Guide to the Human Genome
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Name: ATL1 Sequence: fasta or formatted (553aa) NCBI GI: 189181742
Description:

atlastin GTPase 1 isoform b

Referenced in:

ADP-Ribosylation Factors

Other entries for this name:
alt prot [558aa] atlastin GTPase 1 isoform a
alt mRNA [553aa] atlastin GTPase 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         38           3
 C cysteine            1.1          6           1
 D aspartate           5.1         28           2
 E glutamate           8.1         45           4
 F phenylalanine       5.2         29           1
 G glycine             6.0         33           2
 H histidine           2.4         13           1
 I isoleucine          6.3         35           2
 K lysine              7.6         42           3
 L leucine            10.1         56           2
 M methionine          2.4         13           1
 N asparagine          4.2         23           2
 P proline             3.3         18           1
 Q glutamine           4.3         24           2
 R arginine            4.0         22           2
 S serine              6.9         38           2
 T threonine           5.2         29           2
 V valine              5.4         30           2
 W tryptophan          1.6          9           1
 Y tyrosine            4.0         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   atlastin GTPase 1 isoform b 
ATL1                  1.000   atlastin GTPase 1 isoform b 
ATL1                  0.994   atlastin GTPase 1 isoform a 
ATL2                  0.686   atlastin GTPase 2 isoform 1 
ATL2                  0.676   atlastin GTPase 2 isoform 2 
ATL3                  0.603   atlastin 3 
RNF112                0.064   ring finger protein 112 
GBP2                  0.048   guanylate binding protein 2, interferon-inducible [H...
GBP4                  0.048   guanylate binding protein 4 
GBP6                  0.045   guanylate binding protein family, member 6 
GBP7                  0.042   guanylate binding protein 4-like 
GBP3                  0.040   guanylate binding protein 3 
GBP5                  0.040   guanylate-binding protein 5 
GBP5                  0.040   guanylate-binding protein 5 
GBP1                  0.038   guanylate binding protein 1, interferon-inducible, ...
GRIPAP1               0.009   GRIP1 associated protein 1 isoform 2 
TMC1                  0.007   transmembrane channel-like 1 
IDO1                  0.007   indoleamine 2,3-dioxygenase 1 
KIAA1826              0.007   hypothetical protein LOC84437 
PIK3R1                0.006   phosphoinositide-3-kinase, regulatory subunit 1 (alp...
PIK3R1                0.006   phosphoinositide-3-kinase, regulatory subunit 1 (alp...
PIK3R1                0.006   phosphoinositide-3-kinase, regulatory subunit 1 (alp...
NAMPT                 0.006   nicotinamide phosphoribosyltransferase precursor [Hom...
CLNK                  0.006   mast cell immunoreceptor signal transducer 
TIAM2                 0.005   T-cell lymphoma invasion and metastasis 2 isoform a ...
GTF2F1                0.005   general transcription factor IIF, polypeptide 1, 74...
PKD1                  0.005   polycystin 1 isoform 2 precursor 
PKD1                  0.005   polycystin 1 isoform 1 precursor 
ABCC10                0.005   ATP-binding cassette, sub-family C, member 10 
IFNGR1                0.004   interferon gamma receptor 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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