Guide to the Human Genome
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Name: CCDC7 Sequence: fasta or formatted (486aa) NCBI GI: 37059792
Description:

coiled-coil domain containing 7

Referenced in:

Coiled-Coil Proteins

Other entries for this name:
alt mRNA [486aa] coiled-coil domain containing 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         25           2
 C cysteine            1.0          5           1
 D aspartate           4.3         21           2
 E glutamate          11.9         58           2
 F phenylalanine       2.7         13           1
 G glycine             2.7         13           2
 H histidine           2.3         11           1
 I isoleucine          3.9         19           2
 K lysine             13.4         65           3
 L leucine            10.9         53           2
 M methionine          2.9         14           1
 N asparagine          5.1         25           2
 P proline             4.1         20           2
 Q glutamine           6.8         33           1
 R arginine            3.1         15           1
 S serine              7.0         34           2
 T threonine           5.6         27           2
 V valine              5.6         27           2
 W tryptophan          0.4          2           1
 Y tyrosine            1.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 7 
CCDC7                 1.000   coiled-coil domain containing 7 
GOLGB1                0.041   golgi autoantigen, golgin subfamily b, macrogolgin ...
ERC1                  0.038   RAB6-interacting protein 2 isoform epsilon 
TCHH                  0.036   trichohyalin 
PMFBP1                0.035   polyamine modulated factor 1 binding protein 1 isof...
PMFBP1                0.035   polyamine modulated factor 1 binding protein 1 isof...
LOC283685             0.031   PREDICTED: golgi autoantigen, golgin subfamily a-li...
TRIP11                0.031   thyroid hormone receptor interactor 11 
MYH14                 0.030   myosin, heavy chain 14 isoform 1 
MYH14                 0.030   myosin, heavy chain 14 isoform 2 
MYH14                 0.030   myosin, heavy chain 14 isoform 3 
EEA1                  0.030   early endosome antigen 1, 162kD 
CTAGE5                0.030   CTAGE family, member 5 isoform 3 
CTAGE5                0.030   CTAGE family, member 5 isoform 1 
CTAGE5                0.030   CTAGE family, member 5 isoform 4 
CTAGE5                0.030   CTAGE family, member 5 isoform 2 
LOC645202             0.029   PREDICTED: hypothetical protein LOC645202 
HOOK1                 0.029   hook homolog 1 
GOLGA4                0.029   golgi autoantigen, golgin subfamily a, 4 
KIAA1524              0.029   p90 autoantigen 
TPM1                  0.029   tropomyosin 1 alpha chain isoform 4 
TPM1                  0.029   tropomyosin 1 alpha chain isoform 5 
MYH11                 0.029   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.029   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.029   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.029   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH13                 0.028   myosin, heavy polypeptide 13, skeletal muscle [Homo...
BOD1L                 0.028   biorientation of chromosomes in cell division 1-like...
CCDC110               0.028   coiled-coil domain containing 110 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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