Guide to the Human Genome
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Name: JAKMIP3 Sequence: fasta or formatted (844aa) NCBI GI: 157502225
Description:

Janus kinase and microtubule interacting protein 3

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         72           2
 C cysteine            0.4          3           1
 D aspartate           5.2         44           3
 E glutamate          14.9        126           3
 F phenylalanine       2.4         20           2
 G glycine             3.0         25           2
 H histidine           1.8         15           2
 I isoleucine          4.1         35           2
 K lysine              9.0         76           2
 L leucine            12.9        109           2
 M methionine          2.0         17           1
 N asparagine          2.1         18           1
 P proline             1.7         14           1
 Q glutamine           8.4         71           2
 R arginine            8.5         72           2
 S serine              4.5         38           2
 T threonine           3.2         27           1
 V valine              5.5         46           3
 W tryptophan          0.5          4           1
 Y tyrosine            1.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Janus kinase and microtubule interacting protein 3 ... 
JAKMIP1               0.619   janus kinase and microtubule interacting protein 1 ...
JAKMIP2               0.578   Janus kinase and microtubule interacting protein 2 [...
JAKMIP1               0.435   janus kinase and microtubule interacting protein 1 i...
TCHH                  0.061   trichohyalin 
MYH1                  0.058   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH13                 0.057   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH7                  0.054   myosin, heavy chain 7, cardiac muscle, beta 
MYH4                  0.052   myosin, heavy polypeptide 4, skeletal muscle 
MYH9                  0.052   myosin, heavy polypeptide 9, non-muscle 
CCDC88A               0.052   coiled-coil domain containing 88A isoform 1 
MYH6                  0.051   myosin heavy chain 6 
MYH2                  0.051   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.051   myosin, heavy chain 2, skeletal muscle, adult [Homo...
GOLGB1                0.051   golgi autoantigen, golgin subfamily b, macrogolgin ...
CCDC88A               0.051   coiled-coil domain containing 88A isoform 2 
ERC2                  0.050   cytomatrix protein p110 
MYH11                 0.049   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.049   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.049   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.049   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
PLEC1                 0.049   plectin 1 isoform 11 
PLEC1                 0.049   plectin 1 isoform 10 
PLEC1                 0.049   plectin 1 isoform 8 
PLEC1                 0.049   plectin 1 isoform 7 
PLEC1                 0.049   plectin 1 isoform 6 
PLEC1                 0.049   plectin 1 isoform 3 
PLEC1                 0.049   plectin 1 isoform 2 
PLEC1                 0.049   plectin 1 isoform 1 
MYH10                 0.049   myosin, heavy polypeptide 10, non-muscle 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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