGNN 258
Query: 80 QEAIALINSLH-PELLDTNRYLYFHLQQQHLIELIR 114
Q+ + L PEL+D ++Y HL+ + ELI+
Sbjct: 259 QQFATVCKILDLPELIDNSKYKTNHLRVHNRKELIK 294
>gi|22035548 amyloid beta A4 precursor protein-binding, family A,
member 1 [Homo sapiens]
Length = 837
Score = 29.6 bits (65), Expect = 2.2
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 55 IEPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIR 114
+E S ++E DE G++ E++ + HPE+ + + QQQH +
Sbjct: 4 LEGSAEVEVTDEAAG-------GEVNESVEA-DLEHPEVEEEQQQ---PPQQQHYVG--- 49
Query: 115 QRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLL 164
+ + ALE + QL ++ EE ECL T + F + ++ GD++
Sbjct: 50 RHQRGRALEDLRAQLGQEEEERGECLARSASTES--GFHNHTDTAEGDVI 97
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 29.3 bits (64), Expect = 2.9
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 100 LYFHLQQQHLIELIRQRETEAALEFAQTQL------AEQGEESRECLTEMERTLALLAFD 153
+Y H QQ + R+ E +AAL+ +T++ +E EE E E + LA
Sbjct: 49 IYTHWQQTSELGRKRKAEEDAALQAKKTRVSDPISTSESSEEEEEAEAETAKATPRLA-- 106
Query: 154 SPEESPFGDLLHTMQRQKVWSEVNQA 179
S S G L + ++K +E +A
Sbjct: 107 STNSSVLGADLPSSMKEKAKAETEKA 132
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 29.3 bits (64), Expect = 2.9
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 100 LYFHLQQQHLIELIRQRETEAALEFAQTQL------AEQGEESRECLTEMERTLALLAFD 153
+Y H QQ + R+ E +AAL+ +T++ +E EE E E + LA
Sbjct: 49 IYTHWQQTSELGRKRKAEEDAALQAKKTRVSDPISTSESSEEEEEAEAETAKATPRLA-- 106
Query: 154 SPEESPFGDLLHTMQRQKVWSEVNQA 179
S S G L + ++K +E +A
Sbjct: 107 STNSSVLGADLPSSMKEKAKAETEKA 132
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 29.3 bits (64), Expect = 2.9
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 100 LYFHLQQQHLIELIRQRETEAALEFAQTQL------AEQGEESRECLTEMERTLALLAFD 153
+Y H QQ + R+ E +AAL+ +T++ +E EE E E + LA
Sbjct: 49 IYTHWQQTSELGRKRKAEEDAALQAKKTRVSDPISTSESSEEEEEAEAETAKATPRLA-- 106
Query: 154 SPEESPFGDLLHTMQRQKVWSEVNQA 179
S S G L + ++K +E +A
Sbjct: 107 STNSSVLGADLPSSMKEKAKAETEKA 132
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 29.3 bits (64), Expect = 2.9
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 100 LYFHLQQQHLIELIRQRETEAALEFAQTQL------AEQGEESRECLTEMERTLALLAFD 153
+Y H QQ + R+ E +AAL+ +T++ +E EE E E + LA
Sbjct: 49 IYTHWQQTSELGRKRKAEEDAALQAKKTRVSDPISTSESSEEEEEAEAETAKATPRLA-- 106
Query: 154 SPEESPFGDLLHTMQRQKVWSEVNQA 179
S S G L + ++K +E +A
Sbjct: 107 STNSSVLGADLPSSMKEKAKAETEKA 132
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,895,574
Number of Sequences: 37866
Number of extensions: 309364
Number of successful extensions: 891
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 84
length of query: 228
length of database: 18,247,518
effective HSP length: 99
effective length of query: 129
effective length of database: 14,498,784
effective search space: 1870343136
effective search space used: 1870343136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.