Guide to the Human Genome
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Name: AP1GBP1 Sequence: fasta or formatted (1302aa) NCBI GI: 38569411
Description:

AP1 gamma subunit binding protein 1 isoform 2

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [1314aa] AP1 gamma subunit binding protein 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1        106           3
 C cysteine            1.0         13           1
 D aspartate           6.3         82           3
 E glutamate           6.1         80           3
 F phenylalanine       4.5         59           1
 G glycine             7.9        103           4
 H histidine           0.8         11           1
 I isoleucine          3.0         39           1
 K lysine              6.5         85           2
 L leucine             8.0        104           2
 M methionine          3.0         39           1
 N asparagine          3.2         42           2
 P proline             7.6         99           2
 Q glutamine           5.2         68           3
 R arginine            2.6         34           2
 S serine             12.6        164           4
 T threonine           6.0         78           3
 V valine              4.9         64           2
 W tryptophan          0.5          6           1
 Y tyrosine            2.0         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   AP1 gamma subunit binding protein 1 isoform 2 
AP1GBP1               0.996   AP1 gamma subunit binding protein 1 isoform 1 
DSPP                  0.015   dentin sialophosphoprotein preproprotein 
KIAA1217              0.010   sickle tail isoform 3 
KIAA1217              0.010   sickle tail isoform 2 
POU3F3                0.009   POU class 3 homeobox 3 
MUC12                 0.008   PREDICTED: mucin 12 
AKAP12                0.008   A kinase (PRKA) anchor protein 12 isoform 1 
MUC17                 0.008   mucin 17 
ITSN1                 0.008   intersectin 1 isoform ITSN-s 
ITSN1                 0.008   intersectin 1 isoform ITSN-l 
AKAP12                0.007   A kinase (PRKA) anchor protein 12 isoform 2 
ALMS1                 0.007   Alstrom syndrome 1 
ARID1B                0.007   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.007   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.007   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
TRIO                  0.007   triple functional domain (PTPRF interacting) 
EPS15                 0.007   epidermal growth factor receptor pathway substrate 15...
LOC100294249          0.007   PREDICTED: hypothetical protein XP_002344067 
LOC729792             0.007   PREDICTED: hypothetical protein 
LOC729792             0.007   PREDICTED: hypothetical protein 
LOC729792             0.007   PREDICTED: hypothetical protein 
LOC100294501          0.007   PREDICTED: hypothetical protein 
LOC100294238          0.007   PREDICTED: hypothetical protein 
LOC100294204          0.007   PREDICTED: hypothetical protein 
LOC100294136          0.007   PREDICTED: hypothetical protein 
LOC100294091          0.007   PREDICTED: hypothetical protein 
LOC730401             0.007   PREDICTED: hypothetical protein 
ITSN2                 0.007   intersectin 2 isoform 3 
ITSN2                 0.007   intersectin 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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