Guide to the Human Genome
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Name: RNF112 Sequence: fasta or formatted (632aa) NCBI GI: 14149631
Description:

ring finger protein 112

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         63           4
 C cysteine            3.5         22           2
 D aspartate           4.1         26           3
 E glutamate           6.2         39           2
 F phenylalanine       2.5         16           1
 G glycine            11.2         71           3
 H histidine           3.0         19           1
 I isoleucine          2.4         15           1
 K lysine              4.4         28           2
 L leucine            12.8         81           3
 M methionine          3.3         21           1
 N asparagine          1.9         12           1
 P proline             5.7         36           2
 Q glutamine           4.4         28           2
 R arginine            7.9         50           3
 S serine              5.4         34           2
 T threonine           3.8         24           2
 V valine              5.2         33           2
 W tryptophan          0.9          6           1
 Y tyrosine            1.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 112 
ATL1                  0.056   atlastin GTPase 1 isoform b 
ATL1                  0.056   atlastin GTPase 1 isoform b 
ATL1                  0.056   atlastin GTPase 1 isoform a 
ATL3                  0.049   atlastin 3 
ATL2                  0.048   atlastin GTPase 2 isoform 2 
ATL2                  0.048   atlastin GTPase 2 isoform 1 
TRIM11                0.030   tripartite motif-containing 11 
TRIM4                 0.029   tripartite motif protein TRIM4 isoform alpha 
TRIM4                 0.029   tripartite motif protein TRIM4 isoform beta 
TRIM77                0.027   PREDICTED: tripartite motif-containing 77 
TRIM77                0.027   PREDICTED: tripartite motif-containing 77 
LOC100289112          0.027   PREDICTED: hypothetical protein XP_002343148 
TRIM77                0.027   tripartite motif-containing 77 
TRIM26                0.025   tripartite motif-containing 26 
TRIM31                0.021   tripartite motif protein 31 
TRIM7                 0.021   tripartite motif-containing 7 isoform 1 
TRIM7                 0.021   tripartite motif-containing 7 isoform 4 
TRIM69                0.021   tripartite motif-containing 69 isoform a 
TRIM58                0.021   tripartite motif-containing 58 
TRIM75                0.021   tripartite motif-containing 75 
TRIM25                0.020   tripartite motif-containing 25 
TRIM64                0.020   tripartite motif-containing 64 
TRIM17                0.020   tripartite motif-containing 17 isoform 3 
TRIM17                0.020   tripartite motif-containing 17 isoform 1 
TRIM17                0.020   tripartite motif-containing 17 isoform 1 
TRIM21                0.020   tripartite motif protein 21 
TRIM60                0.020   ring finger protein 129 
TRIM5                 0.019   tripartite motif protein TRIM5 isoform alpha 
TRIM27                0.019   ret finger protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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