Guide to the Human Genome
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Name: RANBP10 Sequence: fasta or formatted (620aa) NCBI GI: 40538736
Description:

RAN binding protein 10

Referenced in:

Ran and Rag

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         44           3
 C cysteine            2.3         14           2
 D aspartate           4.4         27           2
 E glutamate           5.3         33           2
 F phenylalanine       2.6         16           1
 G glycine             9.4         58           3
 H histidine           3.7         23           2
 I isoleucine          3.2         20           2
 K lysine              3.5         22           1
 L leucine             7.9         49           2
 M methionine          2.6         16           1
 N asparagine          4.7         29           1
 P proline             6.5         40           2
 Q glutamine           5.8         36           2
 R arginine            4.8         30           2
 S serine             12.4         77          14
 T threonine           4.8         30           2
 V valine              4.4         27           1
 W tryptophan          0.8          5           1
 Y tyrosine            3.9         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAN binding protein 10 
RANBP9                0.659   RAN binding protein 9 
SPRYD3                0.048   SPRY domain containing 3 
DSPP                  0.030   dentin sialophosphoprotein preproprotein 
RNF123                0.026   ring finger protein 123 
TNRC18                0.026   trinucleotide repeat containing 18 
CHD9                  0.023   chromodomain helicase DNA binding protein 9 
SRRM2                 0.020   splicing coactivator subunit SRm300 
MUC21                 0.020   mucin 21 
THRAP3                0.019   thyroid hormone receptor associated protein 3 [Homo...
DDX1                  0.019   DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 
MLLT1                 0.019   myeloid/lymphoid or mixed-lineage leukemia (trithora...
PNN                   0.019   pinin, desmosome associated protein 
MLLT3                 0.018   myeloid/lymphoid or mixed-lineage leukemia (trithor...
MAGEC1                0.018   melanoma antigen family C, 1 
ZCCHC10               0.018   zinc finger, CCHC domain containing 10 
C20orf11              0.018   chromosome 20 open reading frame 11 
RYR3                  0.017   ryanodine receptor 3 
RYR1                  0.016   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.016   skeletal muscle ryanodine receptor isoform 1 
ASH2L                 0.016   ash2-like isoform b 
ASH2L                 0.016   ash2-like isoform a 
SHE                   0.016   Src homology 2 domain containing E 
RYR2                  0.015   cardiac muscle ryanodine receptor 
ZC3H18                0.015   zinc finger CCCH-type containing 18 
HNRNPUL2              0.015   heterogeneous nuclear ribonucleoprotein U-like 2 [H...
SFRS2B                0.015   splicing factor, arginine/serine-rich 2B 
LOC643446             0.014   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.014   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.014   PREDICTED: similar to ribonucleic acid binding prot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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