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Search of human proteins with 8922867
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8922867 hypothetical protein LOC55776 [Homo sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8922867 hypothetical protein LOC55776 [Homo sapiens] 371 e-103
gi|169201810 PREDICTED: hypothetical protein [Homo sapiens] 38 0.006
gi|113422123 PREDICTED: hypothetical protein [Homo sapiens] 38 0.006
gi|113421705 PREDICTED: hypothetical protein [Homo sapiens] 38 0.006
gi|109638751 ubiquitin specific protease 6 [Homo sapiens] 34 0.061
gi|186700625 Rab-like GTP-binding protein 1 isoform 2 [Homo sapi... 33 0.10
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi... 33 0.10
gi|221139764 PHD and ring finger domains 1 [Homo sapiens] 33 0.18
gi|156104862 ankyrin repeat domain 38 [Homo sapiens] 32 0.30
gi|150010577 tyrosine kinase, non-receptor, 1 [Homo sapiens] 31 0.52
gi|108389176 tRNA splicing endonuclease 54 homolog [Homo sapiens] 31 0.68
gi|148833504 interleukin 16 isoform 2 [Homo sapiens] 30 0.89
gi|27735129 hypothetical protein LOC148345 [Homo sapiens] 30 0.89
gi|126352608 elastin isoform e precursor [Homo sapiens] 30 1.5
gi|126352446 elastin isoform d precursor [Homo sapiens] 30 1.5
gi|126352322 elastin isoform c precursor [Homo sapiens] 30 1.5
gi|126352700 elastin isoform b precursor [Homo sapiens] 30 1.5
gi|126352440 elastin isoform a precursor [Homo sapiens] 30 1.5
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
gi|169167066 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 30 1.5
gi|113416187 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 30 1.5
gi|113415691 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens] 30 1.5
gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens] 30 1.5
gi|7662228 synaptosomal-associated protein, 91kDa homolog [Homo ... 29 2.0
gi|4885455 SH2B adaptor protein 3 [Homo sapiens] 29 2.0
gi|239757559 PREDICTED: hypothetical protein [Homo sapiens] 29 2.0
gi|239752069 PREDICTED: hypothetical protein [Homo sapiens] 29 2.0
>gi|8922867 hypothetical protein LOC55776 [Homo sapiens]
Length = 183
Score = 371 bits (952), Expect = e-103
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MEQRLAEFRAARKRAGLAAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKPRPAS 60
MEQRLAEFRAARKRAGLAAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKPRPAS
Sbjct: 1 MEQRLAEFRAARKRAGLAAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKPRPAS 60
Query: 61 ARAQPGLVQEAAQPQGSTSETPWNTAIPLPSCWDQSFLTNITFLKVLLWLVLLGLFVELE 120
ARAQPGLVQEAAQPQGSTSETPWNTAIPLPSCWDQSFLTNITFLKVLLWLVLLGLFVELE
Sbjct: 61 ARAQPGLVQEAAQPQGSTSETPWNTAIPLPSCWDQSFLTNITFLKVLLWLVLLGLFVELE 120
Query: 121 FGLAYFVLSLFYWMYVGTRGPEEKKEGEKSAYSVFNPGCEAIQGTLTAEQLERELQLRPL 180
FGLAYFVLSLFYWMYVGTRGPEEKKEGEKSAYSVFNPGCEAIQGTLTAEQLERELQLRPL
Sbjct: 121 FGLAYFVLSLFYWMYVGTRGPEEKKEGEKSAYSVFNPGCEAIQGTLTAEQLERELQLRPL 180
Query: 181 AGR 183
AGR
Sbjct: 181 AGR 183
>gi|169201810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 177
Score = 37.7 bits (86), Expect = 0.006
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 24/107 (22%)
Query: 4 RLAEFRA-------ARKRAGLAAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKP 56
RL EFRA +R+ AG + AS G G++++ T A PG +P
Sbjct: 46 RLNEFRAERRESCVSRRAAGPSVPRSLASPGGLAQGQESQRGPTESARPG--------QP 97
Query: 57 RPASARAQPGLVQEAAQPQGSTSETPWNTAIPLPSCWDQSFLTNITF 103
R Q ++EA +P P P WD ++L N+ F
Sbjct: 98 AAEQLREQASGIREAQRPPPGR---------PRPQRWDCTYLRNVLF 135
>gi|113422123 PREDICTED: hypothetical protein [Homo sapiens]
Length = 177
Score = 37.7 bits (86), Expect = 0.006
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 24/107 (22%)
Query: 4 RLAEFRA-------ARKRAGLAAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKP 56
RL EFRA +R+ AG + AS G G++++ T A PG +P
Sbjct: 46 RLNEFRAERRESCVSRRAAGPSVPRSLASPGGLAQGQESQRGPTESARPG--------QP 97
Query: 57 RPASARAQPGLVQEAAQPQGSTSETPWNTAIPLPSCWDQSFLTNITF 103
R Q ++EA +P P P WD ++L N+ F
Sbjct: 98 AAEQLREQASGIREAQRPPPGR---------PRPQRWDCTYLRNVLF 135
>gi|113421705 PREDICTED: hypothetical protein [Homo sapiens]
Length = 177
Score = 37.7 bits (86), Expect = 0.006
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 24/107 (22%)
Query: 4 RLAEFRA-------ARKRAGLAAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKP 56
RL EFRA +R+ AG + AS G G++++ T A PG +P
Sbjct: 46 RLNEFRAERRESCVSRRAAGPSVPRSLASPGGLAQGQESQRGPTESARPG--------QP 97
Query: 57 RPASARAQPGLVQEAAQPQGSTSETPWNTAIPLPSCWDQSFLTNITF 103
R Q ++EA +P P P WD ++L N+ F
Sbjct: 98 AAEQLREQASGIREAQRPPPGR---------PRPQRWDCTYLRNVLF 135
>gi|109638751 ubiquitin specific protease 6 [Homo sapiens]
Length = 1406
Score = 34.3 bits (77), Expect = 0.061
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 18/103 (17%)
Query: 10 AARKRAGLAAQPPAASQGAQT---------PGEKAEAAATL-KAAPGWLKRFLVWKPR-- 57
A R++ LA +P AS+G +T PG A+ + A+P W RF P
Sbjct: 360 AKREQGSLAPRPVPASRGGKTLCKGYRQAPPGPPAQFQRPICSASPPWASRFSTPCPGGA 419
Query: 58 ------PASARAQPGLVQEAAQPQGSTSETPWNTAIPLPSCWD 94
P + P L PQGS W + LP+ D
Sbjct: 420 VREDTYPVGTQGVPSLALAQGGPQGSWRFLEWKSMPRLPTDLD 462
>gi|186700625 Rab-like GTP-binding protein 1 isoform 2 [Homo
sapiens]
Length = 520
Score = 33.5 bits (75), Expect = 0.10
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 5 LAEFRAARKRAGLAAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKPRPASARAQ 64
+ E R+ + LAA + S G+Q+P A A +T ++PG P+PA
Sbjct: 274 MMEARSRGHASPLAANGQSPSPGSQSPVVPAGAVSTGSSSPG--------TPQPA----- 320
Query: 65 PGLVQEAAQPQGSTSETPWNTAIPLPSC 92
P L AA P S P + A+P P+C
Sbjct: 321 PQLPLNAA-PPSSVPPVPPSEALPPPAC 347
>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
sapiens]
Length = 729
Score = 33.5 bits (75), Expect = 0.10
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 5 LAEFRAARKRAGLAAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKPRPASARAQ 64
+ E R+ + LAA + S G+Q+P A A +T ++PG P+PA
Sbjct: 274 MMEARSRGHASPLAANGQSPSPGSQSPVVPAGAVSTGSSSPG--------TPQPA----- 320
Query: 65 PGLVQEAAQPQGSTSETPWNTAIPLPSC 92
P L AA P S P + A+P P+C
Sbjct: 321 PQLPLNAA-PPSSVPPVPPSEALPPPAC 347
>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
Length = 1648
Score = 32.7 bits (73), Expect = 0.18
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 17/71 (23%)
Query: 19 AQPPAASQGAQTP-------GEKAEAAATLKAAPGWLKRFLVWKPRPASARAQPGLVQEA 71
+QPP +G Q P EKAEA ++ AP + + + G VQEA
Sbjct: 1331 SQPPPLPEGTQEPHLLRPDAAEKAEAPSSPDVAPAGKE----------DSPSASGRVQEA 1380
Query: 72 AQPQGSTSETP 82
A+P+ S+TP
Sbjct: 1381 ARPEEVVSQTP 1391
>gi|156104862 ankyrin repeat domain 38 [Homo sapiens]
Length = 995
Score = 32.0 bits (71), Expect = 0.30
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 11 ARKRAGLAAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKPRPASARAQPGLVQE 70
A + GL+ PPA GE + T + A G L F PR AS R P LVQE
Sbjct: 174 ASEEPGLSLGPPAPPALPPLQGEGSVCDGTFEPAEG-LAGFHSSSPR-ASTRI-PELVQE 230
Query: 71 AAQPQGSTSETPWNTAIPLP 90
A+P + P + +P P
Sbjct: 231 GAEPPEGVVKVPNHLPLPGP 250
>gi|150010577 tyrosine kinase, non-receptor, 1 [Homo sapiens]
Length = 661
Score = 31.2 bits (69), Expect = 0.52
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 12 RKRAGLAAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKPRPASARAQPGLVQEA 71
RK+A L PPA Q P E+ +K L+ L PRP + P +++A
Sbjct: 468 RKKANLWDAPPARGQRRNMPLER------MKGISRSLESVLSLGPRPTGGGSSPPEIRQA 521
Query: 72 -AQPQGSTS---ETPWNTAIPLPS 91
A PQG P +++ P PS
Sbjct: 522 RAVPQGPPGLPPRPPLSSSSPQPS 545
>gi|108389176 tRNA splicing endonuclease 54 homolog [Homo sapiens]
Length = 526
Score = 30.8 bits (68), Expect = 0.68
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 18 AAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKPRPASARAQPGLVQEAAQPQGS 77
A+ PP SQ +Q P EK + ++ +K G + P P AR G E+ + +
Sbjct: 228 ASSPPPCSQPSQCPEEKPQESSPMKGPGGPFQLLGSLGPSPGPAREGVGCSWESGRAENG 287
Query: 78 TS---ETPWN 84
+ + WN
Sbjct: 288 VTGAGKRRWN 297
>gi|148833504 interleukin 16 isoform 2 [Homo sapiens]
Length = 1332
Score = 30.4 bits (67), Expect = 0.89
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 18 AAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKPRPASARAQPGLVQEAAQPQG- 76
A + P+AS G PG + ++ + PGW + V + P P L ++A
Sbjct: 650 AGRSPSASAGCPGPGIGPQTKSSTEGEPGWRRASPVTQTSPIK---HPLLKRQARMDYSF 706
Query: 77 -STSETPW 83
+T+E PW
Sbjct: 707 DTTAEDPW 714
>gi|27735129 hypothetical protein LOC148345 [Homo sapiens]
Length = 656
Score = 30.4 bits (67), Expect = 0.89
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 15 AGLAAQPPAASQGAQTPGEKAEAAATLK------AAPGWLKRFLVWKPRPASARAQPGLV 68
A L P S G +TP AA+ + AA WL R L+ +P A A+ G
Sbjct: 210 AALRTTPSPPSPGPETPPAGVPPAASSQVWAAGPAAQEWLSRDLLHRPSDALAKKGLGPF 269
Query: 69 QEAAQP--QGSTS 79
+ A+P +G TS
Sbjct: 270 LQTAKPARRGQTS 282
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 29.6 bits (65), Expect = 1.5
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 15 AGLAAQPPAASQGAQTPGEKAEAAATLKAA 44
AGL A P GA PG A+AAA KAA
Sbjct: 77 AGLGAFPAVTFPGALVPGGVADAAAAYKAA 106
>gi|126352446 elastin isoform d precursor [Homo sapiens]
Length = 711
Score = 29.6 bits (65), Expect = 1.5
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 15 AGLAAQPPAASQGAQTPGEKAEAAATLKAA 44
AGL A P GA PG A+AAA KAA
Sbjct: 77 AGLGAFPAVTFPGALVPGGVADAAAAYKAA 106
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 29.6 bits (65), Expect = 1.5
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 15 AGLAAQPPAASQGAQTPGEKAEAAATLKAA 44
AGL A P GA PG A+AAA KAA
Sbjct: 77 AGLGAFPAVTFPGALVPGGVADAAAAYKAA 106
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 29.6 bits (65), Expect = 1.5
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 15 AGLAAQPPAASQGAQTPGEKAEAAATLKAA 44
AGL A P GA PG A+AAA KAA
Sbjct: 67 AGLGAFPAVTFPGALVPGGVADAAAAYKAA 96
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 29.6 bits (65), Expect = 1.5
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 15 AGLAAQPPAASQGAQTPGEKAEAAATLKAA 44
AGL A P GA PG A+AAA KAA
Sbjct: 77 AGLGAFPAVTFPGALVPGGVADAAAAYKAA 106
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 29.6 bits (65), Expect = 1.5
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 12 RKRAGLAAQPPAAS-----QGAQTP--GEKAEAAATLKAAPGWLKRFLVWKPRPASARAQ 64
R RAG A P + +G++ P G A A A ++APG +PAS A
Sbjct: 75 RHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPG--------SAQPASGAAG 126
Query: 65 PGLVQEAAQPQGSTSETP 82
P EAA P + P
Sbjct: 127 PAAAPEAAPPAWDPATLP 144
>gi|169167066 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 29.6 bits (65), Expect = 1.5
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 10 AARKRAGLAAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKPRPASARAQPGLVQ 69
AAR+R L PP AS+ + P A GW+K V R + GL +
Sbjct: 152 AARRRRALPRHPPLASE--RGPRTHTPAPLWQACLVGWVKPQCVHTERRGAVERGSGLAE 209
Query: 70 EAAQPQGST---SETP 82
E A +T SE P
Sbjct: 210 EDADQAPATQGNSELP 225
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 29.6 bits (65), Expect = 1.5
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 12 RKRAGLAAQPPAAS-----QGAQTP--GEKAEAAATLKAAPGWLKRFLVWKPRPASARAQ 64
R RAG A P + +G++ P G A A A ++APG +PAS A
Sbjct: 75 RHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPG--------SAQPASGAAG 126
Query: 65 PGLVQEAAQPQGSTSETP 82
P EAA P + P
Sbjct: 127 PAAAPEAAPPAWDPATLP 144
>gi|113416187 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 29.6 bits (65), Expect = 1.5
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 10 AARKRAGLAAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKPRPASARAQPGLVQ 69
AAR+R L PP AS+ + P A GW+K V R + GL +
Sbjct: 152 AARRRRALPRHPPLASE--RGPRTHTPAPLWQACLVGWVKPQCVHTERRGAVERGSGLAE 209
Query: 70 EAAQPQGST---SETP 82
E A +T SE P
Sbjct: 210 EDADQAPATQGNSELP 225
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 29.6 bits (65), Expect = 1.5
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 12 RKRAGLAAQPPAAS-----QGAQTP--GEKAEAAATLKAAPGWLKRFLVWKPRPASARAQ 64
R RAG A P + +G++ P G A A A ++APG +PAS A
Sbjct: 75 RHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPG--------SAQPASGAAG 126
Query: 65 PGLVQEAAQPQGSTSETP 82
P EAA P + P
Sbjct: 127 PAAAPEAAPPAWDPATLP 144
>gi|113415691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 29.6 bits (65), Expect = 1.5
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 10 AARKRAGLAAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKPRPASARAQPGLVQ 69
AAR+R L PP AS+ + P A GW+K V R + GL +
Sbjct: 152 AARRRRALPRHPPLASE--RGPRTHTPAPLWQACLVGWVKPQCVHTERRGAVERGSGLAE 209
Query: 70 EAAQPQGST---SETP 82
E A +T SE P
Sbjct: 210 EDADQAPATQGNSELP 225
>gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 29.6 bits (65), Expect = 1.5
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 5 LAEFRAARKRAGLAAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKPRPASARAQ 64
LAE R +R+R G AA P +GA P +PG +K ++ R A A+
Sbjct: 1353 LAELRRSREREGPAASPAENEEGASEP------------SPGGIKWGHLFGSRKAQREAR 1400
Query: 65 P 65
P
Sbjct: 1401 P 1401
>gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 29.6 bits (65), Expect = 1.5
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 5 LAEFRAARKRAGLAAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKPRPASARAQ 64
LAE R +R+R G AA P +GA P +PG +K ++ R A A+
Sbjct: 1353 LAELRRSREREGPAASPAENEEGASEP------------SPGGIKWGHLFGSRKAQREAR 1400
Query: 65 P 65
P
Sbjct: 1401 P 1401
>gi|7662228 synaptosomal-associated protein, 91kDa homolog [Homo
sapiens]
Length = 907
Score = 29.3 bits (64), Expect = 2.0
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 15 AGLAAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKPRPASARAQPGLVQEAAQP 74
A + PAAS+GA P AA L A G + P SA A P L A +P
Sbjct: 445 AASPGEAPAASEGAAAPATPTPVAAALDACSG----NDPFAPSEGSAEAAPELDLFAMKP 500
Query: 75 QGSTSE--TPW-NTAIPLPS 91
++ TP +TA P+P+
Sbjct: 501 PETSVPVVTPTASTAPPVPA 520
>gi|4885455 SH2B adaptor protein 3 [Homo sapiens]
Length = 575
Score = 29.3 bits (64), Expect = 2.0
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 18 AAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVW----KPRPAS---ARAQPGLVQE 70
A + PAA A PG EAA T A PG K+FL W +P P + A + L E
Sbjct: 151 AGELPAAHTAA-APGTPGEAAET-PARPGLAKKFLPWSLAREPPPEALKEAVLRYSLADE 208
Query: 71 AAQPQGS 77
A+ G+
Sbjct: 209 ASMDSGA 215
>gi|239757559 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 29.3 bits (64), Expect = 2.0
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 9 RAARKRAGLAAQPPA-ASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKP-RPASARAQPG 66
R A G A A A Q A K + ATL+ AP L W P RP SARA
Sbjct: 42 RPALPSVGAAPTSSARAVQAASRSSAKPGSIATLRGAPSAL--LCEWDPPRPCSARAATA 99
Query: 67 LVQEAAQPQGSTSETPWNTAIPLP 90
V + + S + +PLP
Sbjct: 100 AVSRGPRARSSAC-----SRLPLP 118
>gi|239752069 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 29.3 bits (64), Expect = 2.0
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 9 RAARKRAGLAAQPPA-ASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKP-RPASARAQPG 66
R A G A A A Q A K + ATL+ AP L W P RP SARA
Sbjct: 42 RPALPSVGAAPTSSARAVQAASRSSAKPGSIATLRGAPSAL--LCEWDPPRPCSARAATA 99
Query: 67 LVQEAAQPQGSTSETPWNTAIPLP 90
V + + S + +PLP
Sbjct: 100 AVSRGPRARSSAC-----SRLPLP 118
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,444,818
Number of Sequences: 37866
Number of extensions: 356632
Number of successful extensions: 1875
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 1824
Number of HSP's gapped (non-prelim): 106
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.