Guide to the Human Genome
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Name: CHST9 Sequence: fasta or formatted (443aa) NCBI GI: 116235458
Description:

GalNAc-4-sulfotransferase 2

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4         15           1
 C cysteine            1.4          6           1
 D aspartate           4.1         18           1
 E glutamate           7.0         31           2
 F phenylalanine       5.4         24           1
 G glycine             4.7         21           2
 H histidine           4.3         19           2
 I isoleucine          4.5         20           2
 K lysine              9.9         44           2
 L leucine             9.3         41           3
 M methionine          2.7         12           1
 N asparagine          5.2         23           1
 P proline             4.5         20           1
 Q glutamine           3.8         17           1
 R arginine            5.4         24           2
 S serine              6.5         29           2
 T threonine           5.0         22           2
 V valine              6.5         29           2
 W tryptophan          1.4          6           1
 Y tyrosine            5.0         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GalNAc-4-sulfotransferase 2 
CHST8                 0.410   carbohydrate (N-acetylgalactosamine 4-0) sulfotrans...
CHST8                 0.410   carbohydrate (N-acetylgalactosamine 4-0) sulfotrans...
CHST8                 0.410   carbohydrate (N-acetylgalactosamine 4-0) sulfotransf...
CHST11                0.210   carbohydrate sulfotransferase 11 
CHST13                0.163   carbohydrate sulfotransferase 13 
CHST12                0.156   carbohydrate sulfotransferase 12 
CHST10                0.148   HNK-1 sulfotransferase 
CHST14                0.134   dermatan 4 sulfotransferase 1 
RLF                   0.012   rearranged L-myc fusion 
ERCC3                 0.008   excision repair cross-complementing rodent repair def...
TEKT1                 0.008   tektin 1 
GPRIN3                0.007   G protein-regulated inducer of neurite outgrowth 3 ...
TCERG1L               0.007   transcription elongation regulator 1-like 
ARHGAP15              0.007   ARHGAP15 
TMCO5A                0.006   transmembrane and coiled-coil domains 5A 
ESCO1                 0.006   establishment of cohesion 1 homolog 1 
FAM111A               0.006   hypothetical protein LOC63901 
FAM111A               0.006   hypothetical protein LOC63901 
FAM111A               0.006   hypothetical protein LOC63901 
FAM111A               0.006   hypothetical protein LOC63901 
FAM111A               0.006   hypothetical protein LOC63901 
ITGA9                 0.006   integrin, alpha 9 precursor 
PI4K2A                0.006   phosphatidylinositol 4-kinase type 2 alpha 
NOL8                  0.006   nucleolar protein 8 
ZNF721                0.006   zinc finger protein 721 
TBC1D8B               0.004   TBC1 domain family, member 8B (with GRAM domain) iso...
ZNF571                0.004   zinc finger protein 571 
LMTK3                 0.004   lemur tyrosine kinase 3 
CWF19L2               0.004   CWF19-like 2, cell cycle control 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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